Rmu_sc0025676.1_g000002

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025676.1
OG0018028
Physical Location & Seq
Forward (+)
1838 .. 2560
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025676.1_g000002.1.cds

Sequence Viewer

Length: 723 bp
atgtgttcaaagacgtctaacgagaagctctgtcgtatagactgcccagattgggcaagtcttcacagagcccccgtctatttgtttctggacaagtttttggaacccattgatcttgttcgttttgctgcagtttgcaaggagtggcgtgcagtttcagaagattataatgaagcaaagcagcggtggtgtaaaagtaagctacttccgatactcttgatcccatgtacttccgaagaaaagctagaactgtacagcaatgctgaaagagaagtctacagcaatattgagttaccattgccttgtagtaattcttggaggtgttttggcgccaaccacgacagtggtggttggttgaccatagtagatctagtagagcgtgagttgccatatttagatataactctcacgaaccctttcagaaaagaagtggcacccattaaccttcctcgtttgcaattcaaatatttatctcaagaaggacgtcggcagctcccgaaggttatattatccggtgatcccacattgaacccggacagttttgtggttttaacaatcaatagtcaattgcaaaatggacaccaggtgtcttccattaagggactaaatagtgattgggttcattgggactttgcttataacgttactgatgccatagtttatagaagccaggtctacttggttagtgttgatagatggctcgctttgttggatgttgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

240

Amino Acids

27.69

Weight (kDa)

5.47

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 168, 639
AatII GACGTC 2 cut(s) 17, 487
AccB1I GGYRCC 2 cut(s) 329, 433
AccI GTMKAC 2 cut(s) 276, 675
AciI CCGC 1 cut(s) 184
AclI AACGTT 1 cut(s) 642
AclWI GGATC 2 cut(s) 214, 512
AcyI GRCGYC 3 cut(s) 14, 330, 484
AdeI CACNNNGTG 1 cut(s) 586
AfaI GTAC 2 cut(s) 229, 254
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 3 cut(s) 9, 463, 529
AjnI CCWGG 2 cut(s) 582, 669
AleI CACNNNNGTG 1 cut(s) 342
AluBI AGCT 4 cut(s) 28, 202, 244, 493
AluI AGCT 4 cut(s) 28, 202, 244, 493
AlwI GGATC 2 cut(s) 214, 512
ApeKI GCWGC 3 cut(s) 128, 181, 490
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 332
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 1 cut(s) 527
BanI GGYRCC 2 cut(s) 329, 433
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 2 cut(s) 53, 582
BbvI GCAGC 3 cut(s) 115, 193, 502
BccI CCATC 1 cut(s) 690
BciT130I CCWGG 2 cut(s) 584, 671
BcnI CCSGG 1 cut(s) 533
BfaI CTAG 3 cut(s) 245, 371, 721
BfmI CTRYAG 2 cut(s) 129, 277
BfoI RGCGCY 1 cut(s) 333
BglII AGATCT 1 cut(s) 367
BisI GCNGC 3 cut(s) 129, 182, 491
BlsI GCNGC 3 cut(s) 130, 183, 492
Bme1390I CCNGG 3 cut(s) 533, 584, 671
BmiI GGNNCC 3 cut(s) 105, 331, 435
BmrFI CCNGG 3 cut(s) 533, 584, 671
BmsI GCATC 1 cut(s) 640
BpiI GAAGAC 2 cut(s) 53, 582
BpuEI CTTGAG 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 533
BsaHI GRCGYC 3 cut(s) 14, 330, 484
BsaWI WCCGGW 1 cut(s) 512
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse3DI GCAATG 2 cut(s) 265, 296
BseBI CCWGG 2 cut(s) 584, 671
BseGI GGATG 1 cut(s) 718
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 2 cut(s) 265, 296
BseXI GCAGC 3 cut(s) 115, 193, 502
BsgI GTGCAG 1 cut(s) 171
BshNI GGYRCC 2 cut(s) 329, 433
BsiSI CCGG 2 cut(s) 513, 533
BslFI GGGAC 2 cut(s) 615, 641
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 615, 641
Bsp1286I GDGCHC 1 cut(s) 73
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 4 cut(s) 112, 219, 367, 517
BspACI CCGC 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 105, 331, 435
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 2 cut(s) 214, 512
BspT107I GGYRCC 2 cut(s) 329, 433
BsrDI GCAATG 2 cut(s) 265, 296
BsrGI TGTACA 1 cut(s) 252
BssMI GATC 4 cut(s) 112, 219, 367, 517
BssNI GRCGYC 3 cut(s) 14, 330, 484
Bst2UI CCWGG 2 cut(s) 584, 671
Bst4CI ACNGT 3 cut(s) 252, 344, 539
BstACI GRCGYC 3 cut(s) 14, 330, 484
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 150, 702
BstF5I GGATG 1 cut(s) 718
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 4 cut(s) 115, 222, 370, 520
BstMBI GATC 4 cut(s) 112, 219, 367, 517
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 2 cut(s) 584, 671
BstSCI CCNGG 3 cut(s) 531, 582, 669
BstSFI CTRYAG 2 cut(s) 129, 277
BstV1I GCAGC 3 cut(s) 115, 193, 502
BstV2I GAAGAC 2 cut(s) 53, 582
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 1 cut(s) 367
BtsCI GGATG 1 cut(s) 718
BtsIMutI CAGTG 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 150, 702
CfoI GCGC 1 cut(s) 332
CsiI ACCWGGT 1 cut(s) 582
Csp6I GTAC 2 cut(s) 228, 253
CviAII CATG 1 cut(s) 225
CviJI RGCY 7 cut(s) 28, 71, 202, 244, 493, 669, 700
CviKI_1 RGCY 7 cut(s) 28, 71, 202, 244, 493, 669, 700
CviQI GTAC 2 cut(s) 228, 253
DinI GGCGCC 1 cut(s) 331
DpnI GATC 4 cut(s) 114, 221, 369, 519
DpnII GATC 4 cut(s) 112, 219, 367, 517
DraIII CACNNNGTG 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 582, 669
EcoT38I GRGCYC 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
FaeI CATG 1 cut(s) 228
FaqI GGGAC 2 cut(s) 615, 641
FatI CATG 1 cut(s) 224
FblI GTMKAC 2 cut(s) 276, 675
Fnu4HI GCNGC 3 cut(s) 129, 182, 491
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 129, 182, 491
FspBI CTAG 3 cut(s) 245, 371, 721
GlaI GCGC 1 cut(s) 331
GluI GCNGC 3 cut(s) 129, 182, 491
HaeII RGCGCY 1 cut(s) 333
HapII CCGG 2 cut(s) 513, 533
HhaI GCGC 1 cut(s) 332
Hin1I GRCGYC 3 cut(s) 14, 330, 484
Hin1II CATG 1 cut(s) 228
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HincII GTYRAC 2 cut(s) 357, 718
HindII GTYRAC 2 cut(s) 357, 718
HpaII CCGG 2 cut(s) 513, 533
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 4 cut(s) 277, 357, 676, 718
Hpy188I TCNGA 4 cut(s) 160, 210, 235, 422
Hpy188III TCNNGA 5 cut(s) 89, 217, 409, 476, 496
Hpy8I GTNNAC 4 cut(s) 277, 357, 676, 718
Hpy99I CGWCG 1 cut(s) 489
HpyAV CCTTC 3 cut(s) 455, 473, 493
HpyCH4III ACNGT 3 cut(s) 252, 344, 539
HpyCH4IV ACGT 3 cut(s) 14, 484, 642
HpyCH4V TGCA 5 cut(s) 131, 138, 152, 457, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpySE526I ACGT 3 cut(s) 14, 484, 642
Hsp92I GRCGYC 3 cut(s) 14, 330, 484
Hsp92II CATG 1 cut(s) 228
HspAI GCGC 1 cut(s) 330
KasI GGCGCC 1 cut(s) 329
Kzo9I GATC 4 cut(s) 112, 219, 367, 517
LmnI GCTCC 1 cut(s) 498
LpnPI CCDG 8 cut(s) 60, 74, 526, 546, 569, 596, 656, 683
Lsp1109I GCAGC 3 cut(s) 115, 193, 502
LweI GCATC 1 cut(s) 640
MabI ACCWGGT 1 cut(s) 582
MaeI CTAG 3 cut(s) 245, 371, 721
MaeII ACGT 3 cut(s) 14, 484, 642
MaeIII GTNAC 2 cut(s) 291, 643
MalI GATC 4 cut(s) 114, 221, 369, 519
MboI GATC 4 cut(s) 112, 219, 367, 517
MboII GAAGA 4 cut(s) 53, 173, 248, 582
MfeI CAATTG 1 cut(s) 566
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 3 cut(s) 310, 458, 566
Mly113I GGCGCC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 690
MnlI CCTC 2 cut(s) 312, 459
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 3 cut(s) 441, 551, 597
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 2 cut(s) 513, 533
MspR9I CCNGG 3 cut(s) 533, 584, 671
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 2 cut(s) 584, 671
MwoI GCNNNNNNNGC 1 cut(s) 385
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 1 cut(s) 533
NdeII GATC 4 cut(s) 112, 219, 367, 517
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 3 cut(s) 105, 331, 435
OliI CACNNNNGTG 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 130, 183, 492
PluTI GGCGCC 1 cut(s) 333
PsiI TTATAA 2 cut(s) 168, 639
Psp1406I AACGTT 1 cut(s) 642
Psp6I CCWGG 2 cut(s) 582, 669
PspGI CCWGG 2 cut(s) 582, 669
PspN4I GGNNCC 3 cut(s) 105, 331, 435
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 229, 254
RsaNI GTAC 2 cut(s) 228, 253
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 3 cut(s) 441, 551, 597
SatI GCNGC 3 cut(s) 129, 182, 491
Sau3AI GATC 4 cut(s) 112, 219, 367, 517
ScrFI CCNGG 3 cut(s) 533, 584, 671
SduI GDGCHC 1 cut(s) 73
SexAI ACCWGGT 1 cut(s) 582
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 2 cut(s) 129, 277
SfoI GGCGCC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 3 cut(s) 310, 458, 566
SsiI CCGC 1 cut(s) 184
SspDI GGCGCC 1 cut(s) 329
SspI AATATT 2 cut(s) 286, 467
SspMI CTAG 3 cut(s) 245, 371, 721
StyD4I CCNGG 3 cut(s) 531, 582, 669
TaaI ACNGT 3 cut(s) 252, 344, 539
TaiI ACGT 3 cut(s) 17, 487, 645
TasI AATT 3 cut(s) 310, 458, 566
TatI WGTACW 2 cut(s) 227, 252
Tru1I TTAA 3 cut(s) 441, 551, 597
Tru9I TTAA 3 cut(s) 441, 551, 597
TscAI CASTG 1 cut(s) 349
TseI GCWGC 3 cut(s) 128, 181, 490
TspDTI ATGAA 2 cut(s) 186, 611
TspRI CASTG 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 2 cut(s) 276, 675
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 3 cut(s) 245, 371, 721
ZraI GACGTC 2 cut(s) 15, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.