FvH4_4g30041

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018028
Physical Location & Seq
Forward (+)
29877955 .. 29878539
585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30041.t1

Sequence Viewer

Length: 564 bp
ATGTGGTGTTCAAATACGTCTAACGAGAAGCTGTGTCATATAGACTGCCCAGATTGGGCAAGTCTTCACGGAGCCCTTGTTTATCTGTTGTTGGACAAGTTGTTGGAACCCATTGACCATGTTCGTTTCGCTGCAGTTTGCAAGGAGTGGCGTGCAGTTTCAAAAGATTATAATGAAGCAAAGCAGCGCTGGTGTAAAAAGAGGCTACTTCCGATGCTCTTAATCTCATCTGCTGAATCCGAAGAGAAGCTAGAACTGTTCAGCATTTCCGAAAGAAAAGTCTACTGCAATATTGAGTTGCCATCGCCTTGTAGGAAGTCTAGGAGGTGTTTTGGCCCCAACCACGACAGTGGTGGTTGGTTGATTGTGGTAGATCTAGTAGAGGGCGAGTTGCCATATTTAGATTTAACTCTCGTGAACCCTTTCAGAAAAGAAGTGCCACCCATTCACCTTCCTCGTCTTCGTCCTTGCTGTTCTCAATTCAAATATCTATCTGGACAAGGCTTGAAGGTTATAGTATCTGGTGATCCCATATTGAACCCGGACAGTTTTGTGGTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

188

Amino Acids

21.43

Weight (kDa)

7.52

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 86 - 186 4.8e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AccI GTMKAC 1 cut(s) 282
AclWI GGATC 1 cut(s) 521
AfeI AGCGCT 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 5 cut(s) 12, 162, 484, 508, 538
AleI CACNNNNGTG 1 cut(s) 348
AluBI AGCT 2 cut(s) 31, 250
AluI AGCT 2 cut(s) 31, 250
AlwI GGATC 1 cut(s) 521
Aor51HI AGCGCT 1 cut(s) 188
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 2 cut(s) 131, 184
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 440, 536
BanII GRGCYC 1 cut(s) 76
BauI CACGAG 1 cut(s) 413
BbsI GAAGAC 2 cut(s) 56, 452
BbvI GCAGC 2 cut(s) 118, 196
BccI CCATC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 542
BfaI CTAG 3 cut(s) 251, 321, 377
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 190
BglII AGATCT 1 cut(s) 373
BisI GCNGC 2 cut(s) 132, 185
BlsI GCNGC 2 cut(s) 133, 186
Bme1390I CCNGG 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 3 cut(s) 73, 108, 337
BmrFI CCNGG 1 cut(s) 542
BmsI GCATC 1 cut(s) 204
BpiI GAAGAC 2 cut(s) 56, 452
BpuMI CCSGG 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 118, 196
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 2 cut(s) 373, 526
BspANI GGCC 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 73, 108, 337
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 521
BssMI GATC 2 cut(s) 373, 526
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 258, 350, 548
Bst6I CTCTTC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 376, 529
BstMBI GATC 2 cut(s) 373, 526
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 118, 196
BstV2I GAAGAC 2 cut(s) 56, 452
BstX2I RGATCY 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 335
CviAII CATG 1 cut(s) 119
CviJI RGCY 6 cut(s) 31, 74, 205, 250, 336, 504
CviKI_1 RGCY 6 cut(s) 31, 74, 205, 250, 336, 504
DpnI GATC 2 cut(s) 375, 528
DpnII GATC 2 cut(s) 373, 526
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 76
Eco47III AGCGCT 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 76
FaeI CATG 1 cut(s) 122
FaiI YATR 7 cut(s) 39, 41, 120, 171, 397, 515, 533
FatI CATG 1 cut(s) 118
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 132, 185
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 2 cut(s) 132, 185
FspBI CTAG 3 cut(s) 251, 321, 377
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 132, 185
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 542
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 542
HphI GGTGA 2 cut(s) 440, 536
Hpy166II GTNNAC 2 cut(s) 283, 418
Hpy188I TCNGA 4 cut(s) 213, 241, 271, 428
Hpy188III TCNNGA 2 cut(s) 415, 495
Hpy8I GTNNAC 2 cut(s) 283, 418
HpyAV CCTTC 2 cut(s) 461, 502
HpyCH4III ACNGT 3 cut(s) 258, 350, 548
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 134, 141, 155, 288
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 2 cut(s) 373, 526
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 5 cut(s) 63, 175, 480, 507, 555
Lsp1109I GCAGC 2 cut(s) 118, 196
LweI GCATC 1 cut(s) 204
MaeI CTAG 3 cut(s) 251, 321, 377
MaeII ACGT 1 cut(s) 17
MalI GATC 2 cut(s) 375, 528
MboI GATC 2 cut(s) 373, 526
MboII GAAGA 3 cut(s) 56, 254, 452
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 479
MmeI TCCRAC 2 cut(s) 72, 84
MnlI CCTC 4 cut(s) 195, 318, 376, 465
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 3 cut(s) 221, 407, 562
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 542
NciI CCSGG 1 cut(s) 542
NdeII GATC 2 cut(s) 373, 526
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 3 cut(s) 73, 108, 337
OliI CACNNNNGTG 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 133, 186
PsiI TTATAA 1 cut(s) 171
PspN4I GGNNCC 3 cut(s) 73, 108, 337
PspPI GGNCC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 3 cut(s) 221, 407, 562
SatI GCNGC 2 cut(s) 132, 185
Sau3AI GATC 2 cut(s) 373, 526
Sau96I GGNCC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 76
SetI ASST 6 cut(s) 20, 33, 252, 329, 453, 513
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 1 cut(s) 479
SspI AATATT 1 cut(s) 292
SspMI CTAG 3 cut(s) 251, 321, 377
StyD4I CCNGG 1 cut(s) 540
TaaI ACNGT 3 cut(s) 258, 350, 548
TaiI ACGT 1 cut(s) 20
TasI AATT 1 cut(s) 479
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 221, 407, 562
Tru9I TTAA 3 cut(s) 221, 407, 562
TscAI CASTG 1 cut(s) 355
TseI GCWGC 2 cut(s) 131, 184
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 3 cut(s) 251, 321, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.