Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014915

Physical Location & Seq

Genomic Coordinates Forward (+)

61326663 .. 61330316

Gene Structure 3654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG396600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAAAACAAGTCGACCATGAATGCAAACCTTCTGTTCTTCTCTGCTCTGTTTCTTGTACTTGTAAGCTGCTGCAGCTTATCCTCTTGTGCAGCAGATGCAGATCATGAGCTACGCCGGCTGCAACACGCTTCCGCCAAAGCCGACGGATCTCTGAGCTTCTTGGTCGTTGGAGATTGGGGAAGAAGAGGAACTTACAATCAATCCCGAGTTGCTCTTCAGATGGGAGTAATTGGAGAGAAGTTGGATATCGATTTTGTAATATCCACCGGCGATAACTTTTACGATGATGGGTTGACGGGCATCGACGATCCGGCCTTTGAAGAGTCGTTTTCCAAGATCTACACAGCCCCTAGCTTGCAAAAGCAATGGTACAATGTTTTGGGTAATCATGATTATAGGGGTAATGTTGAGGCCCAATTAAGTCCTGTCCTGACTGGATTGGATGGCAGATGGCTTTGCATGAGATCCTTCATAGTTGATGCAGAAATTGCCGAGTTTTTCTTCGTGGACACAACTCCCTTTGCAGACAAATACTTCACTGACCCAGAGGACCATGTCTACGACTGGAGTGGCATATTACCCAGAAATGAGTACCTCTCAAATATTCTCAAGGACGTGGATTCAACGCTAAAAGAATCGAACGCGAAGTGGAAGATCGTGGTTGGTCACCATGGAATTAGAAGTGCTGGACAACATGGTGACACTCCAGAGCTTGTATCACAGCTTCTCCCAATTCTTGAGGCCAACGATGTTGATCTTTACATCAATGGGCACGACCATTGCTTACAACACGTCAGTACTCCCAACAGGTATACTATACTTCATTTGGTTGTTATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

281

Amino Acids

31.45

Weight (kDa)

4.88

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	53 - 262	4.2e-20	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33011 FvH4_4g33011
malus_domestica	MD13G1016000.v1.1 MD16G1013600.v1.1
prunus_persica	Prupe.1G337600_v2.0.a1
pyrus_communis	pycom13g01370
rosa_chinensis	RchiOBHm_Chr4g0442051
rosa_laevigata	RLG00000006048
rosa_multiflora	Rmu_sc0002501.1_g000009
rosa_roxburghii	Rroxscaffold_5G00382970
rosa_rugosa	Rorug04G0338300
rosa_samantha	Rh4AG390000 Rh4BG403400 Rh4CG418500 Rh4DG396600
rosa_wichuraiana	Rw4G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	14, 561, 815
AccII	CGCG	1 cut(s)	647
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	3 cut(s)	157, 305, 462
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	4 cut(s)	60, 374, 596, 802
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	2 cut(s)	323, 627
AjiI	CACGTC	2 cut(s)	619, 796
AluBI	AGCT	7 cut(s)	69, 78, 112, 159, 357, 715, 727
AluI	AGCT	7 cut(s)	69, 78, 112, 159, 357, 715, 727
AlwI	GGATC	3 cut(s)	157, 305, 462
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	3 cut(s)	315, 414, 744
ApeKI	GCWGC	5 cut(s)	69, 72, 75, 92, 121
AseI	ATTAAT	1 cut(s)	840
AspS9I	GGNCC	2 cut(s)	415, 553
AsuHPI	GGTGA	2 cut(s)	662, 713
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	553
BaeGI	GKGCMC	1 cut(s)	777
BarI	GAAGNNNNNNTAC	2 cut(s)	711, 743
BbvI	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BccI	CCATC	4 cut(s)	217, 284, 440, 447
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	73
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
BlsI	GCNGC	5 cut(s)	71, 74, 77, 94, 123
BmcAI	AGTACT	1 cut(s)	802
Bme18I	GGWCC	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	207
BmgBI	CACGTC	2 cut(s)	619, 796
BmgT120I	GGNCC	2 cut(s)	415, 553
BmsI	GCATC	3 cut(s)	88, 312, 472
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpmI	CTGGAG	2 cut(s)	589, 693
BpuEI	CTTGAG	2 cut(s)	596, 761
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	2 cut(s)	102, 756
BsaJI	CCNNGG	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bse118I	RCCGGY	2 cut(s)	117, 269
Bse1I	ACTGG	2 cut(s)	442, 572
Bse3DI	GCAATG	2 cut(s)	374, 781
Bse8I	GATNNNNATC	2 cut(s)	102, 756
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	2 cut(s)	102, 756
BseMI	GCAATG	2 cut(s)	374, 781
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	442, 572
BseSI	GKGCMC	1 cut(s)	777
BseXI	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	3 cut(s)	317, 416, 746
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	118, 270, 314
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	317, 416, 746
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp143I	GATC	7 cut(s)	103, 149, 310, 339, 467, 657, 757
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	3 cut(s)	317, 416, 746
BspCNI	CTCAG	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	647
BspHI	TCATGA	2 cut(s)	106, 391
BspMAI	CTGCAG	1 cut(s)	77
BspPI	GGATC	3 cut(s)	157, 305, 462
BspQI	GCTCTTC	1 cut(s)	222
BsrDI	GCAATG	2 cut(s)	374, 781
BsrFI	RCCGGY	2 cut(s)	117, 269
BsrI	ACTGG	2 cut(s)	442, 572
BssAI	RCCGGY	2 cut(s)	117, 269
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	7 cut(s)	103, 149, 310, 339, 467, 657, 757
BssNAI	GTATAC	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	673
Bst1107I	GTATAC	1 cut(s)	816
Bst6I	CTCTTC	3 cut(s)	181, 222, 318
BstAPI	GCANNNNNTGC	2 cut(s)	98, 491
BstC8I	GCNNGC	2 cut(s)	119, 359
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	673
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	647
BstKTI	GATC	7 cut(s)	106, 152, 313, 342, 470, 660, 760
BstMBI	GATC	7 cut(s)	103, 149, 310, 339, 467, 657, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
BstPI	GGTNACC	1 cut(s)	668
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	777
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BstX2I	RGATCY	3 cut(s)	149, 339, 467
BstYI	RGATCY	3 cut(s)	149, 339, 467
BstZ17I	GTATAC	1 cut(s)	816
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	317, 416, 746
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	673
BtrI	CACGTC	2 cut(s)	619, 796
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	119, 359
CciI	TCATGA	2 cut(s)	106, 391
Cfr10I	RCCGGY	2 cut(s)	117, 269
Cfr13I	GGNCC	2 cut(s)	415, 553
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	4 cut(s)	59, 373, 595, 801
CviAII	CATG	7 cut(s)	19, 107, 392, 463, 557, 674, 698
CviQI	GTAC	4 cut(s)	59, 373, 595, 801
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	7 cut(s)	105, 151, 312, 341, 469, 659, 759
DpnII	GATC	7 cut(s)	103, 149, 310, 339, 467, 657, 757
Eam1104I	CTCTTC	3 cut(s)	181, 222, 318
EarI	CTCTTC	3 cut(s)	181, 222, 318
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	668
EcoO65I	GGTNACC	1 cut(s)	668
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	7 cut(s)	22, 110, 395, 466, 560, 677, 701
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FatI	CATG	7 cut(s)	18, 106, 391, 462, 556, 673, 697
FblI	GTMKAC	3 cut(s)	14, 561, 815
Fnu4HI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
GsuI	CTGGAG	2 cut(s)	589, 693
HaeIII	GGCC	3 cut(s)	317, 416, 746
HapII	CCGG	3 cut(s)	118, 270, 314
Hin1II	CATG	7 cut(s)	22, 110, 395, 466, 560, 677, 701
HincII	GTYRAC	2 cut(s)	15, 297
HindII	GTYRAC	2 cut(s)	15, 297
HinfI	GANTC	3 cut(s)	326, 623, 638
HpaII	CCGG	3 cut(s)	118, 270, 314
HphI	GGTGA	2 cut(s)	662, 713
Hpy166II	GTNNAC	5 cut(s)	15, 297, 511, 562, 816
Hpy188I	TCNGA	2 cut(s)	156, 222
Hpy188III	TCNNGA	6 cut(s)	107, 207, 392, 433, 710, 740
Hpy8I	GTNNAC	5 cut(s)	15, 297, 511, 562, 816
Hpy99I	CGWCG	2 cut(s)	149, 311
HpyAV	CCTTC	2 cut(s)	41, 481
HpyCH4IV	ACGT	2 cut(s)	618, 795
HpyCH4V	TGCA	9 cut(s)	26, 75, 92, 101, 124, 361, 462, 485, 527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	618, 795
Hsp92II	CATG	7 cut(s)	22, 110, 395, 466, 560, 677, 701
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	7 cut(s)	103, 149, 310, 339, 467, 657, 757
LguI	GCTCTTC	1 cut(s)	222
Lsp1109I	GCAGC	5 cut(s)	56, 59, 87, 104, 108
LweI	GCATC	3 cut(s)	88, 312, 472
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	618, 795
MaeIII	GTNAC	2 cut(s)	668, 701
MalI	GATC	7 cut(s)	105, 151, 312, 341, 469, 659, 759
MboI	GATC	7 cut(s)	103, 149, 310, 339, 467, 657, 757
MboII	GAAGA	7 cut(s)	31, 195, 198, 209, 335, 496, 667
MflI	RGATCY	3 cut(s)	149, 339, 467
MhlI	GDGCHC	1 cut(s)	777
MluCI	AATT	6 cut(s)	231, 419, 489, 678, 735, 841
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	151, 225
MnlI	CCTC	6 cut(s)	94, 182, 406, 544, 608, 736
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	3 cut(s)	422, 840, 844
MspI	CCGG	3 cut(s)	118, 270, 314
Mva1269I	GAATGC	1 cut(s)	28
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
NaeI	GCCGGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	7 cut(s)	103, 149, 310, 339, 467, 657, 757
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	7 cut(s)	22, 110, 395, 466, 560, 677, 701
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	668, 701
PacI	TTAATTAA	1 cut(s)	844
PagI	TCATGA	2 cut(s)	106, 391
PciSI	GCTCTTC	1 cut(s)	222
PctI	GAATGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	623, 638
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	71, 74, 77, 94, 123
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PshBI	ATTAAT	1 cut(s)	840
PspEI	GGTNACC	1 cut(s)	668
PspPI	GGNCC	2 cut(s)	415, 553
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	3 cut(s)	149, 339, 467
PsyI	GACNNNGTC	1 cut(s)	557
RsaI	GTAC	4 cut(s)	60, 374, 596, 802
RsaNI	GTAC	4 cut(s)	59, 373, 595, 801
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	422, 840, 844
SatI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
Sau3AI	GATC	7 cut(s)	103, 149, 310, 339, 467, 657, 757
Sau96I	GGNCC	2 cut(s)	415, 553
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	3 cut(s)	88, 312, 472
SfcI	CTRYAG	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	553
SmlI	CTYRAG	2 cut(s)	611, 740
SmoI	CTYRAG	2 cut(s)	611, 740
Sse9I	AATT	6 cut(s)	231, 419, 489, 678, 735, 841
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	673
TaiI	ACGT	2 cut(s)	621, 798
TaqI	TCGA	4 cut(s)	14, 252, 306, 641
TasI	AATT	6 cut(s)	231, 419, 489, 678, 735, 841
TatI	WGTACW	2 cut(s)	58, 800
TfiI	GAWTC	2 cut(s)	623, 638
Tru1I	TTAA	3 cut(s)	422, 840, 844
Tru9I	TTAA	3 cut(s)	422, 840, 844
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	668, 701
TseI	GCWGC	5 cut(s)	69, 72, 75, 92, 121
Tsp45I	GTSAC	2 cut(s)	668, 701
TspDTI	ATGAA	3 cut(s)	35, 463, 815
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	547
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	553
VspI	ATTAAT	1 cut(s)	840
XmiI	GTMKAC	3 cut(s)	14, 561, 815
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.