Rorug04G0309100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0018028
Physical Location & Seq
Forward (+)
48465203 .. 48466907
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0309100.1

Sequence Viewer

Length: 936 bp
ATGGGTGTGAGGTTCTTCACTCTCCAAATGATCCCCATGTGTTTTCATGTCACGGGCAACCATCATGTCTCCTCTTGCGTCCAGCTCCAACCGGACGACGATGAGGAGTATCAACCACCGCGCGCCAAGGTAGGTGGTAAGCGTGCTAAGGTAGGTGGTAAGCGCGCGGTGGTTGGTACCATCAAGGTCGTTAAGTCCGACGGCCTTGTGAAGATCTACAACAAGCCGATTGATGTATCAGAGCTTATGAGGCAATTTCCCAAGCACCTAGTGTGTGCTTCCGACTCACTTTACATCGGCCAGAAAATCCCAGCTCTTTCGGAACACGACCAGCTCCAGCTCGGCCGAAAGTACTTTCTGCTACCGAAGCACTTTTTCCAGACTGTGCTCTCCTTCGTCACCATTGCCTCGTTCGCCACCTCCGGACCCGAATCCGAACCCGAACAAAAGCCCTCGCCGGTTCCCTCCACCAATTCCAAGAATGCGTTTCTAAGAAAGGCCGCGAATTGCGAGCCTTTTCATATACAGAAATCGGAATCCGGTTGCCTGAGAATACGTGTCTCCGACGAGTTTATATCGCAATTGTTGGAGGAAGGCAAGCTCAGCGACGAAGCTAAAGTCGAAGAAGAAGATGAACATGGTAAGAGTTTTGAGCCAAACAACAGCAAAGTCTGTACCACGCCGCAGTTACAGAAAGACTACTCGCAACTGGTTGGATCAAGACAATGGAAGCCGAGGCTCGAGCCAATTAGAGAGACCCGGGAAACCAAGAGAAGATCAAGACTTTCTTCGTTTGGGATGAGAAGATCAACGAAGAAATCTCAATCCAATTCATCAAAAGCAACACAGAGTTCAAAGAGTCCAAAGATTGCTACTTTAGTAAAATCTGAGCACCATTCCAAAACCAAGATCAAGATCAAATCATCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

311

Amino Acids

35.01

Weight (kDa)

9.72

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 59 - 252 2.3e-36 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 5 cut(s) 121, 123, 165, 167, 503
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 4 cut(s) 119, 167, 501, 683
AclWI GGATC 2 cut(s) 25, 724
AcoI YGGCCR 2 cut(s) 298, 343
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 3 cut(s) 178, 353, 676
AflIII ACRYGT 1 cut(s) 556
AgsI TTSAA 1 cut(s) 855
AluBI AGCT 7 cut(s) 85, 244, 314, 334, 340, 601, 614
AluI AGCT 7 cut(s) 85, 244, 314, 334, 340, 601, 614
Alw21I GWGCWC 2 cut(s) 390, 894
Alw26I GTCTC 3 cut(s) 73, 565, 749
AlwI GGATC 2 cut(s) 25, 724
Ama87I CYCGRG 2 cut(s) 740, 759
Aor13HI TCCGGA 1 cut(s) 422
AoxI GGCC 4 cut(s) 202, 298, 343, 498
ArsI GACNNNNNNTTYG 2 cut(s) 603, 635
Asp718I GGTACC 1 cut(s) 176
AspLEI GCGC 4 cut(s) 123, 125, 165, 167
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 2 cut(s) 760, 761
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 2 cut(s) 740, 759
AvaII GGWCC 1 cut(s) 425
BanI GGYRCC 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 390, 894
BccI CCATC 2 cut(s) 69, 188
BceAI ACGGC 1 cut(s) 217
BcnI CCSGG 2 cut(s) 760, 761
BcoDI GTCTC 3 cut(s) 73, 565, 749
BfaI CTAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 213
BisI GCNGC 2 cut(s) 501, 683
BlpI GCTNAGC 1 cut(s) 602
BlsI GCNGC 2 cut(s) 502, 684
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 2 cut(s) 760, 761
Bme18I GGWCC 1 cut(s) 425
BmeT110I CYCGRG 2 cut(s) 740, 759
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 3 cut(s) 178, 427, 462
BmrFI CCNGG 2 cut(s) 760, 761
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 602
BpuMI CCSGG 2 cut(s) 760, 761
BsaAI YACGTR 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 914
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 3 cut(s) 126, 734, 759
BsaWI WCCGGW 3 cut(s) 91, 422, 539
Bse118I RCCGGY 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 714
Bse3DI GCAATG 1 cut(s) 402
Bse8I GATNNNNATC 1 cut(s) 914
BseAI TCCGGA 1 cut(s) 422
BseDI CCNNGG 3 cut(s) 126, 734, 759
BseGI GGATG 1 cut(s) 804
BseJI GATNNNNATC 1 cut(s) 914
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 539, 616, 879
BseNI ACTGG 1 cut(s) 714
BsePI GCGCGC 2 cut(s) 121, 163
BseRI GAGGAG 2 cut(s) 61, 119
BseX3I CGGCCG 1 cut(s) 343
BseYI CCCAGC 1 cut(s) 310
Bsh1236I CGCG 5 cut(s) 121, 123, 165, 167, 503
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 4 cut(s) 204, 300, 345, 500
BshNI GGYRCC 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 390, 894
BsiHKCI CYCGRG 2 cut(s) 740, 759
BsiSI CCGG 5 cut(s) 92, 423, 458, 540, 760
BsmAI GTCTC 3 cut(s) 73, 565, 749
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 4 cut(s) 204, 300, 345, 500
Bso31I GGTCTC 1 cut(s) 749
BsoBI CYCGRG 2 cut(s) 740, 759
Bsp1286I GDGCHC 2 cut(s) 390, 894
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 7 cut(s) 30, 213, 716, 776, 806, 909, 915
Bsp1720I GCTNAGC 1 cut(s) 602
BspACI CCGC 4 cut(s) 119, 167, 501, 683
BspANI GGCC 4 cut(s) 204, 300, 345, 500
BspCNI CTCAG 3 cut(s) 540, 615, 880
BspEI TCCGGA 1 cut(s) 422
BspFNI CGCG 5 cut(s) 121, 123, 165, 167, 503
BspLI GGNNCC 3 cut(s) 178, 427, 462
BspPI GGATC 2 cut(s) 25, 724
BspT107I GGYRCC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 749
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 457
BsrI ACTGG 1 cut(s) 714
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 3 cut(s) 126, 734, 759
BssHII GCGCGC 2 cut(s) 121, 163
BssMI GATC 7 cut(s) 30, 213, 716, 776, 806, 909, 915
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 5 cut(s) 123, 144, 165, 512, 599
BstDEI CTNAG 5 cut(s) 147, 491, 548, 602, 888
BstF5I GGATG 1 cut(s) 804
BstFNI CGCG 5 cut(s) 121, 123, 165, 167, 503
BstHHI GCGC 4 cut(s) 123, 125, 165, 167
BstKTI GATC 7 cut(s) 33, 216, 719, 779, 809, 912, 918
BstMAI GTCTC 3 cut(s) 73, 565, 749
BstMBI GATC 7 cut(s) 30, 213, 716, 776, 806, 909, 915
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 4 cut(s) 250, 367, 413, 603
BstSCI CCNGG 2 cut(s) 758, 759
BstUI CGCG 5 cut(s) 121, 123, 165, 167, 503
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BstZI CGGCCG 1 cut(s) 343
BsuRI GGCC 4 cut(s) 204, 300, 345, 500
BtsCI GGATG 1 cut(s) 804
Cac8I GCNNGC 5 cut(s) 123, 144, 165, 512, 599
CfoI GCGC 4 cut(s) 123, 125, 165, 167
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 425
Cfr9I CCCGGG 1 cut(s) 759
CseI GACGC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 177, 352, 675
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 4 cut(s) 37, 47, 65, 638
CviQI GTAC 3 cut(s) 177, 352, 675
DdeI CTNAG 5 cut(s) 147, 491, 548, 602, 888
DpnI GATC 7 cut(s) 32, 215, 718, 778, 808, 911, 917
DpnII GATC 7 cut(s) 30, 213, 716, 776, 806, 909, 915
DraIII CACNNNGTG 1 cut(s) 271
EaeI YGGCCR 2 cut(s) 298, 343
EagI CGGCCG 1 cut(s) 343
EclXI CGGCCG 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 749
Eco47I GGWCC 1 cut(s) 425
Eco52I CGGCCG 1 cut(s) 343
Eco88I CYCGRG 2 cut(s) 740, 759
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 4 cut(s) 40, 50, 68, 641
FaiI YATR 8 cut(s) 38, 48, 66, 248, 522, 524, 575, 639
FalI AAGNNNNNCTT 2 cut(s) 772, 804
FatI CATG 4 cut(s) 36, 46, 64, 637
Fnu4HI GCNGC 2 cut(s) 501, 683
FokI GGATG 1 cut(s) 811
Fsp4HI GCNGC 2 cut(s) 501, 683
FspBI CTAG 1 cut(s) 269
GlaI GCGC 4 cut(s) 122, 124, 164, 166
GluI GCNGC 2 cut(s) 501, 683
GsaI CCCAGC 1 cut(s) 314
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 4 cut(s) 204, 300, 345, 500
HapII CCGG 5 cut(s) 92, 423, 458, 540, 760
HgaI GACGC 1 cut(s) 67
HhaI GCGC 4 cut(s) 123, 125, 165, 167
Hin1II CATG 4 cut(s) 40, 50, 68, 641
Hin6I GCGC 4 cut(s) 121, 123, 163, 165
HinP1I GCGC 4 cut(s) 121, 123, 163, 165
HinfI GANTC 4 cut(s) 284, 431, 536, 859
HpaII CCGG 5 cut(s) 92, 423, 458, 540, 760
HphI GGTGA 1 cut(s) 391
Hpy188I TCNGA 8 cut(s) 199, 241, 283, 322, 436, 535, 565, 889
Hpy188III TCNNGA 5 cut(s) 379, 423, 720, 780, 913
Hpy99I CGWCG 4 cut(s) 101, 203, 569, 611
HpyAV CCTTC 2 cut(s) 403, 587
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 556
HpyF10VI GCNNNNNNNGC 4 cut(s) 250, 367, 413, 603
HpyF3I CTNAG 5 cut(s) 147, 491, 548, 602, 888
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 4 cut(s) 40, 50, 68, 641
HspAI GCGC 4 cut(s) 121, 123, 163, 165
Kpn2I TCCGGA 1 cut(s) 422
KpnI GGTACC 1 cut(s) 180
Kzo9I GATC 7 cut(s) 30, 213, 716, 776, 806, 909, 915
LmnI GCTCC 2 cut(s) 90, 339
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 3 cut(s) 49, 397, 687
MalI GATC 7 cut(s) 32, 215, 718, 778, 808, 911, 917
MboI GATC 7 cut(s) 30, 213, 716, 776, 806, 909, 915
MboII GAAGA 9 cut(s) 7, 223, 635, 638, 641, 780, 786, 816, 826
MfeI CAATTG 1 cut(s) 581
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 390, 894
MluCI AATT 6 cut(s) 254, 472, 505, 581, 747, 829
MlyI GAGTC 2 cut(s) 278, 868
MmeI TCCRAC 6 cut(s) 112, 222, 306, 567, 588, 694
MroI TCCGGA 1 cut(s) 422
MseI TTAA 1 cut(s) 192
MspI CCGG 5 cut(s) 92, 423, 458, 540, 760
MspR9I CCNGG 2 cut(s) 760, 761
MunI CAATTG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 487
MvnI CGCG 5 cut(s) 121, 123, 165, 167, 503
MwoI GCNNNNNNNGC 4 cut(s) 250, 367, 413, 603
NciI CCSGG 2 cut(s) 760, 761
NdeII GATC 7 cut(s) 30, 213, 716, 776, 806, 909, 915
NlaIII CATG 4 cut(s) 40, 50, 68, 641
NlaIV GGNNCC 3 cut(s) 178, 427, 462
NmeAIII GCCGAG 2 cut(s) 321, 759
NmuCI GTSAC 2 cut(s) 49, 397
PaeR7I CTCGAG 1 cut(s) 740
PauI GCGCGC 2 cut(s) 121, 163
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 431, 536
PkrI GCNGC 2 cut(s) 502, 684
PleI GAGTC 2 cut(s) 278, 867
PpsI GAGTC 2 cut(s) 278, 867
Ppu21I YACGTR 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 178, 427, 462
PspPI GGNCC 1 cut(s) 425
PspXI VCTCGAGB 1 cut(s) 740
PsuI RGATCY 1 cut(s) 213
PteI GCGCGC 2 cut(s) 121, 163
RsaI GTAC 3 cut(s) 178, 353, 676
RsaNI GTAC 3 cut(s) 177, 352, 675
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 501, 683
Sau3AI GATC 7 cut(s) 30, 213, 716, 776, 806, 909, 915
Sau96I GGNCC 1 cut(s) 425
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 2 cut(s) 278, 868
ScrFI CCNGG 2 cut(s) 760, 761
SduI GDGCHC 2 cut(s) 390, 894
Sfr274I CTCGAG 1 cut(s) 740
SinI GGWCC 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 740
SmaI CCCGGG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
Sse9I AATT 6 cut(s) 254, 472, 505, 581, 747, 829
SsiI CCGC 4 cut(s) 119, 167, 501, 683
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 758, 759
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 621, 741
TasI AATT 6 cut(s) 254, 472, 505, 581, 747, 829
TatI WGTACW 1 cut(s) 351
TauI GCSGC 2 cut(s) 503, 685
TfiI GAWTC 2 cut(s) 431, 536
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 2 cut(s) 49, 397
Tsp45I GTSAC 2 cut(s) 49, 397
TspDTI ATGAA 4 cut(s) 35, 509, 648, 822
TspMI CCCGGG 1 cut(s) 759
VpaK11BI GGWCC 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 740
XmaI CCCGGG 1 cut(s) 759
XspI CTAG 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.