U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68940 AT1G68940 AT1G68940 |
| fragaria_vesca | FvH4_4g28940 |
| malus_domestica | MD13G1055000.v1.1 |
| prunus_persica | Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 |
| pyrus_communis | pycom16g04680 |
| rosa_chinensis | RchiOBHm_Chr4g0437081 |
| rosa_laevigata | RLG00000006470 |
| rosa_multiflora | Rmu_ssc0000006.1_g000011 |
| rosa_roxburghii | Rroxscaffold_5G00378160 |
| rosa_rugosa | Rorug04G0298000 |
| rosa_samantha | Rh4AG352700 Rh4BG362000 Rh4CG376300 Rh4DG356200 |
| rosa_wichuraiana | Rw4G030880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2586 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 851 |
| AccBSI | CCGCTC | 1 cut(s) | 957 |
| AccII | CGCG | 1 cut(s) | 1625 |
| AciI | CCGC | 7 cut(s) | 362, 596, 955, 1625, 1766, 2540, 2875 |
| AclWI | GGATC | 8 cut(s) | 281, 294, 546, 746, 759, 1258, 1315, 1942 |
| AcoI | YGGCCR | 4 cut(s) | 150, 237, 853, 1614 |
| AcsI | RAATTY | 6 cut(s) | 193, 204, 1731, 2201, 2295, 2422 |
| AcuI | CTGAAG | 7 cut(s) | 475, 1500, 1584, 1833, 2013, 2496, 2919 |
| AfaI | GTAC | 8 cut(s) | 84, 510, 695, 993, 1100, 1596, 1698, 1865 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 139, 686, 786, 851, 2087 |
| AflII | CTTAAG | 2 cut(s) | 614, 1396 |
| AflIII | ACRYGT | 1 cut(s) | 2833 |
| AgeI | ACCGGT | 1 cut(s) | 1233 |
| AhlI | ACTAGT | 1 cut(s) | 2704 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 255, 287, 1518, 1550 |
| AleI | CACNNNNGTG | 1 cut(s) | 1970 |
| Alw21I | GWGCWC | 2 cut(s) | 623, 2156 |
| Alw26I | GTCTC | 6 cut(s) | 372, 707, 1385, 1982, 2101, 2156 |
| AlwI | GGATC | 8 cut(s) | 281, 294, 546, 746, 759, 1258, 1315, 1942 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1316 |
| AoxI | GGCC | 8 cut(s) | 150, 237, 853, 1569, 1614, 1962, 2089, 2646 |
| ApeKI | GCWGC | 5 cut(s) | 313, 935, 1769, 2051, 2744 |
| ApoI | RAATTY | 6 cut(s) | 193, 204, 1731, 2201, 2295, 2422 |
| AsiGI | ACCGGT | 1 cut(s) | 1233 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 207, 1530, 2570 |
| AspLEI | GCGC | 2 cut(s) | 313, 1625 |
| AspS9I | GGNCC | 6 cut(s) | 408, 662, 1236, 1569, 2089, 2646 |
| AsuC2I | CCSGG | 2 cut(s) | 1820, 2633 |
| AsuHPI | GGTGA | 4 cut(s) | 1223, 1407, 2070, 2630 |
| AvaII | GGWCC | 3 cut(s) | 408, 662, 1236 |
| BaeGI | GKGCMC | 2 cut(s) | 845, 2633 |
| BalI | TGGCCA | 4 cut(s) | 152, 239, 855, 1616 |
| BamHI | GGATCC | 2 cut(s) | 286, 751 |
| BanII | GRGCYC | 1 cut(s) | 2156 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2558, 2590 |
| BauI | CACGAG | 1 cut(s) | 1451 |
| Bbv12I | GWGCWC | 2 cut(s) | 623, 2156 |
| BbvI | GCAGC | 5 cut(s) | 325, 947, 1756, 2063, 2731 |
| BccI | CCATC | 5 cut(s) | 373, 1144, 1347, 2994, 3007 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1356, 1390 |
| BclI | TGATCA | 2 cut(s) | 1335, 2923 |
| BcnI | CCSGG | 2 cut(s) | 1820, 2633 |
| BcoDI | GTCTC | 6 cut(s) | 372, 707, 1385, 1982, 2101, 2156 |
| BcuI | ACTAGT | 1 cut(s) | 2704 |
| BfrI | CTTAAG | 2 cut(s) | 614, 1396 |
| BfuAI | ACCTGC | 1 cut(s) | 2586 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 267 |
| BglII | AGATCT | 1 cut(s) | 561 |
| BisI | GCNGC | 8 cut(s) | 314, 936, 1626, 1767, 1770, 2052, 2745, 2876 |
| BlpI | GCTNAGC | 1 cut(s) | 958 |
| BlsI | GCNGC | 8 cut(s) | 315, 937, 1627, 1768, 1771, 2053, 2746, 2877 |
| Bme1390I | CCNGG | 2 cut(s) | 1820, 2633 |
| Bme18I | GGWCC | 3 cut(s) | 408, 662, 1236 |
| BmgT120I | GGNCC | 6 cut(s) | 408, 662, 1236, 1569, 2089, 2646 |
| BmiI | GGNNCC | 7 cut(s) | 288, 410, 702, 753, 1458, 1570, 2647 |
| BmrFI | CCNGG | 2 cut(s) | 1820, 2633 |
| BmsI | GCATC | 8 cut(s) | 65, 414, 461, 973, 1354, 1485, 2671, 3036 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2492, 2524 |
| BpmI | CTGGAG | 3 cut(s) | 338, 666, 1338 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 958 |
| BpuEI | CTTGAG | 6 cut(s) | 370, 432, 1035, 1289, 1823, 1829 |
| BpuMI | CCSGG | 2 cut(s) | 1820, 2633 |
| Bsa29I | ATCGAT | 1 cut(s) | 471 |
| BsaI | GGTCTC | 2 cut(s) | 372, 1385 |
| BsaJI | CCNNGG | 4 cut(s) | 198, 969, 1519, 2641 |
| BsaWI | WCCGGW | 1 cut(s) | 1233 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 664, 692, 694, 722 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 139, 686, 786, 851, 2087 |
| Bse118I | RCCGGY | 1 cut(s) | 1233 |
| Bse1I | ACTGG | 6 cut(s) | 683, 755, 826, 856, 1321, 1617 |
| Bse3DI | GCAATG | 5 cut(s) | 674, 993, 1076, 1253, 2046 |
| BseCI | ATCGAT | 1 cut(s) | 471 |
| BseDI | CCNNGG | 4 cut(s) | 198, 969, 1519, 2641 |
| BseGI | GGATG | 6 cut(s) | 56, 452, 1162, 1869, 2779, 2791 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 139, 686, 786, 851, 2087 |
| BseMI | GCAATG | 5 cut(s) | 674, 993, 1076, 1253, 2046 |
| BseMII | CTCAG | 6 cut(s) | 57, 593, 972, 2151, 2169, 3009 |
| BseNI | ACTGG | 6 cut(s) | 683, 755, 826, 856, 1321, 1617 |
| BseRI | GAGGAG | 5 cut(s) | 335, 662, 1642, 2626, 2629 |
| BseSI | GKGCMC | 2 cut(s) | 845, 2633 |
| BseXI | GCAGC | 5 cut(s) | 325, 947, 1756, 2063, 2731 |
| BsgI | GTGCAG | 1 cut(s) | 420 |
| Bsh1236I | CGCG | 1 cut(s) | 1625 |
| BshFI | GGCC | 8 cut(s) | 152, 239, 855, 1571, 1616, 1964, 2091, 2648 |
| BshTI | ACCGGT | 1 cut(s) | 1233 |
| BshVI | ATCGAT | 1 cut(s) | 471 |
| BsiHKAI | GWGCWC | 2 cut(s) | 623, 2156 |
| BsiSI | CCGG | 3 cut(s) | 1234, 1819, 2633 |
| BslFI | GGGAC | 1 cut(s) | 394 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 139, 686, 786, 851, 2087 |
| BsmAI | GTCTC | 6 cut(s) | 372, 707, 1385, 1982, 2101, 2156 |
| BsmBI | CGTCTC | 1 cut(s) | 2156 |
| BsmFI | GGGAC | 1 cut(s) | 394 |
| BsmI | GAATGC | 5 cut(s) | 270, 350, 1628, 2358, 2848 |
| BsnI | GGCC | 8 cut(s) | 152, 239, 855, 1571, 1616, 1964, 2091, 2648 |
| Bso31I | GGTCTC | 2 cut(s) | 372, 1385 |
| Bsp1286I | GDGCHC | 4 cut(s) | 623, 845, 2156, 2633 |
| Bsp1407I | TGTACA | 2 cut(s) | 1696, 1863 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 958 |
| Bsp19I | CCATGG | 1 cut(s) | 198 |
| BspACI | CCGC | 7 cut(s) | 362, 596, 955, 1625, 1766, 2540, 2875 |
| BspANI | GGCC | 8 cut(s) | 152, 239, 855, 1571, 1616, 1964, 2091, 2648 |
| BspCNI | CTCAG | 6 cut(s) | 58, 592, 971, 2152, 2170, 3010 |
| BspDI | ATCGAT | 1 cut(s) | 471 |
| BspFNI | CGCG | 1 cut(s) | 1625 |
| BspHI | TCATGA | 2 cut(s) | 2451, 2562 |
| BspLI | GGNNCC | 7 cut(s) | 288, 410, 702, 753, 1458, 1570, 2647 |
| BspMI | ACCTGC | 1 cut(s) | 2586 |
| BspPI | GGATC | 8 cut(s) | 281, 294, 546, 746, 759, 1258, 1315, 1942 |
| BspQI | GCTCTTC | 1 cut(s) | 2253 |
| BspTI | CTTAAG | 2 cut(s) | 614, 1396 |
| BspTNI | GGTCTC | 2 cut(s) | 372, 1385 |
| BsrBI | CCGCTC | 1 cut(s) | 957 |
| BsrDI | GCAATG | 5 cut(s) | 674, 993, 1076, 1253, 2046 |
| BsrFI | RCCGGY | 1 cut(s) | 1233 |
| BsrGI | TGTACA | 2 cut(s) | 1696, 1863 |
| BsrI | ACTGG | 6 cut(s) | 683, 755, 826, 856, 1321, 1617 |
| BssAI | RCCGGY | 1 cut(s) | 1233 |
| BssECI | CCNNGG | 4 cut(s) | 198, 969, 1519, 2641 |
| BssSI | CACGAG | 1 cut(s) | 1451 |
| BssT1I | CCWWGG | 3 cut(s) | 198, 969, 1519 |
| Bst2BI | CACGAG | 1 cut(s) | 1451 |
| Bst4CI | ACNGT | 4 cut(s) | 76, 1126, 1835, 2071 |
| Bst6I | CTCTTC | 5 cut(s) | 1485, 1707, 2253, 2299, 2515 |
| BstAFI | CTTAAG | 2 cut(s) | 614, 1396 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 398, 1778 |
| BstAUI | TGTACA | 2 cut(s) | 1696, 1863 |
| BstC8I | GCNNGC | 5 cut(s) | 127, 955, 1999, 2187, 2964 |
| BstDEI | CTNAG | 9 cut(s) | 66, 86, 579, 958, 1405, 1944, 2160, 2178, 3018 |
| BstDSI | CCRYGG | 1 cut(s) | 198 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 784 |
| BstF5I | GGATG | 6 cut(s) | 56, 452, 1162, 1869, 2779, 2791 |
| BstFNI | CGCG | 1 cut(s) | 1625 |
| BstHHI | GCGC | 2 cut(s) | 313, 1625 |
| BstMAI | GTCTC | 6 cut(s) | 372, 707, 1385, 1982, 2101, 2156 |
| BstNSI | RCATGY | 4 cut(s) | 129, 186, 1882, 2837 |
| BstSCI | CCNGG | 2 cut(s) | 1818, 2631 |
| BstSLI | GKGCMC | 2 cut(s) | 845, 2633 |
| BstUI | CGCG | 1 cut(s) | 1625 |
| BstV1I | GCAGC | 5 cut(s) | 325, 947, 1756, 2063, 2731 |
| BstX2I | RGATCY | 5 cut(s) | 286, 538, 561, 751, 1947 |
| BstYI | RGATCY | 5 cut(s) | 286, 538, 561, 751, 1947 |
| Bsu15I | ATCGAT | 1 cut(s) | 471 |
| BsuRI | GGCC | 8 cut(s) | 152, 239, 855, 1571, 1616, 1964, 2091, 2648 |
| BsuTUI | ATCGAT | 1 cut(s) | 471 |
| BtgI | CCRYGG | 1 cut(s) | 198 |
| BtsCI | GGATG | 6 cut(s) | 56, 452, 1162, 1869, 2779, 2791 |
| BtsI | GCAGTG | 5 cut(s) | 920, 1066, 2697, 2853, 2926 |
| BveI | ACCTGC | 1 cut(s) | 2586 |
| Cac8I | GCNNGC | 5 cut(s) | 127, 955, 1999, 2187, 2964 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1316 |
| CciI | TCATGA | 2 cut(s) | 2451, 2562 |
| CfoI | GCGC | 2 cut(s) | 313, 1625 |
| Cfr10I | RCCGGY | 1 cut(s) | 1233 |
| Cfr13I | GGNCC | 6 cut(s) | 408, 662, 1236, 1569, 2089, 2646 |
| ClaI | ATCGAT | 1 cut(s) | 471 |
| Csp6I | GTAC | 8 cut(s) | 83, 509, 694, 992, 1099, 1595, 1697, 1864 |
| CspAI | ACCGGT | 1 cut(s) | 1233 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2673, 2708 |
| CviQI | GTAC | 8 cut(s) | 83, 509, 694, 992, 1099, 1595, 1697, 1864 |
| DdeI | CTNAG | 9 cut(s) | 66, 86, 579, 958, 1405, 1944, 2160, 2178, 3018 |
| EaeI | YGGCCR | 4 cut(s) | 150, 237, 853, 1614 |
| Eam1104I | CTCTTC | 5 cut(s) | 1485, 1707, 2253, 2299, 2515 |
| EarI | CTCTTC | 5 cut(s) | 1485, 1707, 2253, 2299, 2515 |
| Ecl136II | GAGCTC | 1 cut(s) | 2154 |
| Eco130I | CCWWGG | 3 cut(s) | 198, 969, 1519 |
| Eco24I | GRGCYC | 1 cut(s) | 2156 |
| Eco31I | GGTCTC | 2 cut(s) | 372, 1385 |
| Eco47I | GGWCC | 3 cut(s) | 408, 662, 1236 |
| Eco53kI | GAGCTC | 1 cut(s) | 2154 |
| Eco57I | CTGAAG | 7 cut(s) | 475, 1500, 1584, 1833, 2013, 2496, 2919 |
| EcoICRI | GAGCTC | 1 cut(s) | 2154 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 784 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1569, 2646 |
| EcoT14I | CCWWGG | 3 cut(s) | 198, 969, 1519 |
| EcoT22I | ATGCAT | 1 cut(s) | 1369 |
| EcoT38I | GRGCYC | 1 cut(s) | 2156 |
| ErhI | CCWWGG | 3 cut(s) | 198, 969, 1519 |
| Esp3I | CGTCTC | 1 cut(s) | 2156 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 859, 891 |
| FaqI | GGGAC | 1 cut(s) | 394 |
| FauI | CCCGC | 1 cut(s) | 962 |
| FauNDI | CATATG | 1 cut(s) | 1360 |
| FbaI | TGATCA | 2 cut(s) | 1335, 2923 |
| Fnu4HI | GCNGC | 8 cut(s) | 314, 936, 1626, 1767, 1770, 2052, 2745, 2876 |
| FokI | GGATG | 6 cut(s) | 43, 439, 1169, 1856, 2786, 2798 |
| FriOI | GRGCYC | 1 cut(s) | 2156 |
| Fsp4HI | GCNGC | 8 cut(s) | 314, 936, 1626, 1767, 1770, 2052, 2745, 2876 |
| GlaI | GCGC | 2 cut(s) | 312, 1624 |
| GluI | GCNGC | 8 cut(s) | 314, 936, 1626, 1767, 1770, 2052, 2745, 2876 |
| GsuI | CTGGAG | 3 cut(s) | 338, 666, 1338 |
| HaeIII | GGCC | 8 cut(s) | 152, 239, 855, 1571, 1616, 1964, 2091, 2648 |
| HapII | CCGG | 3 cut(s) | 1234, 1819, 2633 |
| HhaI | GCGC | 2 cut(s) | 313, 1625 |
| Hin6I | GCGC | 2 cut(s) | 311, 1623 |
| HinP1I | GCGC | 2 cut(s) | 311, 1623 |
| HincII | GTYRAC | 2 cut(s) | 2129, 2821 |
| HindII | GTYRAC | 2 cut(s) | 2129, 2821 |
| HindIII | AAGCTT | 2 cut(s) | 873, 2524 |
| HinfI | GANTC | 9 cut(s) | 34, 1449, 1793, 1927, 2109, 2370, 2503, 2516, 2725 |
| HpaI | GTTAAC | 1 cut(s) | 2821 |
| HpaII | CCGG | 3 cut(s) | 1234, 1819, 2633 |
| HphI | GGTGA | 4 cut(s) | 1223, 1407, 2070, 2630 |
| Hpy166II | GTNNAC | 8 cut(s) | 662, 728, 1825, 1864, 2129, 2638, 2791, 2821 |
| Hpy8I | GTNNAC | 8 cut(s) | 662, 728, 1825, 1864, 2129, 2638, 2791, 2821 |
| HpyAV | CCTTC | 6 cut(s) | 499, 1475, 1559, 2105, 2150, 2339 |
| HpyCH4III | ACNGT | 4 cut(s) | 76, 1126, 1835, 2071 |
| HpyCH4IV | ACGT | 1 cut(s) | 336 |
| HpyF3I | CTNAG | 9 cut(s) | 66, 86, 579, 958, 1405, 1944, 2160, 2178, 3018 |
| HpySE526I | ACGT | 1 cut(s) | 336 |
| HspAI | GCGC | 2 cut(s) | 311, 1623 |
| Ksp22I | TGATCA | 2 cut(s) | 1335, 2923 |
| KspAI | GTTAAC | 1 cut(s) | 2821 |
| LguI | GCTCTTC | 1 cut(s) | 2253 |
| LmnI | GCTCC | 3 cut(s) | 700, 1319, 2993 |
| Lsp1109I | GCAGC | 5 cut(s) | 325, 947, 1756, 2063, 2731 |
| LweI | GCATC | 8 cut(s) | 65, 414, 461, 973, 1354, 1485, 2671, 3036 |
| MaeII | ACGT | 1 cut(s) | 336 |
| MaeIII | GTNAC | 6 cut(s) | 757, 775, 1229, 1312, 1514, 1835 |
| MbiI | CCGCTC | 1 cut(s) | 957 |
| MboII | GAAGA | 9 cut(s) | 712, 751, 1502, 1724, 2048, 2240, 2316, 2502, 3034 |
| MfeI | CAATTG | 3 cut(s) | 27, 795, 2490 |
| MflI | RGATCY | 5 cut(s) | 286, 538, 561, 751, 1947 |
| MhlI | GDGCHC | 4 cut(s) | 623, 845, 2156, 2633 |
| MlsI | TGGCCA | 4 cut(s) | 152, 239, 855, 1616 |
| MluNI | TGGCCA | 4 cut(s) | 152, 239, 855, 1616 |
| MlyI | GAGTC | 5 cut(s) | 43, 1443, 1802, 2103, 2525 |
| MmeI | TCCRAC | 4 cut(s) | 319, 1045, 2478, 2751 |
| Mox20I | TGGCCA | 4 cut(s) | 152, 239, 855, 1616 |
| Mph1103I | ATGCAT | 1 cut(s) | 1369 |
| MroXI | GAANNNNTTC | 3 cut(s) | 207, 1530, 2570 |
| MscI | TGGCCA | 4 cut(s) | 152, 239, 855, 1616 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1589, 1970 |
| Msp20I | TGGCCA | 4 cut(s) | 152, 239, 855, 1616 |
| MspA1I | CMGCKG | 1 cut(s) | 316 |
| MspCI | CTTAAG | 2 cut(s) | 614, 1396 |
| MspI | CCGG | 3 cut(s) | 1234, 1819, 2633 |
| MspR9I | CCNGG | 2 cut(s) | 1820, 2633 |
| MunI | CAATTG | 3 cut(s) | 27, 795, 2490 |
| Mva1269I | GAATGC | 5 cut(s) | 270, 350, 1628, 2358, 2848 |
| MvnI | CGCG | 1 cut(s) | 1625 |
| NciI | CCSGG | 2 cut(s) | 1820, 2633 |
| NcoI | CCATGG | 1 cut(s) | 198 |
| NdeI | CATATG | 1 cut(s) | 1360 |
| NlaIV | GGNNCC | 7 cut(s) | 288, 410, 702, 753, 1458, 1570, 2647 |
| NmeAIII | GCCGAG | 1 cut(s) | 2128 |
| NmuCI | GTSAC | 3 cut(s) | 775, 1229, 1835 |
| NsiI | ATGCAT | 1 cut(s) | 1369 |
| NspI | RCATGY | 4 cut(s) | 129, 186, 1882, 2837 |
| OliI | CACNNNNGTG | 1 cut(s) | 1970 |
| PaeI | GCATGC | 1 cut(s) | 129 |
| PagI | TCATGA | 2 cut(s) | 2451, 2562 |
| PciI | ACATGT | 1 cut(s) | 2833 |
| PciSI | GCTCTTC | 1 cut(s) | 2253 |
| PctI | GAATGC | 5 cut(s) | 270, 350, 1628, 2358, 2848 |
| PdmI | GAANNNNTTC | 3 cut(s) | 207, 1530, 2570 |
| PfeI | GAWTC | 4 cut(s) | 1927, 2370, 2503, 2725 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 851 |
| PinAI | ACCGGT | 1 cut(s) | 1233 |
| PkrI | GCNGC | 8 cut(s) | 315, 937, 1627, 1768, 1771, 2053, 2746, 2877 |
| PleI | GAGTC | 5 cut(s) | 42, 1443, 1801, 2103, 2524 |
| PpsI | GAGTC | 5 cut(s) | 42, 1443, 1801, 2103, 2524 |
| PscI | ACATGT | 1 cut(s) | 2833 |
| Psp124BI | GAGCTC | 1 cut(s) | 2156 |
| PspN4I | GGNNCC | 7 cut(s) | 288, 410, 702, 753, 1458, 1570, 2647 |
| PspPI | GGNCC | 6 cut(s) | 408, 662, 1236, 1569, 2089, 2646 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1316 |
| PsuI | RGATCY | 5 cut(s) | 286, 538, 561, 751, 1947 |
| PvuII | CAGCTG | 1 cut(s) | 316 |
| RsaI | GTAC | 8 cut(s) | 84, 510, 695, 993, 1100, 1596, 1698, 1865 |
| RsaNI | GTAC | 8 cut(s) | 83, 509, 694, 992, 1099, 1595, 1697, 1864 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1589, 1970 |
| SacI | GAGCTC | 1 cut(s) | 2156 |
| SapI | GCTCTTC | 1 cut(s) | 2253 |
| SatI | GCNGC | 8 cut(s) | 314, 936, 1626, 1767, 1770, 2052, 2745, 2876 |
| Sau96I | GGNCC | 6 cut(s) | 408, 662, 1236, 1569, 2089, 2646 |
| SchI | GAGTC | 5 cut(s) | 43, 1443, 1802, 2103, 2525 |
| ScrFI | CCNGG | 2 cut(s) | 1820, 2633 |
| SduI | GDGCHC | 4 cut(s) | 623, 845, 2156, 2633 |
| SfaNI | GCATC | 8 cut(s) | 65, 414, 461, 973, 1354, 1485, 2671, 3036 |
| SinI | GGWCC | 3 cut(s) | 408, 662, 1236 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1589, 1970 |
| SmlI | CTYRAG | 8 cut(s) | 349, 447, 614, 1050, 1268, 1396, 1802, 1808 |
| SmoI | CTYRAG | 8 cut(s) | 349, 447, 614, 1050, 1268, 1396, 1802, 1808 |
| SpeI | ACTAGT | 1 cut(s) | 2704 |
| SphI | GCATGC | 1 cut(s) | 129 |
| SsiI | CCGC | 7 cut(s) | 362, 596, 955, 1625, 1766, 2540, 2875 |
| SspI | AATATT | 3 cut(s) | 837, 1071, 2263 |
| SstI | GAGCTC | 1 cut(s) | 2156 |
| StyD4I | CCNGG | 2 cut(s) | 1818, 2631 |
| StyI | CCWWGG | 3 cut(s) | 198, 969, 1519 |
| TaaI | ACNGT | 4 cut(s) | 76, 1126, 1835, 2071 |
| TaiI | ACGT | 1 cut(s) | 339 |
| TaqI | TCGA | 4 cut(s) | 471, 558, 2148, 2531 |
| TaqII | GACCGA | 2 cut(s) | 396, 476 |
| TatI | WGTACW | 4 cut(s) | 693, 1098, 1696, 1863 |
| TauI | GCSGC | 3 cut(s) | 1628, 1769, 2878 |
| TfiI | GAWTC | 4 cut(s) | 1927, 2370, 2503, 2725 |
| TseFI | GTSAC | 3 cut(s) | 775, 1229, 1835 |
| TseI | GCWGC | 5 cut(s) | 313, 935, 1769, 2051, 2744 |
| Tsp45I | GTSAC | 3 cut(s) | 775, 1229, 1835 |
| TspGWI | ACGGA | 1 cut(s) | 842 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 851 |
| Vha464I | CTTAAG | 2 cut(s) | 614, 1396 |
| VpaK11BI | GGWCC | 3 cut(s) | 408, 662, 1236 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 784 |
| XapI | RAATTY | 6 cut(s) | 193, 204, 1731, 2201, 2295, 2422 |
| XceI | RCATGY | 4 cut(s) | 129, 186, 1882, 2837 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 247, 1975, 2993 |
| XmnI | GAANNNNTTC | 3 cut(s) | 207, 1530, 2570 |
| Zsp2I | ATGCAT | 1 cut(s) | 1369 |