Rw0G016430

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
OG0018028
Physical Location & Seq
Reverse (-)
320307 .. 321669
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016430.1

Sequence Viewer

Length: 564 bp
ATGTGTTCAAAGACGTCTAACGAGAAGCTCTGTCGTATAGACTGCCCAGATTGGGCAAGTCTTCACAGAGCCTCTGTCTATTTGTTTCTGGACAAGTTTTTGGAACCCATTGATCTTGTTCATTTTGCTGCAGTTTGCAAGGAGTGGCGTGCAGTTTCAGAAGATTATAATGAAGCAAAACAGCGGTGGTGTAAAAAAGTCTACAGCAATATTGAGTCACCATTGCCTTGTAGTAATTCTAGGAGGTGTTTTGGCTCCAACCACGACAGTGGTGGTTGGTTGACCATAGTAGATCTAGTAGAGCGTGAGTTGCCATATTTAGATATAACTCTCACGAACCCATTCAGAAAAGAAGTGGCACCCATTAACCTTCCTCGTTTGCAATTCAAATATTTATCTCAAGAAGGACGTTGGCAGCTCCCGAAGGTTATATTATCCGGTGATCCCACATTGAACCCGGACAGTTTTGTGGTTTTAACAATCAATAGTCAATTTCAAAATGGACACCAGGTGTCTTCCATTAAGGGACTAAATAGTTATTGTTCATTGGGACTTTGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

187

Amino Acids

21.37

Weight (kDa)

7.53

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 66 - 165 3.8e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 168, 562
AatII GACGTC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 201
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 4 cut(s) 9, 388, 454, 497
AjnI CCWGG 1 cut(s) 507
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 2 cut(s) 28, 418
AluI AGCT 2 cut(s) 28, 418
AlwI GGATC 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 128, 415
Asp700I GAANNNNTTC 1 cut(s) 341
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 210, 452
BanI GGYRCC 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 53, 507
BbvI GCAGC 2 cut(s) 115, 427
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 1 cut(s) 458
BfaI CTAG 2 cut(s) 240, 296
BfmI CTRYAG 2 cut(s) 129, 202
BglII AGATCT 1 cut(s) 292
BisI GCNGC 2 cut(s) 129, 416
BlsI GCNGC 2 cut(s) 130, 417
Bme1390I CCNGG 2 cut(s) 458, 509
BmiI GGNNCC 3 cut(s) 105, 256, 360
BmrFI CCNGG 2 cut(s) 458, 509
BpiI GAAGAC 2 cut(s) 53, 507
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 437
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 509
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 115, 427
BsgI GTGCAG 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 438, 458
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 540
Bsp143I GATC 3 cut(s) 112, 292, 442
BspACI CCGC 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 105, 256, 360
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 221
BssMI GATC 3 cut(s) 112, 292, 442
BssNI GRCGYC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 269, 464
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 150
BstKTI GATC 3 cut(s) 115, 295, 445
BstMBI GATC 3 cut(s) 112, 292, 442
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 2 cut(s) 456, 507
BstSFI CTRYAG 2 cut(s) 129, 202
BstV1I GCAGC 2 cut(s) 115, 427
BstV2I GAAGAC 2 cut(s) 53, 507
BstX2I RGATCY 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 150
CsiI ACCWGGT 1 cut(s) 507
CviJI RGCY 4 cut(s) 28, 71, 255, 418
CviKI_1 RGCY 4 cut(s) 28, 71, 255, 418
DpnI GATC 3 cut(s) 114, 294, 444
DpnII GATC 3 cut(s) 112, 292, 442
DraIII CACNNNGTG 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 507
FaiI YATR 7 cut(s) 38, 168, 287, 316, 326, 431, 562
FaqI GGGAC 1 cut(s) 540
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 129, 416
Fsp4HI GCNGC 2 cut(s) 129, 416
FspBI CTAG 2 cut(s) 240, 296
GluI GCNGC 2 cut(s) 129, 416
HapII CCGG 2 cut(s) 438, 458
Hin1I GRCGYC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 1 cut(s) 215
HpaII CCGG 2 cut(s) 438, 458
HphI GGTGA 2 cut(s) 210, 452
Hpy166II GTNNAC 2 cut(s) 202, 282
Hpy188I TCNGA 2 cut(s) 160, 347
Hpy188III TCNNGA 4 cut(s) 89, 334, 401, 421
Hpy8I GTNNAC 2 cut(s) 202, 282
HpyAV CCTTC 3 cut(s) 380, 398, 418
HpyCH4III ACNGT 2 cut(s) 269, 464
HpyCH4IV ACGT 2 cut(s) 14, 409
HpyCH4V TGCA 4 cut(s) 131, 138, 152, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpySE526I ACGT 2 cut(s) 14, 409
Hsp92I GRCGYC 1 cut(s) 14
Kzo9I GATC 3 cut(s) 112, 292, 442
LmnI GCTCC 2 cut(s) 260, 423
LpnPI CCDG 6 cut(s) 60, 74, 451, 471, 494, 521
Lsp1109I GCAGC 2 cut(s) 115, 427
MabI ACCWGGT 1 cut(s) 507
MaeI CTAG 2 cut(s) 240, 296
MaeII ACGT 2 cut(s) 14, 409
MaeIII GTNAC 1 cut(s) 216
MalI GATC 3 cut(s) 114, 294, 444
MboI GATC 3 cut(s) 112, 292, 442
MboII GAAGA 3 cut(s) 53, 173, 507
MflI RGATCY 1 cut(s) 292
MluCI AATT 3 cut(s) 235, 383, 491
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 3 cut(s) 82, 237, 384
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 3 cut(s) 366, 476, 522
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 2 cut(s) 438, 458
MspR9I CCNGG 2 cut(s) 458, 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 458
NdeII GATC 3 cut(s) 112, 292, 442
NlaIV GGNNCC 3 cut(s) 105, 256, 360
NmuCI GTSAC 1 cut(s) 216
OliI CACNNNNGTG 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 130, 417
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PsiI TTATAA 2 cut(s) 168, 562
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 3 cut(s) 105, 256, 360
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 3 cut(s) 366, 476, 522
SatI GCNGC 2 cut(s) 129, 416
Sau3AI GATC 3 cut(s) 112, 292, 442
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 458, 509
SetI ASST 8 cut(s) 17, 30, 248, 372, 412, 420, 429, 513
SexAI ACCWGGT 1 cut(s) 507
SfcI CTRYAG 2 cut(s) 129, 202
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 3 cut(s) 235, 383, 491
SsiI CCGC 1 cut(s) 184
SspI AATATT 2 cut(s) 211, 392
SspMI CTAG 2 cut(s) 240, 296
StyD4I CCNGG 2 cut(s) 456, 507
TaaI ACNGT 2 cut(s) 269, 464
TaiI ACGT 2 cut(s) 17, 412
TasI AATT 3 cut(s) 235, 383, 491
Tru1I TTAA 3 cut(s) 366, 476, 522
Tru9I TTAA 3 cut(s) 366, 476, 522
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 216
TseI GCWGC 2 cut(s) 128, 415
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 3 cut(s) 110, 186, 534
TspRI CASTG 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 2 cut(s) 240, 296
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.