Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014915

Physical Location & Seq

Genomic Coordinates Forward (+)

31395262 .. 31398853

Gene Structure 3592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGAAACAAGTCCACCATGAACGTAAGCCTTCTGTTCTTCTCTGCTGTGTTTCTTGTACTTGTAAGCTGCTGCAGTGCAGCAGATGCAGATCATGAGCTACGACGGCTGCATCACGCTTCCGCGAAAGCCGACGGATCTCTGAGCTTCTTGGTTATTGGAGACTGGGGAAGAAGAGGAAATTATAATCAATCCCGAGTTGCTCATCAGATGGGAATAGTTGGAGAGAAGTTGGATATCGATTTTGTAATATCCACCGGCGATAACTTTTACGATGATGGATTGACGGGCGTCGACGATCCGGCTTTTGAAGAGTCGTTTTCCAAAATCTACACAGCTCCTAGCTTGCAAAAGCAATGGTACAATGTTCTTGGTAACCATGATTACAGGGGTAATGTTGAAGCACAACTGAGTCCGGTCCTGAATGGGTTGGATAGCAGATGGCTTTGCATGAGATCCTTCATAGTTGATGCAGAAATTGTAGAGTTCTTCTTCGTGGACACAACTCCCTTTGCAGACAAATACTTCACTGACCCAGAGGACCATGTCTACGACTGGAGTGGCATATTACCCAGAAATGGGTACCTCTCCAATATTCTCAGGAACGTGGATTCAGCTCTCAAAGAATCGAATGCGAAGTGGAAGATTGTAGTGGGTCACCATGGAATTAGAAGCGCTGGAATACATGGTGATACTAAAGAGCTTGTGTCACGGCTTCTTCCAATTCTTGAAGCCAACAATGTTGATCTTTACATCAATGGGCATGACCATTGCTTGCAACACATTACTACTCCCAACAGCCCGATTCAGTTTCTAACGAGTGGTGGTGGATCCAAGGCATGGAGAGGAGTTGTAATGCCGTATGATCAAAGTGAAATAAAGCTGTATCACGACGGACAGGGTTTCATGTCAGTGCAAGTCACTCCAAGCCAAGTAGATATTGCATTCTATGATGTTTTTGGTAATGTGTTGCACAAATGGGGCACATCAAAGGACCAGCTTTACTCTACTGCCATGTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

342

Amino Acids

38.15

Weight (kDa)

5.45

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	49 - 258	3.4e-19	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33011 FvH4_4g33011
malus_domestica	MD13G1016000.v1.1 MD16G1013600.v1.1
prunus_persica	Prupe.1G337600_v2.0.a1
pyrus_communis	pycom13g01370
rosa_chinensis	RchiOBHm_Chr4g0442051
rosa_laevigata	RLG00000006048
rosa_multiflora	Rmu_sc0002501.1_g000009
rosa_roxburghii	Rroxscaffold_5G00382970
rosa_rugosa	Rorug04G0338300
rosa_samantha	Rh4AG390000 Rh4BG403400 Rh4CG418500 Rh4DG396600
rosa_wichuraiana	Rw4G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	582
AccB7I	CCANNNNNTGG	1 cut(s)	840
AccI	GTMKAC	2 cut(s)	294, 549
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	5 cut(s)	145, 293, 450, 825, 838
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	3 cut(s)	60, 362, 584
AfeI	AGCGCT	1 cut(s)	676
AfiI	CCNNNNNNNGG	3 cut(s)	578, 579, 840
AgsI	TTSAA	3 cut(s)	311, 401, 731
AluBI	AGCT	9 cut(s)	69, 100, 147, 338, 345, 617, 703, 883, 1000
AluI	AGCT	9 cut(s)	69, 100, 147, 338, 345, 617, 703, 883, 1000
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	5 cut(s)	145, 293, 450, 825, 838
Ama87I	CYCGRG	1 cut(s)	195
Aor51HI	AGCGCT	1 cut(s)	676
ApeKI	GCWGC	4 cut(s)	69, 72, 80, 109
Asp718I	GGTACC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	3 cut(s)	418, 541, 994
AsuHPI	GGTGA	2 cut(s)	650, 701
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	3 cut(s)	418, 541, 994
BaeGI	GKGCMC	1 cut(s)	986
BamHI	GGATCC	1 cut(s)	830
BanI	GGYRCC	1 cut(s)	582
BbvI	GCAGC	4 cut(s)	56, 59, 92, 96
BccI	CCATC	3 cut(s)	205, 272, 435
BceAI	ACGGC	3 cut(s)	122, 728, 844
BclI	TGATCA	1 cut(s)	865
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	73
BfoI	RGCGCY	1 cut(s)	678
BisI	GCNGC	4 cut(s)	70, 73, 81, 110
BlsI	GCNGC	4 cut(s)	71, 74, 82, 111
Bme18I	GGWCC	3 cut(s)	418, 541, 994
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	3 cut(s)	418, 541, 994
BmiI	GGNNCC	2 cut(s)	584, 832
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	76, 121, 460
BmuI	ACTGGG	1 cut(s)	175
BoxI	GACNNNNGTC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	577
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	661, 834
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	3 cut(s)	578, 579, 840
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	170, 560
Bse3DI	GCAATG	2 cut(s)	362, 769
Bse8I	GATNNNNATC	1 cut(s)	90
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	661, 834
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	3 cut(s)	578, 579, 840
BseMI	GCAATG	2 cut(s)	362, 769
BseMII	CTCAG	3 cut(s)	134, 401, 613
BseNI	ACTGG	2 cut(s)	170, 560
BseRI	GAGGAG	1 cut(s)	861
BseSI	GKGCMC	1 cut(s)	986
BseXI	GCAGC	4 cut(s)	56, 59, 92, 96
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	258, 302, 416
BslI	CCNNNNNNNGG	3 cut(s)	578, 579, 840
BsmAI	GTCTC	1 cut(s)	156
BsmI	GAATGC	2 cut(s)	637, 944
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	986
Bsp143I	GATC	7 cut(s)	91, 137, 298, 455, 745, 830, 865
Bsp19I	CCATGG	1 cut(s)	661
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	3 cut(s)	135, 402, 612
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	584, 832
BspMAI	CTGCAG	1 cut(s)	77
BspPI	GGATC	5 cut(s)	145, 293, 450, 825, 838
BspT107I	GGYRCC	1 cut(s)	582
BsrDI	GCAATG	2 cut(s)	362, 769
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	170, 560
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	661, 834
BssMI	GATC	7 cut(s)	91, 137, 298, 455, 745, 830, 865
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	661, 834
Bst6I	CTCTTC	2 cut(s)	169, 306
BstACI	GRCGYC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	347, 776
BstDEI	CTNAG	3 cut(s)	143, 410, 599
BstDSI	CCRYGG	1 cut(s)	661
BstEII	GGTNACC	2 cut(s)	374, 656
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	7 cut(s)	94, 140, 301, 458, 748, 833, 868
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	7 cut(s)	91, 137, 298, 455, 745, 830, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 106
BstPAI	GACNNNNGTC	1 cut(s)	290
BstPI	GGTNACC	2 cut(s)	374, 656
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	986
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	4 cut(s)	56, 59, 92, 96
BstX2I	RGATCY	3 cut(s)	137, 455, 830
BstYI	RGATCY	3 cut(s)	137, 455, 830
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	3 cut(s)	82, 528, 918
Cac8I	GCNNGC	2 cut(s)	347, 776
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	418, 541, 994
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	59, 361, 583
CviQI	GTAC	3 cut(s)	59, 361, 583
DdeI	CTNAG	3 cut(s)	143, 410, 599
DpnI	GATC	7 cut(s)	93, 139, 300, 457, 747, 832, 867
DpnII	GATC	7 cut(s)	91, 137, 298, 455, 745, 830, 865
Eam1104I	CTCTTC	2 cut(s)	169, 306
EarI	CTCTTC	2 cut(s)	169, 306
Eco130I	CCWWGG	2 cut(s)	661, 834
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	3 cut(s)	418, 541, 994
Eco47III	AGCGCT	1 cut(s)	676
Eco88I	CYCGRG	1 cut(s)	195
Eco91I	GGTNACC	2 cut(s)	374, 656
EcoO65I	GGTNACC	2 cut(s)	374, 656
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	661, 834
ErhI	CCWWGG	2 cut(s)	661, 834
FbaI	TGATCA	1 cut(s)	865
FblI	GTMKAC	2 cut(s)	294, 549
Fnu4HI	GCNGC	4 cut(s)	70, 73, 81, 110
Fsp4HI	GCNGC	4 cut(s)	70, 73, 81, 110
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	4 cut(s)	70, 73, 81, 110
GsuI	CTGGAG	1 cut(s)	577
HaeII	RGCGCY	1 cut(s)	678
HapII	CCGG	3 cut(s)	258, 302, 416
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	5 cut(s)	314, 412, 611, 626, 805
HpaII	CCGG	3 cut(s)	258, 302, 416
HphI	GGTGA	2 cut(s)	650, 701
Hpy166II	GTNNAC	4 cut(s)	15, 295, 499, 550
Hpy188I	TCNGA	2 cut(s)	144, 210
Hpy188III	TCNNGA	6 cut(s)	95, 195, 421, 601, 728, 890
Hpy8I	GTNNAC	4 cut(s)	15, 295, 499, 550
Hpy99I	CGWCG	5 cut(s)	108, 137, 296, 299, 896
HpyAV	CCTTC	2 cut(s)	41, 469
HpyCH4IV	ACGT	2 cut(s)	24, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 106
HpyF3I	CTNAG	3 cut(s)	143, 410, 599
HpySE526I	ACGT	2 cut(s)	24, 606
Hsp92I	GRCGYC	1 cut(s)	291
HspAI	GCGC	1 cut(s)	675
KpnI	GGTACC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	7 cut(s)	91, 137, 298, 455, 745, 830, 865
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	4 cut(s)	56, 59, 92, 96
LweI	GCATC	3 cut(s)	76, 121, 460
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	24, 606
MaeIII	GTNAC	4 cut(s)	374, 656, 708, 919
MalI	GATC	7 cut(s)	93, 139, 300, 457, 747, 832, 867
MboI	GATC	7 cut(s)	91, 137, 298, 455, 745, 830, 865
MboII	GAAGA	8 cut(s)	31, 183, 186, 323, 481, 484, 655, 710
MflI	RGATCY	3 cut(s)	137, 455, 830
MhlI	GDGCHC	1 cut(s)	986
MluCI	AATT	4 cut(s)	181, 477, 666, 723
MlyI	GAGTC	2 cut(s)	323, 421
MmeI	TCCRAC	3 cut(s)	202, 213, 411
MnlI	CCTC	4 cut(s)	170, 532, 596, 839
MslI	CAYNNNNRTG	2 cut(s)	911, 1019
MspI	CCGG	3 cut(s)	258, 302, 416
Mva1269I	GAATGC	2 cut(s)	637, 944
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	86, 106
NcoI	CCATGG	1 cut(s)	661
NdeII	GATC	7 cut(s)	91, 137, 298, 455, 745, 830, 865
NlaIV	GGNNCC	2 cut(s)	584, 832
NmuCI	GTSAC	3 cut(s)	656, 708, 919
PagI	TCATGA	1 cut(s)	94
PctI	GAATGC	2 cut(s)	637, 944
PfeI	GAWTC	3 cut(s)	611, 626, 805
PflFI	GACNNNGTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	840
PkrI	GCNGC	4 cut(s)	71, 74, 82, 111
PleI	GAGTC	2 cut(s)	322, 420
PpsI	GAGTC	2 cut(s)	322, 420
PshAI	GACNNNNGTC	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	186
PspEI	GGTNACC	2 cut(s)	374, 656
PspN4I	GGNNCC	2 cut(s)	584, 832
PspPI	GGNCC	3 cut(s)	418, 541, 994
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	3 cut(s)	137, 455, 830
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	3 cut(s)	60, 362, 584
RsaNI	GTAC	3 cut(s)	59, 361, 583
RseI	CAYNNNNRTG	2 cut(s)	911, 1019
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	4 cut(s)	70, 73, 81, 110
Sau3AI	GATC	7 cut(s)	91, 137, 298, 455, 745, 830, 865
Sau96I	GGNCC	3 cut(s)	418, 541, 994
SchI	GAGTC	2 cut(s)	323, 421
SduI	GDGCHC	1 cut(s)	986
SfaNI	GCATC	3 cut(s)	76, 121, 460
SfcI	CTRYAG	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	257
SgrDI	CGTCGACG	1 cut(s)	293
SinI	GGWCC	3 cut(s)	418, 541, 994
SmiMI	CAYNNNNRTG	2 cut(s)	911, 1019
Sse9I	AATT	4 cut(s)	181, 477, 666, 723
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	661, 834
TaiI	ACGT	2 cut(s)	27, 609
TaqI	TCGA	3 cut(s)	240, 294, 629
TasI	AATT	4 cut(s)	181, 477, 666, 723
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	3 cut(s)	611, 626, 805
TscAI	CASTG	3 cut(s)	82, 535, 918
TseFI	GTSAC	3 cut(s)	656, 708, 919
TseI	GCWGC	4 cut(s)	69, 72, 80, 109
Tsp45I	GTSAC	3 cut(s)	656, 708, 919
TspDTI	ATGAA	3 cut(s)	35, 451, 895
TspGWI	ACGGA	2 cut(s)	150, 909
TspRI	CASTG	3 cut(s)	82, 535, 918
Tth111I	GACNNNGTC	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	840
VpaK11BI	GGWCC	3 cut(s)	418, 541, 994
XmiI	GTMKAC	2 cut(s)	294, 549
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.