pycom16g04680

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012314
Physical Location & Seq
Reverse (-)
3020182 .. 3021018
837 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04680.3

Sequence Viewer

Length: 744 bp
ATGATAACGACAGAAACAAGTGCACAAACAATGAATATTTCAACGACAATCCGAATGCTTTCCAGTAGTCACCAGTCTGTAAGGCATGCATCGTTGCTGTTCTTGCTTGAACTTTCAAGATCACAATCGTTATGCGAGAAAATTGGGTCAGAGCCGTTGTATTTCAGAGCTCTCGCACAGCTCTCATCATACCATCCAAATGGCAAATTACTACAAGAAGCTGGAATTATACAAGTCATGGTTGAAGAGATGTTCATTAAACAAACCAATGGACTCAAAAGCGAAGCAGCCGCAATCCTTGCAAGTATATTCGAGTCAGGGCATGAGCTCGAGTCCCCGCTAATTCTCATGGTCTCTATGACTTCCGACTATGTTGTGTGCAACATCATCGATATACTCAAGAACGCAACTGCCCAGGTATCAGCAATCGGGTTGGAGAATCTTTCAGCAGAGTCAATAAAACTATCAAAACCGCCACAAATCAAGAGAAAGAAGTCGTTGCACCTGCCCAAGTATCTAACTTGTGGATCACCAAGGAGGAGGAATACACCGCTGTGCCCGGTTCACAGAGGGATATGTTCTTCACAGTACACATCAGCATTGTTGATGCGAAGGCGGTTTAGAGCTGCGTTGTCGGCAATATGTACATTGTTGGATGACAAAGTTGATCATGCTGTGCATCATGTTTTGAATGTGGTGAAAGAGCACAGGAGAAGGGGCTGTGGCAGCAGTCGTTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

248

Amino Acids

27.39

Weight (kDa)

9.53

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68940 AT1G68940 AT1G68940
fragaria_vesca FvH4_4g28940
malus_domestica MD13G1055000.v1.1
prunus_persica Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1
pyrus_communis pycom16g04680
rosa_chinensis RchiOBHm_Chr4g0437081
rosa_laevigata RLG00000006470
rosa_multiflora Rmu_ssc0000006.1_g000011
rosa_roxburghii Rroxscaffold_5G00378160
rosa_rugosa Rorug04G0298000
rosa_samantha Rh4AG352700 Rh4BG362000 Rh4CG376300 Rh4DG356200
rosa_wichuraiana Rw4G030880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 513
Acc36I ACCTGC 1 cut(s) 513
AciI CCGC 5 cut(s) 291, 338, 473, 551, 616
AclWI GGATC 1 cut(s) 535
AfaI GTAC 2 cut(s) 590, 646
AgsI TTSAA 5 cut(s) 42, 110, 117, 245, 691
AjnI CCWGG 1 cut(s) 414
AleI CACNNNNGTG 1 cut(s) 553
AluBI AGCT 5 cut(s) 170, 181, 221, 328, 626
AluI AGCT 5 cut(s) 170, 181, 221, 328, 626
Alw21I GWGCWC 4 cut(s) 25, 172, 330, 708
Alw26I GTCTC 1 cut(s) 358
Alw44I GTGCAC 1 cut(s) 21
AlwI GGATC 1 cut(s) 535
Ama87I CYCGRG 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 3 cut(s) 287, 626, 726
Asp700I GAANNNNTTC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 3 cut(s) 62, 522, 709
AvaI CYCGRG 1 cut(s) 329
BaeGI GKGCMC 2 cut(s) 25, 560
BanII GRGCYC 2 cut(s) 172, 330
Bbv12I GWGCWC 4 cut(s) 25, 172, 330, 708
BbvI GCAGC 3 cut(s) 299, 613, 738
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 1 cut(s) 416
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 358
BfuAI ACCTGC 1 cut(s) 513
BisI GCNGC 4 cut(s) 288, 291, 627, 727
BlsI GCNGC 4 cut(s) 289, 292, 628, 728
Bme1390I CCNGG 2 cut(s) 416, 560
BmeT110I CYCGRG 1 cut(s) 329
BmrFI CCNGG 2 cut(s) 416, 560
BmsI GCATC 3 cut(s) 98, 597, 688
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 560
Bsa29I ATCGAT 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 414, 533
Bse1I ACTGG 2 cut(s) 63, 73
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 414, 533
BseGI GGATG 2 cut(s) 193, 661
BseJI GATNNNNATC 1 cut(s) 124
BseNI ACTGG 2 cut(s) 63, 73
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 2 cut(s) 25, 560
BseXI GCAGC 3 cut(s) 299, 613, 738
BshVI ATCGAT 1 cut(s) 390
BsiHKAI GWGCWC 4 cut(s) 25, 172, 330, 708
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 560
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 5 cut(s) 25, 172, 330, 560, 708
Bsp1407I TGTACA 1 cut(s) 644
Bsp143I GATC 3 cut(s) 119, 527, 667
BspACI CCGC 5 cut(s) 291, 338, 473, 551, 616
BspDI ATCGAT 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 513
BspPI GGATC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 358
BsrGI TGTACA 1 cut(s) 644
BsrI ACTGG 2 cut(s) 63, 73
BssECI CCNNGG 2 cut(s) 414, 533
BssMI GATC 3 cut(s) 119, 527, 667
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 588
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 87
BstF5I GGATG 2 cut(s) 193, 661
BstKTI GATC 3 cut(s) 122, 530, 670
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 3 cut(s) 119, 527, 667
BstMWI GCNNNNNNNGC 4 cut(s) 103, 299, 635, 726
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 414, 558
BstSLI GKGCMC 2 cut(s) 25, 560
BstV1I GCAGC 3 cut(s) 299, 613, 738
BstXI CCANNNNNNTGG 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 2 cut(s) 193, 661
BveI ACCTGC 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 87
ClaI ATCGAT 1 cut(s) 390
Csp6I GTAC 2 cut(s) 589, 645
CviAII CATG 6 cut(s) 86, 238, 323, 349, 671, 683
CviJI RGCY 8 cut(s) 154, 170, 181, 221, 290, 328, 626, 720
CviKI_1 RGCY 8 cut(s) 154, 170, 181, 221, 290, 328, 626, 720
CviQI GTAC 2 cut(s) 589, 645
DpnI GATC 3 cut(s) 121, 529, 669
DpnII GATC 3 cut(s) 119, 527, 667
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Ecl136II GAGCTC 2 cut(s) 170, 328
Eco130I CCWWGG 1 cut(s) 533
Eco24I GRGCYC 2 cut(s) 172, 330
Eco31I GGTCTC 1 cut(s) 358
Eco53kI GAGCTC 2 cut(s) 170, 328
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 2 cut(s) 170, 328
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 91
EcoT38I GRGCYC 2 cut(s) 172, 330
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 6 cut(s) 89, 241, 326, 352, 674, 686
FaqI GGGAC 1 cut(s) 319
FatI CATG 6 cut(s) 85, 237, 322, 348, 670, 682
FauI CCCGC 1 cut(s) 345
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 4 cut(s) 288, 291, 627, 727
FokI GGATG 2 cut(s) 180, 668
FriOI GRGCYC 2 cut(s) 172, 330
Fsp4HI GCNGC 4 cut(s) 288, 291, 627, 727
GluI GCNGC 4 cut(s) 288, 291, 627, 727
HapII CCGG 1 cut(s) 560
Hin1II CATG 6 cut(s) 89, 241, 326, 352, 674, 686
HinfI GANTC 5 cut(s) 273, 314, 332, 439, 452
HpaII CCGG 1 cut(s) 560
HphI GGTGA 3 cut(s) 62, 522, 709
Hpy166II GTNNAC 3 cut(s) 23, 565, 591
Hpy188I TCNGA 4 cut(s) 53, 151, 167, 367
Hpy188III TCNNGA 3 cut(s) 117, 400, 484
Hpy8I GTNNAC 3 cut(s) 23, 565, 591
HpyAV CCTTC 2 cut(s) 606, 708
HpyCH4III ACNGT 1 cut(s) 588
HpyCH4V TGCA 6 cut(s) 23, 89, 302, 381, 502, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 299, 635, 726
Hsp92II CATG 6 cut(s) 89, 241, 326, 352, 674, 686
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 3 cut(s) 119, 527, 667
LpnPI CCDG 9 cut(s) 76, 86, 207, 303, 401, 428, 518, 573, 694
Lsp1109I GCAGC 3 cut(s) 299, 613, 738
LweI GCATC 3 cut(s) 98, 597, 688
MaeIII GTNAC 1 cut(s) 68
MalI GATC 3 cut(s) 121, 529, 669
MboI GATC 3 cut(s) 119, 527, 667
MboII GAAGA 2 cut(s) 257, 573
MhlI GDGCHC 5 cut(s) 25, 172, 330, 560, 708
MluCI AATT 4 cut(s) 141, 206, 225, 342
MlyI GAGTC 4 cut(s) 267, 323, 341, 461
MmeI TCCRAC 3 cut(s) 390, 414, 633
MnlI CCTC 3 cut(s) 531, 534, 563
Mph1103I ATGCAT 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 2 cut(s) 198, 553
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 416, 560
Mva1269I GAATGC 1 cut(s) 60
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 103, 299, 635, 726
NciI CCSGG 1 cut(s) 560
NdeII GATC 3 cut(s) 119, 527, 667
NlaIII CATG 6 cut(s) 89, 241, 326, 352, 674, 686
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 553
PaeI GCATGC 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 329
PaqCI CACCTGC 1 cut(s) 513
PctI GAATGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 4 cut(s) 289, 292, 628, 728
PleI GAGTC 4 cut(s) 267, 322, 340, 460
PpsI GAGTC 4 cut(s) 267, 322, 340, 460
Psp124BI GAGCTC 2 cut(s) 172, 330
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspXI VCTCGAGB 1 cut(s) 329
RsaI GTAC 2 cut(s) 590, 646
RsaNI GTAC 2 cut(s) 589, 645
RseI CAYNNNNRTG 2 cut(s) 198, 553
SacI GAGCTC 2 cut(s) 172, 330
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 4 cut(s) 288, 291, 627, 727
Sau3AI GATC 3 cut(s) 119, 527, 667
SchI GAGTC 4 cut(s) 267, 323, 341, 461
ScrFI CCNGG 2 cut(s) 416, 560
SduI GDGCHC 5 cut(s) 25, 172, 330, 560, 708
SetI ASST 7 cut(s) 172, 183, 223, 330, 420, 507, 628
SfaNI GCATC 3 cut(s) 98, 597, 688
Sfr274I CTCGAG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 198, 553
SmlI CTYRAG 2 cut(s) 329, 398
SmoI CTYRAG 2 cut(s) 329, 398
SphI GCATGC 1 cut(s) 89
Sse9I AATT 4 cut(s) 141, 206, 225, 342
SsiI CCGC 5 cut(s) 291, 338, 473, 551, 616
SspI AATATT 1 cut(s) 37
SstI GAGCTC 2 cut(s) 172, 330
StyD4I CCNGG 2 cut(s) 414, 558
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 1 cut(s) 588
TaqI TCGA 3 cut(s) 312, 330, 390
TasI AATT 4 cut(s) 141, 206, 225, 342
TatI WGTACW 2 cut(s) 588, 644
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 3 cut(s) 287, 626, 726
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 47, 244
VneI GTGCAC 1 cut(s) 21
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.