Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014915

Physical Location & Seq

Genomic Coordinates Forward (+)

882592 .. 886779

Gene Structure 4188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCTAGATATGGAAAACATGACCATGATGAGGTCAAGTATTCTGTTCTCTGGTCTAATAATTCTATGCACCTTGTCATCTTTTACATCTTCTGCAGCGGAGCTACAACGATTCCCGCACGCATCGAAAGCCGATGGGTCTATCAGCTTTTTGGTTCTGGGGGATTGGGGAAGAAGAGGAGCCTACAACCAATCTCAAGTTGCTAATCAGATGGGAATAATTGGAGAGAAGTTGGATATTGACTTTGTAATATCCACCGGCGATAATTTTTACGAAAATGGATTGACGGGCATCGATGATCCACAATTTGAAGACTCATTTAGCAAAATCTACACAGCACCAAGCTTGCAAAAGCAGTGGTACAGTGTTCTGGGTAACCATGATTATAGATGTGATGTTGAGGCACAGTTGAGTCCTGTCCTTAGGAAATCGGATAGCAAATGGCTTTGCTTGAGATCCTTCATAGTTGATGCCGGTAAGGCTAAGGATGTGGATTCAGCATTAAAAGATTCTAATGCAAAGTGGAAGATTGTGGTTGGTCACCACGCGATTAGAACCGCTGGATATCATGGTGAAACTAAGGAGCTTGTAACACAGCTTCTCCCAATTCTTCTGGAAAACAATGTCGATCTTTACGTCAATGGCCACGACCATTGCTTAGAACACATAAGCAGTCCCAACAGCCCACTACAATTTCTAACAAGTGGTGGTGGTTCAAAGGCATGGAGGGGTGTAGTTAGCCCGTACAGTCCAAGCGAAATGAAGTTGTACTACGATGGGCAGGGTTTCATGTCAGTGCAAATCACTCAAACCGAATTGGATATTGCATTCTATGATGTTTTTGGCAATGTCTTGCACAAATGGGGGACATCAAAGCAGCACTACTCTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

299

Amino Acids

33.26

Weight (kDa)

5.65

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33011 FvH4_4g33011
malus_domestica	MD13G1016000.v1.1 MD16G1013600.v1.1
prunus_persica	Prupe.1G337600_v2.0.a1
pyrus_communis	pycom13g01370
rosa_chinensis	RchiOBHm_Chr4g0442051
rosa_laevigata	RLG00000006048
rosa_multiflora	Rmu_sc0002501.1_g000009
rosa_roxburghii	Rroxscaffold_5G00382970
rosa_rugosa	Rorug04G0338300
rosa_samantha	Rh4AG390000 Rh4BG403400 Rh4CG418500 Rh4DG396600
rosa_wichuraiana	Rw4G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	548
AciI	CCGC	3 cut(s)	98, 116, 558
AclWI	GGATC	2 cut(s)	293, 450
AcoI	YGGCCR	1 cut(s)	643
AfaI	GTAC	3 cut(s)	362, 746, 770
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	311, 717
AluBI	AGCT	5 cut(s)	103, 147, 345, 586, 598
AluI	AGCT	5 cut(s)	103, 147, 345, 586, 598
AlwI	GGATC	2 cut(s)	293, 450
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	2 cut(s)	95, 877
AsuHPI	GGTGA	2 cut(s)	533, 584
AxyI	CCTNAGG	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	645
BarI	GAAGNNNNNNTAC	4 cut(s)	582, 614, 755, 787
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	107, 889
BccI	CCATC	3 cut(s)	128, 205, 770
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	2 cut(s)	96, 878
BlsI	GCNGC	2 cut(s)	97, 879
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	3 cut(s)	131, 300, 460
BpiI	GAAGAC	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	180, 472
Bsa29I	ATCGAT	1 cut(s)	294
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	2 cut(s)	257, 473
Bse21I	CCTNAGG	1 cut(s)	422
Bse3DI	GCAATG	2 cut(s)	652, 853
BseCI	ATCGAT	1 cut(s)	294
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	2 cut(s)	652, 853
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	107, 889
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	1 cut(s)	645
BshVI	ATCGAT	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	258, 474
BslFI	GGGAC	2 cut(s)	660, 880
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	660, 880
BsmI	GAATGC	1 cut(s)	827
BsnI	GGCC	1 cut(s)	645
Bsp143I	GATC	3 cut(s)	298, 455, 628
BspACI	CCGC	3 cut(s)	98, 116, 558
BspANI	GGCC	1 cut(s)	645
BspDI	ATCGAT	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	2 cut(s)	293, 450
BsrDI	GCAATG	2 cut(s)	652, 853
BsrFI	RCCGGY	2 cut(s)	257, 473
BssAI	RCCGGY	2 cut(s)	257, 473
BssMI	GATC	3 cut(s)	298, 455, 628
Bst4CI	ACNGT	3 cut(s)	365, 408, 749
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	120, 347
BstDEI	CTNAG	4 cut(s)	422, 483, 579, 658
BstEII	GGTNACC	2 cut(s)	374, 539
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	3 cut(s)	301, 458, 631
BstMBI	GATC	3 cut(s)	298, 455, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 479
BstPI	GGTNACC	2 cut(s)	374, 539
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	107, 889
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	645
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	3 cut(s)	362, 370, 801
Cac8I	GCNNGC	2 cut(s)	120, 347
Cfr10I	RCCGGY	2 cut(s)	257, 473
ClaI	ATCGAT	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	361, 745, 769
CspCI	CAANNNNNGTGG	4 cut(s)	338, 373, 635, 670
CviAII	CATG	7 cut(s)	19, 25, 380, 569, 723, 790, 892
CviQI	GTAC	3 cut(s)	361, 745, 769
DdeI	CTNAG	4 cut(s)	422, 483, 579, 658
DpnI	GATC	3 cut(s)	300, 457, 630
DpnII	GATC	3 cut(s)	298, 455, 628
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	422
Eco91I	GGTNACC	2 cut(s)	374, 539
EcoO65I	GGTNACC	2 cut(s)	374, 539
EcoRV	GATATC	1 cut(s)	566
FaeI	CATG	7 cut(s)	22, 28, 383, 572, 726, 793, 895
FaqI	GGGAC	2 cut(s)	660, 880
FatI	CATG	7 cut(s)	18, 24, 379, 568, 722, 789, 891
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	96, 878
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	2 cut(s)	96, 878
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	2 cut(s)	96, 878
HaeIII	GGCC	1 cut(s)	645
HapII	CCGG	2 cut(s)	258, 474
Hin1II	CATG	7 cut(s)	22, 28, 383, 572, 726, 793, 895
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	5 cut(s)	111, 314, 412, 494, 509
HpaII	CCGG	2 cut(s)	258, 474
HphI	GGTGA	2 cut(s)	533, 584
Hpy188I	TCNGA	2 cut(s)	210, 433
Hpy188III	TCNNGA	1 cut(s)	614
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	3 cut(s)	365, 408, 749
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	7 cut(s)	69, 95, 349, 518, 799, 827, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 479
HpyF3I	CTNAG	4 cut(s)	422, 483, 579, 658
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	7 cut(s)	22, 28, 383, 572, 726, 793, 895
Kzo9I	GATC	3 cut(s)	298, 455, 628
LmnI	GCTCC	3 cut(s)	100, 179, 583
LpnPI	CCDG	9 cut(s)	36, 143, 271, 356, 429, 487, 546, 599, 767
Lsp1109I	GCAGC	2 cut(s)	107, 889
LweI	GCATC	3 cut(s)	131, 300, 460
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	3 cut(s)	374, 539, 589
MalI	GATC	3 cut(s)	300, 457, 630
MboI	GATC	3 cut(s)	298, 455, 628
MboII	GAAGA	6 cut(s)	81, 183, 186, 323, 538, 602
MflI	RGATCY	1 cut(s)	455
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	7 cut(s)	60, 219, 265, 305, 606, 692, 815
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	308, 421
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	24, 170, 394, 720
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	2 cut(s)	23, 794
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	2 cut(s)	98, 560
MspI	CCGG	2 cut(s)	258, 474
Mva1269I	GAATGC	1 cut(s)	827
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	2 cut(s)	128, 479
NdeII	GATC	3 cut(s)	298, 455, 628
NlaIII	CATG	7 cut(s)	22, 28, 383, 572, 726, 793, 895
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PctI	GAATGC	1 cut(s)	827
PfeI	GAWTC	3 cut(s)	111, 494, 509
PkrI	GCNGC	2 cut(s)	97, 879
PleI	GAGTC	2 cut(s)	308, 420
PpsI	GAGTC	2 cut(s)	308, 420
PspEI	GGTNACC	2 cut(s)	374, 539
PspN4I	GGNNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	3 cut(s)	362, 746, 770
RsaNI	GTAC	3 cut(s)	361, 745, 769
RseI	CAYNNNNRTG	2 cut(s)	23, 794
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	2 cut(s)	96, 878
Sau3AI	GATC	3 cut(s)	298, 455, 628
SchI	GAGTC	2 cut(s)	308, 421
SetI	ASST	8 cut(s)	35, 74, 105, 149, 347, 588, 600, 639
SfaNI	GCATC	3 cut(s)	131, 300, 460
SfcI	CTRYAG	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	257
SmiMI	CAYNNNNRTG	2 cut(s)	23, 794
SmlI	CTYRAG	2 cut(s)	195, 451
SmoI	CTYRAG	2 cut(s)	195, 451
Sse9I	AATT	7 cut(s)	60, 219, 265, 305, 606, 692, 815
SsiI	CCGC	3 cut(s)	98, 116, 558
SspMI	CTAG	1 cut(s)	5
TaaI	ACNGT	3 cut(s)	365, 408, 749
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	3 cut(s)	125, 294, 627
TasI	AATT	7 cut(s)	60, 219, 265, 305, 606, 692, 815
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	3 cut(s)	111, 494, 509
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	3 cut(s)	362, 370, 801
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	2 cut(s)	95, 877
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	4 cut(s)	451, 776, 778, 880
TspRI	CASTG	3 cut(s)	362, 370, 801
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.