RchiOBHm_Chr4g0437081

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012314
Physical Location & Seq
Reverse (-)
60276760 .. 60277539
780 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40535

Sequence Viewer

Length: 780 bp
ATGAATCAAATTCAAAGAAGAGGAACAAGATCAAGCAGGTTTGAAAGCACTTACTTTGAAGGTCTAGTGGGCATTCTAGTCAGATTCACTACAACACTATATGAACCTCAAATGTTGTTTCTAGCAAGAAACCAGAATTTCACAGCAGTTTTCACAGAACTGCTCATGAAAACATCAAGTGATGAAGTTCAGAGGTTATCAGCAATTGGGTTGGAGAATCTCTCTTCGGAGTCAATAAGCTTATCGAAACCACCGCAGATCAAGAGAAAAAAGTTCATGAAGTTGTTCTACCTGCCTAAATATCTATCTTTTGGCTATTCAAGGAGGAGGAGAATACCATTGTGCCCTGTTCACCGAGGAGCCTGTTCCTCTCAAAACACCTTCTGCATAGTTGATGCAAAGGCAGTGGAGAAGCTACTAGTCTGTTTGGAAAACGAGAATCCAGAGGTTGTTGAAGCTGCATTGTCAGCTATAAGCACTTTGTTGGATGACAAGGTGGATGTGGACAAGTCTGTGAGTATGTTGAGTGAGGTTAACGCTGTGCAACATGTTTTGAATGCAGTGAAAGAGCATAGGCAAGAGGGATTGCGGCAGAAGTCATTTTGGGTGCTTGAAAAGTTCTTGAATAAAGGCAGTGATCAGTCTGCTTCAGATATATCAAATGACAGGGTGTTGCCTGCTATATTGGTCAGTGCTTTCCATCATGGAGCTGGAAATACTAGGCAGATGGCTGAGAGGATTTTGAGGCATTTGAATAAGATGCCCAACCTCTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

259

Amino Acids

29.44

Weight (kDa)

9.47

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arm PF00514 123 - 161 6e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68940 AT1G68940 AT1G68940
fragaria_vesca FvH4_4g28940
malus_domestica MD13G1055000.v1.1
prunus_persica Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1
pyrus_communis pycom16g04680
rosa_chinensis RchiOBHm_Chr4g0437081
rosa_laevigata RLG00000006470
rosa_multiflora Rmu_ssc0000006.1_g000011
rosa_roxburghii Rroxscaffold_5G00378160
rosa_rugosa Rorug04G0298000
rosa_samantha Rh4AG352700 Rh4BG362000 Rh4CG376300 Rh4DG356200
rosa_wichuraiana Rw4G030880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 27, 300
AciI CCGC 2 cut(s) 254, 589
AcsI RAATTY 2 cut(s) 9, 136
AcuI CTGAAG 1 cut(s) 633
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 9 cut(s) 14, 44, 59, 321, 455, 556, 614, 625, 754
AhlI ACTAGT 1 cut(s) 418
AluBI AGCT 5 cut(s) 240, 415, 458, 470, 710
AluI AGCT 5 cut(s) 240, 415, 458, 470, 710
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 2 cut(s) 9, 136
Asp700I GAANNNNTTC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 347
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 708, 721
BclI TGATCA 1 cut(s) 637
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 5 cut(s) 65, 77, 122, 419, 720
BfuAI ACCTGC 2 cut(s) 27, 300
BisI GCNGC 2 cut(s) 459, 590
BlsI GCNGC 2 cut(s) 460, 591
BmiI GGNNCC 1 cut(s) 361
BmsI GCATC 2 cut(s) 385, 750
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BsaJI CCNNGG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 493, 505
BseMII CTCAG 1 cut(s) 723
BseRI GAGGAG 3 cut(s) 340, 343, 372
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 1 cut(s) 445
BsmI GAATGC 2 cut(s) 72, 562
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 3 cut(s) 29, 258, 637
BspACI CCGC 2 cut(s) 254, 589
BspCNI CTCAG 1 cut(s) 724
BspHI TCATGA 2 cut(s) 165, 276
BspLI GGNNCC 1 cut(s) 361
BspMI ACCTGC 2 cut(s) 27, 300
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 29, 258, 637
Bst6I CTCTTC 2 cut(s) 13, 229
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 1 cut(s) 732
BstF5I GGATG 2 cut(s) 493, 505
BstKTI GATC 3 cut(s) 32, 261, 640
BstMBI GATC 3 cut(s) 29, 258, 637
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 551
BstSLI GKGCMC 1 cut(s) 347
BstV1I GCAGC 1 cut(s) 445
BtsCI GGATG 2 cut(s) 493, 505
BtsI GCAGTG 3 cut(s) 411, 567, 640
BtsIMutI CAGTG 4 cut(s) 411, 567, 640, 697
BveI ACCTGC 2 cut(s) 27, 300
Cac8I GCNNGC 1 cut(s) 678
CciI TCATGA 2 cut(s) 165, 276
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 4 cut(s) 166, 277, 548, 704
CviJI RGCY 8 cut(s) 240, 315, 362, 415, 458, 470, 710, 731
CviKI_1 RGCY 8 cut(s) 240, 315, 362, 415, 458, 470, 710, 731
DdeI CTNAG 1 cut(s) 732
DpnI GATC 3 cut(s) 31, 260, 639
DpnII GATC 3 cut(s) 29, 258, 637
Eam1104I CTCTTC 2 cut(s) 13, 229
EarI CTCTTC 2 cut(s) 13, 229
Eco57I CTGAAG 1 cut(s) 633
FaeI CATG 4 cut(s) 169, 280, 551, 707
FatI CATG 4 cut(s) 165, 276, 547, 703
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 2 cut(s) 459, 590
FokI GGATG 2 cut(s) 500, 512
Fsp4HI GCNGC 2 cut(s) 459, 590
FspBI CTAG 5 cut(s) 65, 77, 122, 419, 720
GluI GCNGC 2 cut(s) 459, 590
Hin1II CATG 4 cut(s) 169, 280, 551, 707
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 5 cut(s) 4, 84, 217, 230, 439
HpaI GTTAAC 1 cut(s) 535
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 3 cut(s) 352, 505, 535
Hpy188I TCNGA 4 cut(s) 83, 192, 229, 652
Hpy188III TCNNGA 5 cut(s) 166, 262, 277, 443, 622
Hpy8I GTNNAC 3 cut(s) 352, 505, 535
HpyAV CCTTC 2 cut(s) 53, 391
HpyCH4V TGCA 5 cut(s) 387, 398, 461, 544, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 1 cut(s) 732
Hsp92II CATG 4 cut(s) 169, 280, 551, 707
Ksp22I TGATCA 1 cut(s) 637
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 3 cut(s) 29, 258, 637
LmnI GCTCC 2 cut(s) 359, 707
LpnPI CCDG 9 cut(s) 22, 146, 305, 360, 376, 456, 652, 690, 696
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 2 cut(s) 385, 750
MaeI CTAG 5 cut(s) 65, 77, 122, 419, 720
MalI GATC 3 cut(s) 31, 260, 639
MboI GATC 3 cut(s) 29, 258, 637
MboII GAAGA 2 cut(s) 30, 216
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 4 cut(s) 9, 136, 204, 775
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 192, 465
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 2 cut(s) 534, 778
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 2 cut(s) 72, 562
MwoI GCNNNNNNNGC 1 cut(s) 467
NdeII GATC 3 cut(s) 29, 258, 637
NlaIII CATG 4 cut(s) 169, 280, 551, 707
NlaIV GGNNCC 1 cut(s) 361
NspI RCATGY 1 cut(s) 551
PagI TCATGA 2 cut(s) 165, 276
PciI ACATGT 1 cut(s) 547
PctI GAATGC 2 cut(s) 72, 562
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 4 cut(s) 4, 84, 217, 439
PkrI GCNGC 2 cut(s) 460, 591
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PscI ACATGT 1 cut(s) 547
PspN4I GGNNCC 1 cut(s) 361
SaqAI TTAA 2 cut(s) 534, 778
SatI GCNGC 2 cut(s) 459, 590
Sau3AI GATC 3 cut(s) 29, 258, 637
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 347
SfaNI GCATC 2 cut(s) 385, 750
SpeI ACTAGT 1 cut(s) 418
Sse9I AATT 4 cut(s) 9, 136, 204, 775
SsiI CCGC 2 cut(s) 254, 589
SspMI CTAG 5 cut(s) 65, 77, 122, 419, 720
TaqI TCGA 1 cut(s) 245
TasI AATT 4 cut(s) 9, 136, 204, 775
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 4 cut(s) 4, 84, 217, 439
Tru1I TTAA 2 cut(s) 534, 778
Tru9I TTAA 2 cut(s) 534, 778
TscAI CASTG 4 cut(s) 411, 567, 640, 697
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 6 cut(s) 17, 117, 182, 198, 265, 293
TspRI CASTG 4 cut(s) 411, 567, 640, 697
XapI RAATTY 2 cut(s) 9, 136
XceI RCATGY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 5 cut(s) 65, 77, 122, 419, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.