FvH4_4g30110

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018028
Physical Location & Seq
Forward (+)
29917389 .. 29918886
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30110.t1

Sequence Viewer

Length: 1299 bp
ATGTGTTCAAATATGTCTAACAAGAAGCTCTGTCATATAGACTGCCCAGATTGGGCAAGTCTTCACGGAGCCCTTGTTTATCTGTTGCTGGACAAGTTGTTGGAACCCATTGACCATGTTCGCTTTGCAGCAGTTTGCAAAGAGTGGGGTGCAGTTTCAGAAGATTATAATGAAGCAAAGCACCGTTGGTGTAAAAAGAGGTTACTTCCGATGCTCTTGATCTCATCTGCTGAATCCGAAGAAAAGCTAGAACTGTACAGCATTGCCGAAAGAAAAGTCTACAGCAACATTGAGTTAGCATTGCCTTATAGGAAGTCTATGAGGTGTTTTGGCTCCAACCACGACAGTGGTGGTTGGTTGATTGTGGTAGATATAGTTGAGGCTGAGTCGCCATATTTAGATATAACTCTCGTGAACCCTTTCAGAAAAGAAGTGCCACCCATTCATCTTCCTCGTCTTGTTCCTGGTTCTCCATTCAACTATCTATCTGAACAAGGCCTGAAGGTCATATTATCTGGTGATCCCACATTGAACCCTGACAGTTTTGTGGTTTTAGCAATCATTCCATACACTGACAACGTGTCTTACATAAAGGGACTAAACAGTGTTTGGGTTTTTTGGGGATATGGATTTGGCAGTACCGATGCTATAGTTAATAAGAGCAAGATTTACTCGGTTTCTCGGGGACATGGATTTGGGAGAAGGATTCTTTTTTTGGATGTTGATCAGGCTAAAACAAACATGTTCTATCTTCCTGAACCACTATTTCGTTCACCAGGTAAGCTCTATCTTGTAGAATCAGCACAGGGAGACCTGTTGCTTGTTCAAAGAGTTATGGAACCGAAGAAGAATGTGAACGGTTTGCATCACAATAAAGAACTTTGGACCAGCAGCTTCGTTATTCACAAGGCGACGTTCATCAAGAGAGACGAAAAGGTAGACGGACCATGTAGTCCACTACGCTTACGAGGGTGTTCGTTAATTCTAGGTGATGGAGATCGTTCAGCGGCGGTTCAGCTAAACCAGGTAGAGAGCATTGGAGATGAGGTTTTGTTTGTAGGCAACAACTATTCGTTCTCGGTTTTGGCTTCGGACTATCCTGGGACGTGTCAACCCAATTCCATATACTACACAGATGATTCCATGGAAATTGAACTCGATGGAGACGCGCCATATGACATGGGGATCTTCAACCTAGCGGATAAAAGCATCACACCACTTTGTTCTTCTCTAAATCATTCCAAGAGGATTATCCAGCCACCGTTTTGGACAATCCCACCATTTAGTGGACTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

433

Amino Acids

48.59

Weight (kDa)

5.91

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 85 - 398 1.1e-34 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AasI GACNNNNNNGTC 1 cut(s) 951
AccB7I CCANNNNNTGG 1 cut(s) 1286
AccI GTMKAC 2 cut(s) 279, 939
AccII CGCG 1 cut(s) 1169
AciI CCGC 3 cut(s) 1007, 1010, 1199
AclWI GGATC 2 cut(s) 515, 1193
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 2 cut(s) 257, 640
AfiI CCNNNNNNNGG 2 cut(s) 52, 1286
AflIII ACRYGT 3 cut(s) 579, 741, 1106
AgsI TTSAA 6 cut(s) 9, 478, 532, 827, 1154, 1192
AhdI GACNNNNNGTC 1 cut(s) 580
AjiI CACGTC 1 cut(s) 1107
AjnI CCWGG 4 cut(s) 463, 775, 1023, 1099
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 5 cut(s) 28, 247, 784, 894, 1018
AluI AGCT 5 cut(s) 28, 247, 784, 894, 1018
Alw26I GTCTC 3 cut(s) 804, 921, 1158
AlwI GGATC 2 cut(s) 515, 1193
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 1 cut(s) 496
ApeKI GCWGC 2 cut(s) 128, 891
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
Asp700I GAANNNNTTC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 1171
AspS9I GGNCC 2 cut(s) 885, 944
AsuHPI GGTGA 3 cut(s) 530, 765, 1001
AvaI CYCGRG 1 cut(s) 681
AvaII GGWCC 2 cut(s) 885, 944
BanII GRGCYC 1 cut(s) 73
BauI CACGAG 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 140, 903
BccI CCATC 2 cut(s) 986, 1154
BciT130I CCWGG 4 cut(s) 465, 777, 1025, 1101
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 3 cut(s) 804, 921, 1158
BfaI CTAG 3 cut(s) 248, 986, 1196
BfmI CTRYAG 2 cut(s) 280, 648
BisI GCNGC 3 cut(s) 129, 892, 1008
BlsI GCNGC 3 cut(s) 130, 893, 1009
Bme1390I CCNGG 4 cut(s) 465, 777, 1025, 1101
Bme18I GGWCC 2 cut(s) 885, 944
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 681
BmgBI CACGTC 1 cut(s) 1107
BmgT120I GGNCC 2 cut(s) 885, 944
BmiI GGNNCC 4 cut(s) 70, 105, 334, 840
BmrFI CCNGG 4 cut(s) 465, 777, 1025, 1101
BmsI GCATC 4 cut(s) 201, 634, 874, 1218
BpiI GAAGAC 1 cut(s) 53
BsaBI GATNNNNATC 2 cut(s) 723, 996
BsaI GGTCTC 1 cut(s) 804
BsaJI CCNNGG 2 cut(s) 1100, 1143
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 1032, 1062
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 1286
Bse3DI GCAATG 2 cut(s) 261, 299
Bse8I GATNNNNATC 2 cut(s) 723, 996
BseBI CCWGG 4 cut(s) 465, 777, 1025, 1101
BseDI CCNNGG 2 cut(s) 1100, 1143
BseGI GGATG 1 cut(s) 724
BseJI GATNNNNATC 2 cut(s) 723, 996
BseLI CCNNNNNNNGG 2 cut(s) 52, 1286
BseMI GCAATG 2 cut(s) 261, 299
BseMII CTCAG 1 cut(s) 375
BseXI GCAGC 2 cut(s) 140, 903
BsgI GTGCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 1169
BshFI GGCC 1 cut(s) 498
BsiHKCI CYCGRG 1 cut(s) 681
BslFI GGGAC 3 cut(s) 609, 699, 1117
BslI CCNNNNNNNGG 2 cut(s) 52, 1286
BsmAI GTCTC 3 cut(s) 804, 921, 1158
BsmBI CGTCTC 2 cut(s) 921, 1158
BsmFI GGGAC 3 cut(s) 609, 699, 1117
BsnI GGCC 1 cut(s) 498
Bso31I GGTCTC 1 cut(s) 804
BsoBI CYCGRG 1 cut(s) 681
Bsp1286I GDGCHC 1 cut(s) 73
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 5 cut(s) 219, 520, 724, 997, 1185
Bsp19I CCATGG 1 cut(s) 1143
BspACI CCGC 3 cut(s) 1007, 1010, 1199
BspANI GGCC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 376
BspFNI CGCG 1 cut(s) 1169
BspLI GGNNCC 4 cut(s) 70, 105, 334, 840
BspPI GGATC 2 cut(s) 515, 1193
BspTNI GGTCTC 1 cut(s) 804
BsrDI GCAATG 2 cut(s) 261, 299
BsrGI TGTACA 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 1100, 1143
BssMI GATC 5 cut(s) 219, 520, 724, 997, 1185
BssSI CACGAG 1 cut(s) 410
BssT1I CCWWGG 1 cut(s) 1143
Bst2BI CACGAG 1 cut(s) 410
Bst2UI CCWGG 4 cut(s) 465, 777, 1025, 1101
Bst4CI ACNGT 7 cut(s) 185, 255, 347, 542, 605, 860, 1263
BstAUI TGTACA 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 1143
BstF5I GGATG 1 cut(s) 724
BstFNI CGCG 1 cut(s) 1169
BstHHI GCGC 1 cut(s) 1171
BstKTI GATC 5 cut(s) 222, 523, 727, 1000, 1188
BstMAI GTCTC 3 cut(s) 804, 921, 1158
BstMBI GATC 5 cut(s) 219, 520, 724, 997, 1185
BstNI CCWGG 4 cut(s) 465, 777, 1025, 1101
BstNSI RCATGY 1 cut(s) 745
BstSCI CCNGG 4 cut(s) 463, 775, 1023, 1099
BstSFI CTRYAG 2 cut(s) 280, 648
BstUI CGCG 1 cut(s) 1169
BstV1I GCAGC 2 cut(s) 140, 903
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 1185
BstXI CCANNNNNNTGG 2 cut(s) 347, 1266
BstYI RGATCY 1 cut(s) 1185
BsuRI GGCC 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 1143
BtrI CACGTC 1 cut(s) 1107
BtsCI GGATG 1 cut(s) 724
BtsIMutI CAGTG 3 cut(s) 352, 570, 610
CfoI GCGC 1 cut(s) 1171
Cfr13I GGNCC 2 cut(s) 885, 944
CseI GACGC 1 cut(s) 1175
CsiI ACCWGGT 2 cut(s) 775, 1023
Csp6I GTAC 2 cut(s) 256, 639
CviAII CATG 6 cut(s) 116, 689, 742, 948, 1144, 1180
CviQI GTAC 2 cut(s) 256, 639
DdeI CTNAG 1 cut(s) 384
DpnI GATC 5 cut(s) 221, 522, 726, 999, 1187
DpnII GATC 5 cut(s) 219, 520, 724, 997, 1185
DrdI GACNNNNNNGTC 1 cut(s) 951
DriI GACNNNNNGTC 1 cut(s) 580
DseDI GACNNNNNNGTC 1 cut(s) 951
Eam1105I GACNNNNNGTC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 1143
Eco147I AGGCCT 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 804
Eco47I GGWCC 2 cut(s) 885, 944
Eco57I CTGAAG 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 681
EcoRII CCWGG 4 cut(s) 463, 775, 1023, 1099
EcoT14I CCWWGG 1 cut(s) 1143
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 1143
Esp3I CGTCTC 2 cut(s) 921, 1158
FaeI CATG 6 cut(s) 119, 692, 745, 951, 1147, 1183
FaqI GGGAC 3 cut(s) 609, 699, 1117
FatI CATG 6 cut(s) 115, 688, 741, 947, 1143, 1179
FauNDI CATATG 1 cut(s) 1174
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 2 cut(s) 279, 939
Fnu4HI GCNGC 3 cut(s) 129, 892, 1008
FokI GGATG 1 cut(s) 731
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 129, 892, 1008
FspBI CTAG 3 cut(s) 248, 986, 1196
GlaI GCGC 1 cut(s) 1170
GluI GCNGC 3 cut(s) 129, 892, 1008
HaeIII GGCC 1 cut(s) 498
HgaI GACGC 1 cut(s) 1175
HhaI GCGC 1 cut(s) 1171
Hin1II CATG 6 cut(s) 119, 692, 745, 951, 1147, 1183
Hin6I GCGC 1 cut(s) 1169
HinP1I GCGC 1 cut(s) 1169
HincII GTYRAC 1 cut(s) 1112
HindII GTYRAC 1 cut(s) 1112
HinfI GANTC 6 cut(s) 233, 386, 706, 797, 1139, 1290
HphI GGTGA 3 cut(s) 530, 765, 1001
Hpy166II GTNNAC 8 cut(s) 280, 415, 773, 856, 940, 956, 1112, 1289
Hpy188I TCNGA 6 cut(s) 160, 210, 238, 425, 490, 1093
Hpy188III TCNNGA 4 cut(s) 217, 412, 755, 922
Hpy8I GTNNAC 8 cut(s) 280, 415, 773, 856, 940, 956, 1112, 1289
Hpy99I CGWCG 1 cut(s) 916
HpyAV CCTTC 2 cut(s) 496, 696
HpyCH4III ACNGT 7 cut(s) 185, 255, 347, 542, 605, 860, 1263
HpyCH4IV ACGT 3 cut(s) 579, 914, 1106
HpyCH4V TGCA 4 cut(s) 128, 138, 152, 865
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 3 cut(s) 579, 914, 1106
Hsp92II CATG 6 cut(s) 119, 692, 745, 951, 1147, 1183
HspAI GCGC 1 cut(s) 1169
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 5 cut(s) 219, 520, 724, 997, 1185
LmnI GCTCC 2 cut(s) 68, 338
Lsp1109I GCAGC 2 cut(s) 140, 903
LweI GCATC 4 cut(s) 201, 634, 874, 1218
MabI ACCWGGT 2 cut(s) 775, 1023
MaeI CTAG 3 cut(s) 248, 986, 1196
MaeII ACGT 3 cut(s) 579, 914, 1106
MaeIII GTNAC 1 cut(s) 201
MalI GATC 5 cut(s) 221, 522, 726, 999, 1187
MboI GATC 5 cut(s) 219, 520, 724, 997, 1185
MboII GAAGA 9 cut(s) 53, 173, 251, 440, 743, 856, 859, 1180, 1218
MflI RGATCY 1 cut(s) 1185
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 3 cut(s) 981, 1117, 1149
MlyI GAGTC 2 cut(s) 395, 1284
MmeI TCCRAC 2 cut(s) 81, 360
MnlI CCTC 7 cut(s) 192, 315, 373, 462, 962, 1039, 1239
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 2 cut(s) 654, 980
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 1007
MspR9I CCNGG 4 cut(s) 465, 777, 1025, 1101
MvaI CCWGG 4 cut(s) 465, 777, 1025, 1101
MvnI CGCG 1 cut(s) 1169
NcoI CCATGG 1 cut(s) 1143
NdeI CATATG 1 cut(s) 1174
NdeII GATC 5 cut(s) 219, 520, 724, 997, 1185
NlaIII CATG 6 cut(s) 119, 692, 745, 951, 1147, 1183
NlaIV GGNNCC 4 cut(s) 70, 105, 334, 840
NspI RCATGY 1 cut(s) 745
OliI CACNNNNGTG 1 cut(s) 345
PceI AGGCCT 1 cut(s) 498
PciI ACATGT 1 cut(s) 741
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 4 cut(s) 233, 706, 797, 1139
PflMI CCANNNNNTGG 1 cut(s) 1286
PkrI GCNGC 3 cut(s) 130, 893, 1009
PleI GAGTC 2 cut(s) 394, 1284
PpsI GAGTC 2 cut(s) 394, 1284
PscI ACATGT 1 cut(s) 741
PsiI TTATAA 1 cut(s) 168
Psp6I CCWGG 4 cut(s) 463, 775, 1023, 1099
PspGI CCWGG 4 cut(s) 463, 775, 1023, 1099
PspN4I GGNNCC 4 cut(s) 70, 105, 334, 840
PspPI GGNCC 2 cut(s) 885, 944
PsuI RGATCY 1 cut(s) 1185
RsaI GTAC 2 cut(s) 257, 640
RsaNI GTAC 2 cut(s) 256, 639
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 654, 980
SatI GCNGC 3 cut(s) 129, 892, 1008
Sau3AI GATC 5 cut(s) 219, 520, 724, 997, 1185
Sau96I GGNCC 2 cut(s) 885, 944
SchI GAGTC 2 cut(s) 395, 1284
ScrFI CCNGG 4 cut(s) 465, 777, 1025, 1101
SduI GDGCHC 1 cut(s) 73
SexAI ACCWGGT 2 cut(s) 775, 1023
SfaNI GCATC 4 cut(s) 201, 634, 874, 1218
SfcI CTRYAG 2 cut(s) 280, 648
SinI GGWCC 2 cut(s) 885, 944
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 3 cut(s) 981, 1117, 1149
SseBI AGGCCT 1 cut(s) 498
SsiI CCGC 3 cut(s) 1007, 1010, 1199
SspMI CTAG 3 cut(s) 248, 986, 1196
StuI AGGCCT 1 cut(s) 498
StyD4I CCNGG 4 cut(s) 463, 775, 1023, 1099
StyI CCWWGG 1 cut(s) 1143
TaaI ACNGT 7 cut(s) 185, 255, 347, 542, 605, 860, 1263
TaiI ACGT 3 cut(s) 582, 917, 1109
TaqI TCGA 1 cut(s) 1158
TasI AATT 3 cut(s) 981, 1117, 1149
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 1010
TfiI GAWTC 4 cut(s) 233, 706, 797, 1139
Tru1I TTAA 2 cut(s) 654, 980
Tru9I TTAA 2 cut(s) 654, 980
TscAI CASTG 3 cut(s) 352, 577, 610
TseI GCWGC 2 cut(s) 128, 891
TspDTI ATGAA 3 cut(s) 186, 434, 907
TspGWI ACGGA 2 cut(s) 81, 957
TspRI CASTG 3 cut(s) 352, 577, 610
Van91I CCANNNNNTGG 1 cut(s) 1286
VpaK11BI GGWCC 2 cut(s) 885, 944
XceI RCATGY 1 cut(s) 745
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XmiI GTMKAC 2 cut(s) 279, 939
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 3 cut(s) 248, 986, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.