U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68940 AT1G68940 AT1G68940 |
| fragaria_vesca | FvH4_4g28940 |
| malus_domestica | MD13G1055000.v1.1 |
| prunus_persica | Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 |
| pyrus_communis | pycom16g04680 |
| rosa_chinensis | RchiOBHm_Chr4g0437081 |
| rosa_laevigata | RLG00000006470 |
| rosa_multiflora | Rmu_ssc0000006.1_g000011 |
| rosa_roxburghii | Rroxscaffold_5G00378160 |
| rosa_rugosa | Rorug04G0298000 |
| rosa_samantha | Rh4AG352700 Rh4BG362000 Rh4CG376300 Rh4DG356200 |
| rosa_wichuraiana | Rw4G030880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2334, 2607 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 872 |
| AccBSI | CCGCTC | 1 cut(s) | 978 |
| AccIII | TCCGGA | 1 cut(s) | 1746 |
| AciI | CCGC | 3 cut(s) | 617, 976, 2561 |
| AclWI | GGATC | 7 cut(s) | 302, 315, 567, 767, 780, 1336, 1963 |
| AcoI | YGGCCR | 4 cut(s) | 171, 258, 874, 1635 |
| AcsI | RAATTY | 3 cut(s) | 225, 2222, 2316 |
| AcuI | CTGAAG | 8 cut(s) | 8, 496, 1380, 1521, 1605, 1854, 2034, 2940 |
| AfaI | GTAC | 6 cut(s) | 716, 1014, 1121, 1617, 1719, 1886 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 160, 707, 807, 872, 2108 |
| AflII | CTTAAG | 2 cut(s) | 635, 1417 |
| AflIII | ACRYGT | 1 cut(s) | 2854 |
| AhlI | ACTAGT | 1 cut(s) | 2725 |
| AjnI | CCWGG | 3 cut(s) | 959, 1527, 1839 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 276, 308, 1539, 1571 |
| Alw21I | GWGCWC | 2 cut(s) | 644, 2177 |
| Alw26I | GTCTC | 6 cut(s) | 393, 728, 1406, 2003, 2122, 2177 |
| AlwI | GGATC | 7 cut(s) | 302, 315, 567, 767, 780, 1336, 1963 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1337 |
| Aor13HI | TCCGGA | 1 cut(s) | 1746 |
| AoxI | GGCC | 5 cut(s) | 171, 258, 874, 1635, 2110 |
| ApeKI | GCWGC | 7 cut(s) | 334, 956, 1646, 1787, 1790, 2072, 2765 |
| ApoI | RAATTY | 3 cut(s) | 225, 2222, 2316 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 228, 1551, 2591 |
| AspLEI | GCGC | 2 cut(s) | 334, 422 |
| AspS9I | GGNCC | 3 cut(s) | 429, 683, 2110 |
| AsuHPI | GGTGA | 4 cut(s) | 1244, 1428, 2091, 2651 |
| AvaII | GGWCC | 2 cut(s) | 429, 683 |
| BaeGI | GKGCMC | 2 cut(s) | 866, 2654 |
| BalI | TGGCCA | 4 cut(s) | 173, 260, 876, 1637 |
| BamHI | GGATCC | 2 cut(s) | 307, 772 |
| BanII | GRGCYC | 1 cut(s) | 2177 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2579, 2611 |
| BauI | CACGAG | 1 cut(s) | 1472 |
| BbsI | GAAGAC | 1 cut(s) | 14 |
| Bbv12I | GWGCWC | 2 cut(s) | 644, 2177 |
| BbvI | GCAGC | 7 cut(s) | 346, 968, 1658, 1777, 1799, 2084, 2752 |
| BccI | CCATC | 4 cut(s) | 394, 1165, 3015, 3028 |
| BciT130I | CCWGG | 3 cut(s) | 961, 1529, 1841 |
| BclI | TGATCA | 2 cut(s) | 1356, 2944 |
| BcoDI | GTCTC | 6 cut(s) | 393, 728, 1406, 2003, 2122, 2177 |
| BcuI | ACTAGT | 1 cut(s) | 2725 |
| BfmI | CTRYAG | 1 cut(s) | 2451 |
| BfrI | CTTAAG | 2 cut(s) | 635, 1417 |
| BfuAI | ACCTGC | 2 cut(s) | 2334, 2607 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 288 |
| BglII | AGATCT | 1 cut(s) | 582 |
| BisI | GCNGC | 8 cut(s) | 335, 617, 957, 1647, 1788, 1791, 2073, 2766 |
| BlpI | GCTNAGC | 1 cut(s) | 979 |
| BlsI | GCNGC | 8 cut(s) | 336, 618, 958, 1648, 1789, 1792, 2074, 2767 |
| Bme1390I | CCNGG | 3 cut(s) | 961, 1529, 1841 |
| Bme18I | GGWCC | 2 cut(s) | 429, 683 |
| BmgT120I | GGNCC | 3 cut(s) | 429, 683, 2110 |
| BmiI | GGNNCC | 6 cut(s) | 309, 431, 723, 774, 1479, 2668 |
| BmrFI | CCNGG | 3 cut(s) | 961, 1529, 1841 |
| BmsI | GCATC | 8 cut(s) | 86, 435, 482, 994, 1280, 1375, 2692, 3057 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2902 |
| BpiI | GAAGAC | 1 cut(s) | 14 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2513, 2545 |
| BpmI | CTGGAG | 4 cut(s) | 359, 687, 1359, 1823 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 979 |
| BpuEI | CTTGAG | 7 cut(s) | 14, 391, 453, 1056, 1310, 1844, 1850 |
| BsaAI | YACGTR | 1 cut(s) | 358 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1742 |
| BsaI | GGTCTC | 2 cut(s) | 393, 1406 |
| BsaJI | CCNNGG | 4 cut(s) | 219, 990, 1540, 2662 |
| BsaWI | WCCGGW | 1 cut(s) | 1746 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 685, 713, 715, 743 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 160, 707, 807, 872, 2108 |
| Bse1I | ACTGG | 7 cut(s) | 704, 776, 847, 877, 1255, 1342, 1638 |
| Bse3DI | GCAATG | 5 cut(s) | 695, 1014, 1097, 1274, 2067 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1742 |
| BseAI | TCCGGA | 1 cut(s) | 1746 |
| BseBI | CCWGG | 3 cut(s) | 961, 1529, 1841 |
| BseDI | CCNNGG | 4 cut(s) | 219, 990, 1540, 2662 |
| BseGI | GGATG | 7 cut(s) | 77, 473, 1183, 1743, 1890, 2800, 2812 |
| BseJI | GATNNNNATC | 1 cut(s) | 1742 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 160, 707, 807, 872, 2108 |
| BseMI | GCAATG | 5 cut(s) | 695, 1014, 1097, 1274, 2067 |
| BseMII | CTCAG | 7 cut(s) | 78, 614, 861, 993, 2172, 2190, 3030 |
| BseNI | ACTGG | 7 cut(s) | 704, 776, 847, 877, 1255, 1342, 1638 |
| BseRI | GAGGAG | 6 cut(s) | 356, 683, 1663, 2647, 2650, 2679 |
| BseSI | GKGCMC | 2 cut(s) | 866, 2654 |
| BseXI | GCAGC | 7 cut(s) | 346, 968, 1658, 1777, 1799, 2084, 2752 |
| BseYI | CCCAGC | 1 cut(s) | 3071 |
| BsgI | GTGCAG | 1 cut(s) | 1665 |
| BshFI | GGCC | 5 cut(s) | 173, 260, 876, 1637, 2112 |
| BsiHKAI | GWGCWC | 2 cut(s) | 644, 2177 |
| BsiSI | CCGG | 1 cut(s) | 1747 |
| BslFI | GGGAC | 1 cut(s) | 415 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 160, 707, 807, 872, 2108 |
| BsmAI | GTCTC | 6 cut(s) | 393, 728, 1406, 2003, 2122, 2177 |
| BsmFI | GGGAC | 1 cut(s) | 415 |
| BsmI | GAATGC | 5 cut(s) | 134, 291, 1649, 2379, 2869 |
| BsnI | GGCC | 5 cut(s) | 173, 260, 876, 1637, 2112 |
| Bso31I | GGTCTC | 2 cut(s) | 393, 1406 |
| Bsp1286I | GDGCHC | 4 cut(s) | 644, 866, 2177, 2654 |
| Bsp13I | TCCGGA | 1 cut(s) | 1746 |
| Bsp1407I | TGTACA | 2 cut(s) | 1717, 1884 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 979 |
| Bsp19I | CCATGG | 1 cut(s) | 219 |
| BspACI | CCGC | 3 cut(s) | 617, 976, 2561 |
| BspANI | GGCC | 5 cut(s) | 173, 260, 876, 1637, 2112 |
| BspCNI | CTCAG | 7 cut(s) | 79, 613, 860, 992, 2173, 2191, 3031 |
| BspEI | TCCGGA | 1 cut(s) | 1746 |
| BspHI | TCATGA | 2 cut(s) | 2472, 2583 |
| BspLI | GGNNCC | 6 cut(s) | 309, 431, 723, 774, 1479, 2668 |
| BspMAI | CTGCAG | 1 cut(s) | 2455 |
| BspMI | ACCTGC | 2 cut(s) | 2334, 2607 |
| BspPI | GGATC | 7 cut(s) | 302, 315, 567, 767, 780, 1336, 1963 |
| BspQI | GCTCTTC | 1 cut(s) | 2274 |
| BspTI | CTTAAG | 2 cut(s) | 635, 1417 |
| BspTNI | GGTCTC | 2 cut(s) | 393, 1406 |
| BsrBI | CCGCTC | 1 cut(s) | 978 |
| BsrDI | GCAATG | 5 cut(s) | 695, 1014, 1097, 1274, 2067 |
| BsrGI | TGTACA | 2 cut(s) | 1717, 1884 |
| BsrI | ACTGG | 7 cut(s) | 704, 776, 847, 877, 1255, 1342, 1638 |
| BssECI | CCNNGG | 4 cut(s) | 219, 990, 1540, 2662 |
| BssSI | CACGAG | 1 cut(s) | 1472 |
| BssT1I | CCWWGG | 3 cut(s) | 219, 990, 1540 |
| Bst2BI | CACGAG | 1 cut(s) | 1472 |
| Bst2UI | CCWGG | 3 cut(s) | 961, 1529, 1841 |
| Bst4CI | ACNGT | 5 cut(s) | 97, 1147, 1377, 1856, 2092 |
| Bst6I | CTCTTC | 5 cut(s) | 1506, 1728, 2274, 2320, 2536 |
| BstAFI | CTTAAG | 2 cut(s) | 635, 1417 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1799 |
| BstAUI | TGTACA | 2 cut(s) | 1717, 1884 |
| BstBAI | YACGTR | 1 cut(s) | 358 |
| BstC8I | GCNNGC | 6 cut(s) | 148, 976, 1269, 2020, 2208, 2985 |
| BstDEI | CTNAG | 9 cut(s) | 87, 600, 847, 979, 1426, 1965, 2181, 2199, 3039 |
| BstDSI | CCRYGG | 1 cut(s) | 219 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 805 |
| BstF5I | GGATG | 7 cut(s) | 77, 473, 1183, 1743, 1890, 2800, 2812 |
| BstHHI | GCGC | 2 cut(s) | 334, 422 |
| BstMAI | GTCTC | 6 cut(s) | 393, 728, 1406, 2003, 2122, 2177 |
| BstNI | CCWGG | 3 cut(s) | 961, 1529, 1841 |
| BstNSI | RCATGY | 5 cut(s) | 150, 207, 1271, 1903, 2858 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2902 |
| BstSCI | CCNGG | 3 cut(s) | 959, 1527, 1839 |
| BstSFI | CTRYAG | 1 cut(s) | 2451 |
| BstSLI | GKGCMC | 2 cut(s) | 866, 2654 |
| BstV1I | GCAGC | 7 cut(s) | 346, 968, 1658, 1777, 1799, 2084, 2752 |
| BstV2I | GAAGAC | 1 cut(s) | 14 |
| BstX2I | RGATCY | 5 cut(s) | 307, 559, 582, 772, 1968 |
| BstYI | RGATCY | 5 cut(s) | 307, 559, 582, 772, 1968 |
| BsuRI | GGCC | 5 cut(s) | 173, 260, 876, 1637, 2112 |
| BtgI | CCRYGG | 1 cut(s) | 219 |
| BtsCI | GGATG | 7 cut(s) | 77, 473, 1183, 1743, 1890, 2800, 2812 |
| BtsI | GCAGTG | 6 cut(s) | 941, 1087, 2448, 2718, 2874, 2947 |
| BveI | ACCTGC | 2 cut(s) | 2334, 2607 |
| Cac8I | GCNNGC | 6 cut(s) | 148, 976, 1269, 2020, 2208, 2985 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1337 |
| CciI | TCATGA | 2 cut(s) | 2472, 2583 |
| CfoI | GCGC | 2 cut(s) | 334, 422 |
| Cfr13I | GGNCC | 3 cut(s) | 429, 683, 2110 |
| Csp6I | GTAC | 6 cut(s) | 715, 1013, 1120, 1616, 1718, 1885 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2694, 2729 |
| CviQI | GTAC | 6 cut(s) | 715, 1013, 1120, 1616, 1718, 1885 |
| DdeI | CTNAG | 9 cut(s) | 87, 600, 847, 979, 1426, 1965, 2181, 2199, 3039 |
| EaeI | YGGCCR | 4 cut(s) | 171, 258, 874, 1635 |
| Eam1104I | CTCTTC | 5 cut(s) | 1506, 1728, 2274, 2320, 2536 |
| EarI | CTCTTC | 5 cut(s) | 1506, 1728, 2274, 2320, 2536 |
| Ecl136II | GAGCTC | 1 cut(s) | 2175 |
| Eco130I | CCWWGG | 3 cut(s) | 219, 990, 1540 |
| Eco24I | GRGCYC | 1 cut(s) | 2177 |
| Eco31I | GGTCTC | 2 cut(s) | 393, 1406 |
| Eco47I | GGWCC | 2 cut(s) | 429, 683 |
| Eco53kI | GAGCTC | 1 cut(s) | 2175 |
| Eco57I | CTGAAG | 8 cut(s) | 8, 496, 1380, 1521, 1605, 1854, 2034, 2940 |
| EcoICRI | GAGCTC | 1 cut(s) | 2175 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 805 |
| EcoRII | CCWGG | 3 cut(s) | 959, 1527, 1839 |
| EcoT14I | CCWWGG | 3 cut(s) | 219, 990, 1540 |
| EcoT22I | ATGCAT | 2 cut(s) | 1273, 1390 |
| EcoT38I | GRGCYC | 1 cut(s) | 2177 |
| ErhI | CCWWGG | 3 cut(s) | 219, 990, 1540 |
| FaqI | GGGAC | 1 cut(s) | 415 |
| FauI | CCCGC | 1 cut(s) | 983 |
| FauNDI | CATATG | 2 cut(s) | 1381, 2106 |
| FbaI | TGATCA | 2 cut(s) | 1356, 2944 |
| Fnu4HI | GCNGC | 8 cut(s) | 335, 617, 957, 1647, 1788, 1791, 2073, 2766 |
| FokI | GGATG | 7 cut(s) | 64, 460, 1190, 1730, 1877, 2807, 2819 |
| FriOI | GRGCYC | 1 cut(s) | 2177 |
| Fsp4HI | GCNGC | 8 cut(s) | 335, 617, 957, 1647, 1788, 1791, 2073, 2766 |
| GlaI | GCGC | 2 cut(s) | 333, 421 |
| GluI | GCNGC | 8 cut(s) | 335, 617, 957, 1647, 1788, 1791, 2073, 2766 |
| GsaI | CCCAGC | 1 cut(s) | 3075 |
| GsuI | CTGGAG | 4 cut(s) | 359, 687, 1359, 1823 |
| HaeIII | GGCC | 5 cut(s) | 173, 260, 876, 1637, 2112 |
| HapII | CCGG | 1 cut(s) | 1747 |
| HhaI | GCGC | 2 cut(s) | 334, 422 |
| Hin6I | GCGC | 2 cut(s) | 332, 420 |
| HinP1I | GCGC | 2 cut(s) | 332, 420 |
| HincII | GTYRAC | 2 cut(s) | 2150, 2842 |
| HindII | GTYRAC | 2 cut(s) | 2150, 2842 |
| HindIII | AAGCTT | 2 cut(s) | 894, 2545 |
| HinfI | GANTC | 9 cut(s) | 55, 1140, 1470, 1814, 2130, 2391, 2524, 2537, 2746 |
| HpaI | GTTAAC | 1 cut(s) | 2842 |
| HpaII | CCGG | 1 cut(s) | 1747 |
| HphI | GGTGA | 4 cut(s) | 1244, 1428, 2091, 2651 |
| Hpy166II | GTNNAC | 9 cut(s) | 683, 749, 1756, 1846, 1885, 2150, 2659, 2812, 2842 |
| Hpy8I | GTNNAC | 9 cut(s) | 683, 749, 1756, 1846, 1885, 2150, 2659, 2812, 2842 |
| HpyCH4III | ACNGT | 5 cut(s) | 97, 1147, 1377, 1856, 2092 |
| HpyCH4IV | ACGT | 1 cut(s) | 357 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 600, 847, 979, 1426, 1965, 2181, 2199, 3039 |
| HpySE526I | ACGT | 1 cut(s) | 357 |
| HspAI | GCGC | 2 cut(s) | 332, 420 |
| Kpn2I | TCCGGA | 1 cut(s) | 1746 |
| Ksp22I | TGATCA | 2 cut(s) | 1356, 2944 |
| KspAI | GTTAAC | 1 cut(s) | 2842 |
| LguI | GCTCTTC | 1 cut(s) | 2274 |
| LmnI | GCTCC | 4 cut(s) | 721, 1340, 2666, 3014 |
| Lsp1109I | GCAGC | 7 cut(s) | 346, 968, 1658, 1777, 1799, 2084, 2752 |
| LweI | GCATC | 8 cut(s) | 86, 435, 482, 994, 1280, 1375, 2692, 3057 |
| MaeII | ACGT | 1 cut(s) | 357 |
| MaeIII | GTNAC | 7 cut(s) | 778, 796, 1250, 1333, 1535, 1856, 2082 |
| MbiI | CCGCTC | 1 cut(s) | 978 |
| MboII | GAAGA | 9 cut(s) | 14, 733, 772, 1523, 1745, 2069, 2261, 2337, 2523 |
| MfeI | CAATTG | 4 cut(s) | 48, 816, 927, 2511 |
| MflI | RGATCY | 5 cut(s) | 307, 559, 582, 772, 1968 |
| MhlI | GDGCHC | 4 cut(s) | 644, 866, 2177, 2654 |
| MlsI | TGGCCA | 4 cut(s) | 173, 260, 876, 1637 |
| MluNI | TGGCCA | 4 cut(s) | 173, 260, 876, 1637 |
| MlyI | GAGTC | 5 cut(s) | 64, 1464, 1823, 2124, 2546 |
| MmeI | TCCRAC | 3 cut(s) | 1066, 2499, 2772 |
| Mox20I | TGGCCA | 4 cut(s) | 173, 260, 876, 1637 |
| Mph1103I | ATGCAT | 2 cut(s) | 1273, 1390 |
| MroI | TCCGGA | 1 cut(s) | 1746 |
| MroXI | GAANNNNTTC | 3 cut(s) | 228, 1551, 2591 |
| MscI | TGGCCA | 4 cut(s) | 173, 260, 876, 1637 |
| MseI | TTAA | 9 cut(s) | 608, 636, 689, 966, 1365, 1418, 2259, 2841, 3085 |
| Msp20I | TGGCCA | 4 cut(s) | 173, 260, 876, 1637 |
| MspA1I | CMGCKG | 2 cut(s) | 337, 1790 |
| MspCI | CTTAAG | 2 cut(s) | 635, 1417 |
| MspI | CCGG | 1 cut(s) | 1747 |
| MspR9I | CCNGG | 3 cut(s) | 961, 1529, 1841 |
| MunI | CAATTG | 4 cut(s) | 48, 816, 927, 2511 |
| Mva1269I | GAATGC | 5 cut(s) | 134, 291, 1649, 2379, 2869 |
| MvaI | CCWGG | 3 cut(s) | 961, 1529, 1841 |
| NcoI | CCATGG | 1 cut(s) | 219 |
| NdeI | CATATG | 2 cut(s) | 1381, 2106 |
| NlaIV | GGNNCC | 6 cut(s) | 309, 431, 723, 774, 1479, 2668 |
| NmeAIII | GCCGAG | 1 cut(s) | 2149 |
| NmuCI | GTSAC | 2 cut(s) | 1250, 1856 |
| NsiI | ATGCAT | 2 cut(s) | 1273, 1390 |
| NspI | RCATGY | 5 cut(s) | 150, 207, 1271, 1903, 2858 |
| PaeI | GCATGC | 2 cut(s) | 150, 1271 |
| PagI | TCATGA | 2 cut(s) | 2472, 2583 |
| PciI | ACATGT | 1 cut(s) | 2854 |
| PciSI | GCTCTTC | 1 cut(s) | 2274 |
| PctI | GAATGC | 5 cut(s) | 134, 291, 1649, 2379, 2869 |
| PdmI | GAANNNNTTC | 3 cut(s) | 228, 1551, 2591 |
| PfeI | GAWTC | 4 cut(s) | 1140, 2391, 2524, 2746 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 872 |
| PkrI | GCNGC | 8 cut(s) | 336, 618, 958, 1648, 1789, 1792, 2074, 2767 |
| PleI | GAGTC | 5 cut(s) | 63, 1464, 1822, 2124, 2545 |
| PpsI | GAGTC | 5 cut(s) | 63, 1464, 1822, 2124, 2545 |
| Ppu21I | YACGTR | 1 cut(s) | 358 |
| PscI | ACATGT | 1 cut(s) | 2854 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2902 |
| Psp124BI | GAGCTC | 1 cut(s) | 2177 |
| Psp6I | CCWGG | 3 cut(s) | 959, 1527, 1839 |
| PspFI | CCCAGC | 1 cut(s) | 3071 |
| PspGI | CCWGG | 3 cut(s) | 959, 1527, 1839 |
| PspN4I | GGNNCC | 6 cut(s) | 309, 431, 723, 774, 1479, 2668 |
| PspPI | GGNCC | 3 cut(s) | 429, 683, 2110 |
| PstI | CTGCAG | 1 cut(s) | 2455 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1337 |
| PsuI | RGATCY | 5 cut(s) | 307, 559, 582, 772, 1968 |
| PvuII | CAGCTG | 2 cut(s) | 337, 1790 |
| RsaI | GTAC | 6 cut(s) | 716, 1014, 1121, 1617, 1719, 1886 |
| RsaNI | GTAC | 6 cut(s) | 715, 1013, 1120, 1616, 1718, 1885 |
| SacI | GAGCTC | 1 cut(s) | 2177 |
| SapI | GCTCTTC | 1 cut(s) | 2274 |
| SaqAI | TTAA | 9 cut(s) | 608, 636, 689, 966, 1365, 1418, 2259, 2841, 3085 |
| SatI | GCNGC | 8 cut(s) | 335, 617, 957, 1647, 1788, 1791, 2073, 2766 |
| Sau96I | GGNCC | 3 cut(s) | 429, 683, 2110 |
| SchI | GAGTC | 5 cut(s) | 64, 1464, 1823, 2124, 2546 |
| ScrFI | CCNGG | 3 cut(s) | 961, 1529, 1841 |
| SduI | GDGCHC | 4 cut(s) | 644, 866, 2177, 2654 |
| SfaNI | GCATC | 8 cut(s) | 86, 435, 482, 994, 1280, 1375, 2692, 3057 |
| SfcI | CTRYAG | 1 cut(s) | 2451 |
| SinI | GGWCC | 2 cut(s) | 429, 683 |
| SmlI | CTYRAG | 9 cut(s) | 29, 370, 468, 635, 1071, 1289, 1417, 1823, 1829 |
| SmoI | CTYRAG | 9 cut(s) | 29, 370, 468, 635, 1071, 1289, 1417, 1823, 1829 |
| SpeI | ACTAGT | 1 cut(s) | 2725 |
| SphI | GCATGC | 2 cut(s) | 150, 1271 |
| SsiI | CCGC | 3 cut(s) | 617, 976, 2561 |
| SspI | AATATT | 3 cut(s) | 858, 1092, 2284 |
| SstI | GAGCTC | 1 cut(s) | 2177 |
| StyD4I | CCNGG | 3 cut(s) | 959, 1527, 1839 |
| StyI | CCWWGG | 3 cut(s) | 219, 990, 1540 |
| TaaI | ACNGT | 5 cut(s) | 97, 1147, 1377, 1856, 2092 |
| TaiI | ACGT | 1 cut(s) | 360 |
| TaqI | TCGA | 4 cut(s) | 579, 1259, 2169, 2552 |
| TaqII | GACCGA | 1 cut(s) | 417 |
| TatI | WGTACW | 4 cut(s) | 714, 1119, 1717, 1884 |
| TauI | GCSGC | 1 cut(s) | 619 |
| TfiI | GAWTC | 4 cut(s) | 1140, 2391, 2524, 2746 |
| Tru1I | TTAA | 9 cut(s) | 608, 636, 689, 966, 1365, 1418, 2259, 2841, 3085 |
| Tru9I | TTAA | 9 cut(s) | 608, 636, 689, 966, 1365, 1418, 2259, 2841, 3085 |
| TseFI | GTSAC | 2 cut(s) | 1250, 1856 |
| TseI | GCWGC | 7 cut(s) | 334, 956, 1646, 1787, 1790, 2072, 2765 |
| Tsp45I | GTSAC | 2 cut(s) | 1250, 1856 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 872 |
| Vha464I | CTTAAG | 2 cut(s) | 635, 1417 |
| VpaK11BI | GGWCC | 2 cut(s) | 429, 683 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 805 |
| XapI | RAATTY | 3 cut(s) | 225, 2222, 2316 |
| XceI | RCATGY | 5 cut(s) | 150, 207, 1271, 1903, 2858 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 268, 1996, 3014 |
| XmnI | GAANNNNTTC | 3 cut(s) | 228, 1551, 2591 |
| Zsp2I | ATGCAT | 2 cut(s) | 1273, 1390 |