Rh4AG360200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018028
Physical Location & Seq
Reverse (-)
66987262 .. 66988023
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG360200.1

Sequence Viewer

Length: 762 bp
ATGCTCTTGATCCCATGTACTTCCGAAGAAAAGCTGAGACTGTACAGCATTGCCGAAAGAGAAGTCTACAGCAATATTGAGTTACCATTGCGTTGTAATAATTCTAGGAGGTGTTGTGGCTCCAACTACGACAGTGGTGGTTGGTTGACCATAGTAGATCTAGTAGAGCGTGAGTTGCCATATTTTGATATAACTCTCACGAACCCTTTCAGAAAAGAAGTGGCACCCATTCATCTTCCTCGTTTGCAATCCAAATATTTTTCTCAAAAAGGACGTCGGCAGCTCCCGAAGGTTATATTATCCGGTGATCCCACATTGAATCCCGACAGTTTTGTGGTTTTAGCAATCAATAGTCAATTTCAATATGGACACCCGGTGTCTTCCATTAAGGGACTAAATAGTTATTGGATTCATTGGGACTTTGTATATAACGGTACTGATGCCATAGTTTATAAAAGCCAGATCTACTTGGTTACTGCTGATAGATGGCTTGCTTTGTTGGATGTTGATCAGGCAATAACAAACATATTCCTTCCGCCTCAACCACTTCTTCCGCCAGCTAAGGTGTATCTTGTAGAATCTACACGGGGAGACCTGTTGCTTGTTCAAAGATTCATGGAACTAAAAAATAAGAATGTGAACGGTTTGCATCAGAAATTTTGGACCAATAGCTTCGTTATTCACAAGGTGGTGTTCATCAAGAGAGACAGAGCTGGACGGAGATATAAACTACTTAAAGTTTACAGAGGGGACGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

253

Amino Acids

29.35

Weight (kDa)

9.36

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 14 - 229 2.9e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AatII GACGTC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 536, 554
AclWI GGATC 2 cut(s) 4, 302
AcsI RAATTY 1 cut(s) 656
AcyI GRCGYC 1 cut(s) 274
AdeI CACNNNGTG 2 cut(s) 376, 688
AfaI GTAC 3 cut(s) 19, 44, 436
AgsI TTSAA 3 cut(s) 319, 362, 608
AluBI AGCT 5 cut(s) 34, 283, 560, 672, 713
AluI AGCT 5 cut(s) 34, 283, 560, 672, 713
Alw26I GTCTC 3 cut(s) 31, 585, 699
AlwI GGATC 2 cut(s) 4, 302
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 656
ArsI GACNNNNNNTTYG 4 cut(s) 48, 80, 259, 291
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 663
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 663
BanI GGYRCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 480
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 3 cut(s) 31, 585, 699
BfaI CTAG 2 cut(s) 105, 161
BfmI CTRYAG 1 cut(s) 67
BglII AGATCT 2 cut(s) 157, 462
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 663
BmgT120I GGNCC 1 cut(s) 663
BmiI GGNNCC 2 cut(s) 121, 225
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 2 cut(s) 430, 658
BpiI GAAGAC 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 585
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bse3DI GCAATG 2 cut(s) 48, 86
Bse8I GATNNNNATC 1 cut(s) 507
BseGI GGATG 1 cut(s) 508
BseJI GATNNNNATC 1 cut(s) 507
BseMI GCAATG 2 cut(s) 48, 86
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 292
BshNI GGYRCC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 303, 374
BslFI GGGAC 2 cut(s) 405, 431
BsmAI GTCTC 3 cut(s) 31, 585, 699
BsmFI GGGAC 2 cut(s) 405, 431
Bso31I GGTCTC 1 cut(s) 585
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 5 cut(s) 9, 157, 307, 462, 508
BspACI CCGC 2 cut(s) 536, 554
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 121, 225
BspPI GGATC 2 cut(s) 4, 302
BspT107I GGYRCC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 585
BsrDI GCAATG 2 cut(s) 48, 86
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 5 cut(s) 9, 157, 307, 462, 508
BssNI GRCGYC 1 cut(s) 274
Bst4CI ACNGT 5 cut(s) 42, 134, 329, 434, 644
BstACI GRCGYC 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 492, 558
BstDEI CTNAG 2 cut(s) 35, 561
BstF5I GGATG 1 cut(s) 508
BstKTI GATC 5 cut(s) 12, 160, 310, 465, 511
BstMAI GTCTC 3 cut(s) 31, 585, 699
BstMBI GATC 5 cut(s) 9, 157, 307, 462, 508
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 2 cut(s) 157, 462
BstYI RGATCY 2 cut(s) 157, 462
BtsCI GGATG 1 cut(s) 508
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 492, 558
Cfr13I GGNCC 1 cut(s) 663
Csp6I GTAC 3 cut(s) 18, 43, 435
CviAII CATG 2 cut(s) 15, 616
CviJI RGCY 8 cut(s) 34, 120, 283, 459, 490, 560, 672, 713
CviKI_1 RGCY 8 cut(s) 34, 120, 283, 459, 490, 560, 672, 713
CviQI GTAC 3 cut(s) 18, 43, 435
DdeI CTNAG 2 cut(s) 35, 561
DpnI GATC 5 cut(s) 11, 159, 309, 464, 510
DpnII GATC 5 cut(s) 9, 157, 307, 462, 508
DraIII CACNNNGTG 2 cut(s) 376, 688
EciI GGCGGA 2 cut(s) 525, 543
Eco31I GGTCTC 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 663
FaeI CATG 2 cut(s) 18, 619
FaqI GGGAC 2 cut(s) 405, 431
FatI CATG 2 cut(s) 14, 615
FbaI TGATCA 1 cut(s) 508
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 2 cut(s) 105, 161
GluI GCNGC 1 cut(s) 281
HapII CCGG 2 cut(s) 303, 374
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 2 cut(s) 18, 619
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 4 cut(s) 319, 409, 578, 612
HpaII CCGG 2 cut(s) 303, 374
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 4 cut(s) 67, 147, 640, 742
Hpy188I TCNGA 4 cut(s) 25, 212, 654, 761
Hpy188III TCNNGA 5 cut(s) 7, 199, 286, 323, 700
Hpy8I GTNNAC 4 cut(s) 67, 147, 640, 742
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 2 cut(s) 283, 542
HpyCH4III ACNGT 5 cut(s) 42, 134, 329, 434, 644
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 247, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 35, 561
HpySE526I ACGT 1 cut(s) 274
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 2 cut(s) 18, 619
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 5 cut(s) 9, 157, 307, 462, 508
LmnI GCTCC 2 cut(s) 125, 288
LpnPI CCDG 7 cut(s) 316, 387, 473, 497, 570, 608, 699
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 2 cut(s) 430, 658
MaeI CTAG 2 cut(s) 105, 161
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 81, 472
MalI GATC 5 cut(s) 11, 159, 309, 464, 510
MboI GATC 5 cut(s) 9, 157, 307, 462, 508
MboII GAAGA 4 cut(s) 38, 227, 372, 542
MflI RGATCY 2 cut(s) 157, 462
MluCI AATT 3 cut(s) 100, 356, 656
MmeI TCCRAC 2 cut(s) 147, 480
MnlI CCTC 4 cut(s) 102, 249, 549, 740
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 2 cut(s) 387, 735
MspI CCGG 2 cut(s) 303, 374
MspR9I CCNGG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 374
NdeII GATC 5 cut(s) 9, 157, 307, 462, 508
NlaIII CATG 2 cut(s) 18, 619
NlaIV GGNNCC 2 cut(s) 121, 225
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 4 cut(s) 319, 409, 578, 612
PflFI GACNNNGTC 1 cut(s) 755
PkrI GCNGC 1 cut(s) 282
PsiI TTATAA 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 121, 225
PspPI GGNCC 1 cut(s) 663
PsuI RGATCY 2 cut(s) 157, 462
PsyI GACNNNGTC 1 cut(s) 755
RsaI GTAC 3 cut(s) 19, 44, 436
RsaNI GTAC 3 cut(s) 18, 43, 435
SaqAI TTAA 2 cut(s) 387, 735
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 5 cut(s) 9, 157, 307, 462, 508
Sau96I GGNCC 1 cut(s) 663
ScrFI CCNGG 1 cut(s) 374
SfaNI GCATC 2 cut(s) 430, 658
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 663
Sse9I AATT 3 cut(s) 100, 356, 656
SsiI CCGC 2 cut(s) 536, 554
SspI AATATT 2 cut(s) 76, 257
SspMI CTAG 2 cut(s) 105, 161
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 5 cut(s) 42, 134, 329, 434, 644
TaiI ACGT 1 cut(s) 277
TasI AATT 3 cut(s) 100, 356, 656
TatI WGTACW 2 cut(s) 17, 42
TfiI GAWTC 4 cut(s) 319, 409, 578, 612
Tru1I TTAA 2 cut(s) 387, 735
Tru9I TTAA 2 cut(s) 387, 735
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 4 cut(s) 221, 401, 604, 685
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 755
VpaK11BI GGWCC 1 cut(s) 663
XapI RAATTY 1 cut(s) 656
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 2 cut(s) 105, 161
ZraI GACGTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.