RLG00000006369

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018028
Physical Location & Seq
Forward (+)
6541640 .. 6542347
708 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006369

Sequence Viewer

Length: 708 bp
ATGTTCTCTGCTTTCAGTGCTTTGTGGTTTTGGTTTCTTTGGTTCTTAACTCCATTATGTTTTCAAAGACGTCTAACGAAGCTCCGTCTTATAGACTGCCGAGATTGGGCAAGTCTTCATGGAGCCCCTGTCTATTTGTTTCTGGACAAGTTGTTGGAACCCATTGATCTTGTTCGTTTTGCTGCAGTTTGCAAGGAGTGGCGTGCAGTTTCAAAAGATTATAATGAAGCAAAGCAGCGGTGGTGTAAAAGTAAGCTACTTCCGATGCTCGTAATTCCATGTACTTCCGAAAAAGAGCTAGAACTGTACAGCATTGCCGAAAGAGAAGTCTACACCAATATTGAGTTACCATTGCCTTATAGTAGTAATTCTAGGAGGTGTTTTGGCTCCAACCACGACAGTGGTGGTTGGTTGACCATGGTAGATCTAGTAGAGCGTGAGTTGCCATCTTTAGATATAACTCTCACGAACCCTTTCAGAAAAGAAGTGGCACCCATTCACCTTCCTCGTTTGCAATTCAAATATTTATCTCAAAAAGGACGTCGGCAGCTCCCGAAGGTTATATTATCCGGTGATCCCACATTGAATCCGGACAGTTTTGTGGTTTTAGCAATCAATAGTCAATTTCAAAATGGACACCAGGTGTCTTCCATTAAGGGACTAAATAGTGATTTGGTTCATTGGGACTTTGCATATAAACGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

236

Amino Acids

27.43

Weight (kDa)

9.0

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 102 - 209 4.1e-11 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AatII GACGTC 2 cut(s) 73, 544
AccB1I GGYRCC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 1 cut(s) 238
AclI AACGTT 1 cut(s) 700
AclWI GGATC 1 cut(s) 569
AcyI GRCGYC 2 cut(s) 70, 541
AdeI CACNNNGTG 1 cut(s) 643
AfaI GTAC 2 cut(s) 283, 308
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 5 cut(s) 65, 213, 520, 586, 629
AjnI CCWGG 1 cut(s) 639
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 4 cut(s) 82, 256, 298, 550
AluI AGCT 4 cut(s) 82, 256, 298, 550
AlwI GGATC 1 cut(s) 569
Aor13HI TCCGGA 1 cut(s) 589
ApeKI GCWGC 3 cut(s) 182, 235, 547
ArsI GACNNNNNNTTYG 4 cut(s) 312, 344, 526, 558
Asp700I GAANNNNTTC 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 491, 584
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 2 cut(s) 107, 639
BbvI GCAGC 3 cut(s) 169, 247, 559
BccI CCATC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 641
BfaI CTAG 3 cut(s) 299, 372, 428
BfmI CTRYAG 1 cut(s) 183
BglII AGATCT 1 cut(s) 424
BisI GCNGC 3 cut(s) 183, 236, 548
BlsI GCNGC 3 cut(s) 184, 237, 549
Bme1390I CCNGG 1 cut(s) 641
BmiI GGNNCC 4 cut(s) 124, 159, 388, 492
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 2 cut(s) 107, 639
BsaHI GRCGYC 2 cut(s) 70, 541
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 2 cut(s) 569, 589
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse3DI GCAATG 2 cut(s) 312, 350
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 2 cut(s) 312, 350
BseXI GCAGC 3 cut(s) 169, 247, 559
BsgI GTGCAG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 490
BsiSI CCGG 2 cut(s) 570, 590
BslFI GGGAC 2 cut(s) 672, 698
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 672, 698
Bsp1286I GDGCHC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 589
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 3 cut(s) 166, 424, 574
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 1 cut(s) 238
BspEI TCCGGA 1 cut(s) 589
BspLI GGNNCC 4 cut(s) 124, 159, 388, 492
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 569
BspT107I GGYRCC 1 cut(s) 490
BsrDI GCAATG 2 cut(s) 312, 350
BsrGI TGTACA 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 3 cut(s) 166, 424, 574
BssNI GRCGYC 2 cut(s) 70, 541
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 3 cut(s) 306, 401, 596
BstACI GRCGYC 2 cut(s) 70, 541
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 417
BstKTI GATC 3 cut(s) 169, 427, 577
BstMBI GATC 3 cut(s) 166, 424, 574
BstMWI GCNNNNNNNGC 2 cut(s) 17, 442
BstNI CCWGG 1 cut(s) 641
BstSCI CCNGG 1 cut(s) 639
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 3 cut(s) 169, 247, 559
BstV2I GAAGAC 2 cut(s) 107, 639
BstX2I RGATCY 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 1 cut(s) 424
BtgI CCRYGG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 22, 406
Cac8I GCNNGC 1 cut(s) 204
CsiI ACCWGGT 1 cut(s) 639
Csp6I GTAC 2 cut(s) 282, 307
CviAII CATG 3 cut(s) 119, 279, 418
CviJI RGCY 6 cut(s) 82, 125, 256, 298, 387, 550
CviKI_1 RGCY 6 cut(s) 82, 125, 256, 298, 387, 550
CviQI GTAC 2 cut(s) 282, 307
DpnI GATC 3 cut(s) 168, 426, 576
DpnII GATC 3 cut(s) 166, 424, 574
DraIII CACNNNGTG 1 cut(s) 643
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 3 cut(s) 122, 282, 421
FaqI GGGAC 2 cut(s) 672, 698
FatI CATG 3 cut(s) 118, 278, 417
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 3 cut(s) 183, 236, 548
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 3 cut(s) 183, 236, 548
FspBI CTAG 3 cut(s) 299, 372, 428
GluI GCNGC 3 cut(s) 183, 236, 548
HapII CCGG 2 cut(s) 570, 590
Hin1I GRCGYC 2 cut(s) 70, 541
Hin1II CATG 3 cut(s) 122, 282, 421
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 1 cut(s) 586
HpaII CCGG 2 cut(s) 570, 590
HphI GGTGA 2 cut(s) 491, 584
Hpy166II GTNNAC 2 cut(s) 331, 414
Hpy188I TCNGA 3 cut(s) 264, 289, 479
Hpy188III TCNNGA 4 cut(s) 143, 466, 553, 590
Hpy8I GTNNAC 2 cut(s) 331, 414
Hpy99I CGWCG 1 cut(s) 546
HpyAV CCTTC 2 cut(s) 512, 550
HpyCH4III ACNGT 3 cut(s) 306, 401, 596
HpyCH4IV ACGT 3 cut(s) 70, 541, 700
HpyCH4V TGCA 5 cut(s) 185, 192, 206, 514, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 442
HpySE526I ACGT 3 cut(s) 70, 541, 700
Hsp92I GRCGYC 2 cut(s) 70, 541
Hsp92II CATG 3 cut(s) 122, 282, 421
Kpn2I TCCGGA 1 cut(s) 589
Kzo9I GATC 3 cut(s) 166, 424, 574
LmnI GCTCC 4 cut(s) 87, 122, 392, 555
LpnPI CCDG 6 cut(s) 128, 141, 583, 603, 626, 653
Lsp1109I GCAGC 3 cut(s) 169, 247, 559
LweI GCATC 1 cut(s) 255
MabI ACCWGGT 1 cut(s) 639
MaeI CTAG 3 cut(s) 299, 372, 428
MaeII ACGT 3 cut(s) 70, 541, 700
MaeIII GTNAC 2 cut(s) 345, 701
MalI GATC 3 cut(s) 168, 426, 576
MboI GATC 3 cut(s) 166, 424, 574
MboII GAAGA 2 cut(s) 107, 639
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 4 cut(s) 273, 367, 515, 623
MmeI TCCRAC 2 cut(s) 135, 414
MnlI CCTC 2 cut(s) 369, 516
MroI TCCGGA 1 cut(s) 589
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 2 cut(s) 47, 654
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 2 cut(s) 570, 590
MspR9I CCNGG 1 cut(s) 641
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 2 cut(s) 17, 442
NcoI CCATGG 1 cut(s) 417
NdeII GATC 3 cut(s) 166, 424, 574
NlaIII CATG 3 cut(s) 122, 282, 421
NlaIV GGNNCC 4 cut(s) 124, 159, 388, 492
NmeAIII GCCGAG 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 3 cut(s) 184, 237, 549
PsiI TTATAA 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 4 cut(s) 124, 159, 388, 492
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 2 cut(s) 283, 308
RsaNI GTAC 2 cut(s) 282, 307
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 2 cut(s) 47, 654
SatI GCNGC 3 cut(s) 183, 236, 548
Sau3AI GATC 3 cut(s) 166, 424, 574
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 1 cut(s) 127
SexAI ACCWGGT 1 cut(s) 639
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 4 cut(s) 273, 367, 515, 623
SsiI CCGC 1 cut(s) 238
SspI AATATT 2 cut(s) 340, 524
SspMI CTAG 3 cut(s) 299, 372, 428
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 306, 401, 596
TaiI ACGT 3 cut(s) 73, 544, 703
TasI AATT 4 cut(s) 273, 367, 515, 623
TatI WGTACW 2 cut(s) 281, 306
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 2 cut(s) 47, 654
Tru9I TTAA 2 cut(s) 47, 654
TscAI CASTG 2 cut(s) 22, 406
TseI GCWGC 3 cut(s) 182, 235, 547
TspDTI ATGAA 3 cut(s) 107, 240, 668
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 2 cut(s) 22, 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 3 cut(s) 299, 372, 428
ZraI GACGTC 2 cut(s) 71, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.