Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014915

Physical Location & Seq

Genomic Coordinates Forward (+)

69647609 .. 69650459

Gene Structure 2851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAAAACAAGTCGACCATGAATGCAAACCTTCTGTTCTTCTCTGCTCTGTTTCTTGTACTTGTAAGCTGCTGCAGCTTATCCTCTTGTGCAGCAGATGCAGATCATGAGCTACGCCGGCTGCAACACGCTTCCGCCAAAGCCGACGGATCTCTGAGCTTCTTGGTCGTTGGAGATTGGGGAAGAAGAGGAACTTACAATCAATCCCGAGTTGCTCTTCAGATGGGAGTAATTGGAGAGAAGTTGGATATCGATTTTGTAATATCCACCGGCGATAACTTTTACGATGATGGGTTGACGGGCATCGACGATCCGGCCTTTGAAGAGTCGTTTTCCAAGATCTACACAGCCCCTAGCTTGCAAAAGCAATGGTACAATGTTTTGGGTAATCATGATTATAGGGGTAATGTTGAGGCCCAATTAAGTCCTGTCCTGACTGGATTGGATGGCAGATGGCTTTGCATGAGATCCTTCATAGTTGATGCAGAAATTGCCGAGTTTTTCTTCGTGGACACAACTCCCTTTGCAGACAAATACTTCACTGACCCAGAGGACCATGTCTACGACTGGAGTGGCATATTACCCAGAAATGAGTACCTCTCAAATATTCTCAAGGACGTGGATTCAACGCTAAAAGAATCGAACGCGAAGTGGAAGATCGTGGTTGGTCACCATGGAATTAGAAGTGCTGGACAACATGGTGACACTCCAGAGCTTGTATCACAGCTTCTCCCAATTCTTGAGGCCAACGATGTTGATCTTTACATCAATGGGCACGACCATTGCTTACAACACGTCAGTACTCCCAACAGACCGATTCAATTTCTAACGAGTGGTGGTGGATCGAAGGCATGGAGGGGCGTTGTAATGCCGTACGATCCAAGTGAAATAAAGCTGTATTACGACGGACAGGGTTTCATGTCAGTGCAAATCACTCCAAGCCAAGTAGATATTGCATTCTATGATGTTTTTGGTAATGTGTTGCACAAATGGGGCACATCAAAGGACCTTTACTCTACTACCATGTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

344

Amino Acids

38.49

Weight (kDa)

4.87

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	53 - 262	7.9e-20	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33011 FvH4_4g33011
malus_domestica	MD13G1016000.v1.1 MD16G1013600.v1.1
prunus_persica	Prupe.1G337600_v2.0.a1
pyrus_communis	pycom13g01370
rosa_chinensis	RchiOBHm_Chr4g0442051
rosa_laevigata	RLG00000006048
rosa_multiflora	Rmu_sc0002501.1_g000009
rosa_roxburghii	Rroxscaffold_5G00382970
rosa_rugosa	Rorug04G0338300
rosa_samantha	Rh4AG390000 Rh4BG403400 Rh4CG418500 Rh4DG396600
rosa_wichuraiana	Rw4G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	14, 561
AccII	CGCG	1 cut(s)	647
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	5 cut(s)	157, 305, 462, 850, 872
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	5 cut(s)	60, 374, 596, 802, 875
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	323, 627, 821
AjiI	CACGTC	2 cut(s)	619, 796
AluBI	AGCT	8 cut(s)	69, 78, 112, 159, 357, 715, 727, 895
AluI	AGCT	8 cut(s)	69, 78, 112, 159, 357, 715, 727, 895
AlwI	GGATC	5 cut(s)	157, 305, 462, 850, 872
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	3 cut(s)	315, 414, 744
ApeKI	GCWGC	5 cut(s)	69, 72, 75, 92, 121
AspS9I	GGNCC	3 cut(s)	415, 553, 1006
AsuHPI	GGTGA	2 cut(s)	662, 713
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	2 cut(s)	553, 1006
BaeGI	GKGCMC	2 cut(s)	777, 998
BarI	GAAGNNNNNNTAC	2 cut(s)	711, 743
BbvI	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BccI	CCATC	4 cut(s)	217, 284, 440, 447
BceAI	ACGGC	1 cut(s)	856
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	73
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
BlsI	GCNGC	5 cut(s)	71, 74, 77, 94, 123
BmcAI	AGTACT	1 cut(s)	802
Bme18I	GGWCC	2 cut(s)	553, 1006
BmeT110I	CYCGRG	1 cut(s)	207
BmgBI	CACGTC	2 cut(s)	619, 796
BmgT120I	GGNCC	3 cut(s)	415, 553, 1006
BmsI	GCATC	3 cut(s)	88, 312, 472
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpmI	CTGGAG	2 cut(s)	589, 693
BpuEI	CTTGAG	2 cut(s)	596, 761
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	2 cut(s)	102, 756
BsaJI	CCNNGG	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bse118I	RCCGGY	2 cut(s)	117, 269
Bse1I	ACTGG	2 cut(s)	442, 572
Bse3DI	GCAATG	2 cut(s)	374, 781
Bse8I	GATNNNNATC	2 cut(s)	102, 756
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	2 cut(s)	102, 756
BseMI	GCAATG	2 cut(s)	374, 781
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	442, 572
BseSI	GKGCMC	2 cut(s)	777, 998
BseXI	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	3 cut(s)	317, 416, 746
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	118, 270, 314
BsiWI	CGTACG	1 cut(s)	873
BsmI	GAATGC	2 cut(s)	28, 956
BsnI	GGCC	3 cut(s)	317, 416, 746
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	777, 998
Bsp143I	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	3 cut(s)	317, 416, 746
BspCNI	CTCAG	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	647
BspHI	TCATGA	2 cut(s)	106, 391
BspMAI	CTGCAG	1 cut(s)	77
BspPI	GGATC	5 cut(s)	157, 305, 462, 850, 872
BspQI	GCTCTTC	1 cut(s)	222
BsrDI	GCAATG	2 cut(s)	374, 781
BsrFI	RCCGGY	2 cut(s)	117, 269
BsrI	ACTGG	2 cut(s)	442, 572
BssAI	RCCGGY	2 cut(s)	117, 269
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
BssT1I	CCWWGG	1 cut(s)	673
Bst6I	CTCTTC	3 cut(s)	181, 222, 318
BstAPI	GCANNNNNTGC	2 cut(s)	98, 491
BstC8I	GCNNGC	2 cut(s)	119, 359
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	673
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	647
BstKTI	GATC	9 cut(s)	106, 152, 313, 342, 470, 660, 760, 845, 880
BstMBI	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
BstPI	GGTNACC	1 cut(s)	668
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	2 cut(s)	777, 998
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BstX2I	RGATCY	3 cut(s)	149, 339, 467
BstYI	RGATCY	3 cut(s)	149, 339, 467
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	317, 416, 746
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	673
BtrI	CACGTC	2 cut(s)	619, 796
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	2 cut(s)	540, 930
Cac8I	GCNNGC	2 cut(s)	119, 359
CciI	TCATGA	2 cut(s)	106, 391
Cfr10I	RCCGGY	2 cut(s)	117, 269
Cfr13I	GGNCC	3 cut(s)	415, 553, 1006
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	5 cut(s)	59, 373, 595, 801, 874
CviQI	GTAC	5 cut(s)	59, 373, 595, 801, 874
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	9 cut(s)	105, 151, 312, 341, 469, 659, 759, 844, 879
DpnII	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
Eam1104I	CTCTTC	3 cut(s)	181, 222, 318
EarI	CTCTTC	3 cut(s)	181, 222, 318
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	553, 1006
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	1006
EcoO65I	GGTNACC	1 cut(s)	668
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FblI	GTMKAC	2 cut(s)	14, 561
Fnu4HI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
GsuI	CTGGAG	2 cut(s)	589, 693
HaeIII	GGCC	3 cut(s)	317, 416, 746
HapII	CCGG	3 cut(s)	118, 270, 314
HincII	GTYRAC	2 cut(s)	15, 297
HindII	GTYRAC	2 cut(s)	15, 297
HinfI	GANTC	4 cut(s)	326, 623, 638, 817
HpaII	CCGG	3 cut(s)	118, 270, 314
HphI	GGTGA	2 cut(s)	662, 713
Hpy166II	GTNNAC	4 cut(s)	15, 297, 511, 562
Hpy188I	TCNGA	2 cut(s)	156, 222
Hpy188III	TCNNGA	6 cut(s)	107, 207, 392, 433, 710, 740
Hpy8I	GTNNAC	4 cut(s)	15, 297, 511, 562
Hpy99I	CGWCG	3 cut(s)	149, 311, 908
HpyAV	CCTTC	3 cut(s)	41, 481, 841
HpyCH4IV	ACGT	2 cut(s)	618, 795
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	618, 795
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
LguI	GCTCTTC	1 cut(s)	222
Lsp1109I	GCAGC	5 cut(s)	56, 59, 87, 104, 108
LweI	GCATC	3 cut(s)	88, 312, 472
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	618, 795
MaeIII	GTNAC	2 cut(s)	668, 701
MalI	GATC	9 cut(s)	105, 151, 312, 341, 469, 659, 759, 844, 879
MboI	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
MboII	GAAGA	7 cut(s)	31, 195, 198, 209, 335, 496, 667
MflI	RGATCY	3 cut(s)	149, 339, 467
MhlI	GDGCHC	2 cut(s)	777, 998
MluCI	AATT	6 cut(s)	231, 419, 489, 678, 735, 821
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	151, 225
MnlI	CCTC	7 cut(s)	94, 182, 406, 544, 608, 736, 849
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	2 cut(s)	923, 1028
MspI	CCGG	3 cut(s)	118, 270, 314
Mva1269I	GAATGC	2 cut(s)	28, 956
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
NaeI	GCCGGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
NgoMIV	GCCGGC	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	668, 701
PagI	TCATGA	2 cut(s)	106, 391
PciSI	GCTCTTC	1 cut(s)	222
PctI	GAATGC	2 cut(s)	28, 956
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	3 cut(s)	623, 638, 817
Pfl23II	CGTACG	1 cut(s)	873
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	71, 74, 77, 94, 123
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	1006
Psp5II	RGGWCCY	1 cut(s)	1006
PspEI	GGTNACC	1 cut(s)	668
PspLI	CGTACG	1 cut(s)	873
PspPI	GGNCC	3 cut(s)	415, 553, 1006
PspPPI	RGGWCCY	1 cut(s)	1006
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	3 cut(s)	149, 339, 467
PsyI	GACNNNGTC	1 cut(s)	557
RsaI	GTAC	5 cut(s)	60, 374, 596, 802, 875
RsaNI	GTAC	5 cut(s)	59, 373, 595, 801, 874
RseI	CAYNNNNRTG	2 cut(s)	923, 1028
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
Sau3AI	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
Sau96I	GGNCC	3 cut(s)	415, 553, 1006
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	777, 998
SfaNI	GCATC	3 cut(s)	88, 312, 472
SfcI	CTRYAG	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	553, 1006
SmiMI	CAYNNNNRTG	2 cut(s)	923, 1028
SmlI	CTYRAG	2 cut(s)	611, 740
SmoI	CTYRAG	2 cut(s)	611, 740
Sse9I	AATT	6 cut(s)	231, 419, 489, 678, 735, 821
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	673
TaiI	ACGT	2 cut(s)	621, 798
TaqI	TCGA	5 cut(s)	14, 252, 306, 641, 845
TaqII	GACCGA	1 cut(s)	829
TasI	AATT	6 cut(s)	231, 419, 489, 678, 735, 821
TatI	WGTACW	2 cut(s)	58, 800
TfiI	GAWTC	3 cut(s)	623, 638, 817
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	2 cut(s)	547, 930
TseFI	GTSAC	2 cut(s)	668, 701
TseI	GCWGC	5 cut(s)	69, 72, 75, 92, 121
Tsp45I	GTSAC	2 cut(s)	668, 701
TspDTI	ATGAA	3 cut(s)	35, 463, 907
TspGWI	ACGGA	2 cut(s)	162, 921
TspRI	CASTG	2 cut(s)	547, 930
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	553, 1006
XmiI	GTMKAC	2 cut(s)	14, 561
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.