Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014915

Physical Location & Seq

Genomic Coordinates Forward (+)

1051623 .. 1054883

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1013600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAAAACAAGACCATGATTAGGTCAAGTATTCTGTTTCCTGCTTTAGTAGCTCTATGCACCTTGTCATCTTTTACATCTTCTACAGCGGAGCTACAACGATTCGCGCACGCAGTGAAAGCCGATGGATCTCTCAGGTTTTTGGTGATGGTCACTTGGCCAAAATTCAACAACTACAACCAATCTCAAGTTGCTGATCAGATGGGAATAGTTGGAGAGAAGTTGGATATTGACTTTGTAATATCCACCGGCGATAATTTTTACGATAATGGATTGACGGGCATCGATGATCCACAATTTGAAGACTCCTTTAGCAAAATCTACACAGCACCAAGCTTGCAAAAGCAGTGGTACAGTGTTCTGGGTAATCATGATTATAGAGGTGATGTTGAGGCACAGTTGAGTCCTGTCCTTGGGGAATTGGATAGCAAATGGCTTTGCTTGAGATCCTTCATAGTTGATGCCGAAATTGTGGAATTTTTCTTTGTGGATACAACTCCCTTTGTTGATAAATACTTCACTGATCCAGAGGAGTCAGTCTATGACTGGAGTGGCATATTACCCCGAAATGATTACCTATCAAATCTTCTCAAGGATGTGGATTCAGCCTTAAAAGATTCTACTGCAAAGTGGAGGATTGTGGTTGGTCACCACACGATTAGAACCGCTGGATATCATGGTGAAACCAAGGAGCTTGTAACACAGCTTCTCCCGATTCTTCTGGAAAACAATGTCGATCTTTACATCAATGGCCACGACCATTGCTTAGAACACATAAGCAGTCCCGACAGCCCACTTCAATTTCTAACAAGTGGTGGTGGTTCAAAGGCATGGAGGGGTGAAGTTAGCCCTTACAGTCCAAGCGAAATGAAGTTGTATTACGATGGGCAGGGTTTCATGTCAGTGCAGATCACTCAAACCGAATTGGATATTGCATTCTACGATGTTTTTGGCAATGTCTTGCACAAATGGGGGACATCAAAGCAGCAATACTCTTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

335

Amino Acids

37.77

Weight (kDa)

4.73

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	72 - 255	3.3e-17	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33011 FvH4_4g33011
malus_domestica	MD13G1016000.v1.1 MD16G1013600.v1.1
prunus_persica	Prupe.1G337600_v2.0.a1
pyrus_communis	pycom13g01370
rosa_chinensis	RchiOBHm_Chr4g0442051
rosa_laevigata	RLG00000006048
rosa_multiflora	Rmu_sc0002501.1_g000009
rosa_roxburghii	Rroxscaffold_5G00382970
rosa_rugosa	Rorug04G0338300
rosa_samantha	Rh4AG390000 Rh4BG403400 Rh4CG418500 Rh4DG396600
rosa_wichuraiana	Rw4G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	89, 666
AclWI	GGATC	4 cut(s)	136, 284, 441, 518
AcoI	YGGCCR	2 cut(s)	158, 751
AcsI	RAATTY	2 cut(s)	164, 476
AdeI	CACNNNGTG	1 cut(s)	115
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	21, 413
AgsI	TTSAA	4 cut(s)	169, 302, 800, 825
AluBI	AGCT	5 cut(s)	53, 94, 336, 694, 706
AluI	AGCT	5 cut(s)	53, 94, 336, 694, 706
AlwI	GGATC	4 cut(s)	136, 284, 441, 518
AoxI	GGCC	2 cut(s)	158, 751
ApeKI	GCWGC	1 cut(s)	985
ApoI	RAATTY	2 cut(s)	164, 476
AspLEI	GCGC	1 cut(s)	109
AsuHPI	GGTGA	5 cut(s)	157, 395, 641, 692, 851
BalI	TGGCCA	2 cut(s)	160, 753
BarI	GAAGNNNNNNTAC	4 cut(s)	690, 722, 863, 895
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	997
BccI	CCATC	4 cut(s)	119, 142, 196, 878
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	986
BlsI	GCNGC	1 cut(s)	987
BmsI	GCATC	2 cut(s)	291, 451
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	568
BpuEI	CTTGAG	3 cut(s)	171, 463, 575
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	412, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 413
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	2 cut(s)	760, 961
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	412, 687
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	2 cut(s)	21, 413
BseMI	GCAATG	2 cut(s)	760, 961
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	997
BsgI	GTGCAG	1 cut(s)	926
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	160, 753
BshVI	ATCGAT	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	768, 988
BslI	CCNNNNNNNGG	2 cut(s)	21, 413
BsmFI	GGGAC	2 cut(s)	768, 988
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	2 cut(s)	160, 753
Bsp143I	GATC	7 cut(s)	128, 196, 289, 446, 523, 736, 909
BspACI	CCGC	2 cut(s)	89, 666
BspANI	GGCC	2 cut(s)	160, 753
BspCNI	CTCAG	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	370
BspPI	GGATC	4 cut(s)	136, 284, 441, 518
BsrDI	GCAATG	2 cut(s)	760, 961
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	412, 687
BssMI	GATC	7 cut(s)	128, 196, 289, 446, 523, 736, 909
BssT1I	CCWWGG	2 cut(s)	412, 687
Bst4CI	ACNGT	3 cut(s)	356, 399, 857
BstC8I	GCNNGC	2 cut(s)	111, 338
BstDEI	CTNAG	2 cut(s)	134, 766
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	7 cut(s)	131, 199, 292, 449, 526, 739, 912
BstMBI	GATC	7 cut(s)	128, 196, 289, 446, 523, 736, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 119
BstPI	GGTNACC	1 cut(s)	647
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	997
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	128, 446
BstYI	RGATCY	2 cut(s)	128, 446
Bsu15I	ATCGAT	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	160, 753
BsuTUI	ATCGAT	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	2 cut(s)	120, 353
BtsIMutI	CAGTG	5 cut(s)	120, 353, 361, 519, 909
Cac8I	GCNNGC	2 cut(s)	111, 338
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	352
CspCI	CAANNNNNGTGG	4 cut(s)	329, 364, 743, 778
CviAII	CATG	6 cut(s)	16, 371, 677, 831, 898, 1000
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	134, 766
DpnI	GATC	7 cut(s)	130, 198, 291, 448, 525, 738, 911
DpnII	GATC	7 cut(s)	128, 196, 289, 446, 523, 736, 909
DraIII	CACNNNGTG	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	158, 751
Eco130I	CCWWGG	2 cut(s)	412, 687
Eco32I	GATATC	1 cut(s)	674
Eco91I	GGTNACC	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	647
EcoRV	GATATC	1 cut(s)	674
EcoT14I	CCWWGG	2 cut(s)	412, 687
ErhI	CCWWGG	2 cut(s)	412, 687
FaeI	CATG	6 cut(s)	19, 374, 680, 834, 901, 1003
FaqI	GGGAC	2 cut(s)	768, 988
FatI	CATG	6 cut(s)	15, 370, 676, 830, 897, 999
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	986
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	1 cut(s)	986
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	986
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	160, 753
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	6 cut(s)	19, 374, 680, 834, 901, 1003
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	7 cut(s)	102, 305, 403, 533, 602, 617, 715
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	5 cut(s)	157, 395, 641, 692, 851
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	5 cut(s)	371, 527, 712, 722, 785
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	3 cut(s)	356, 399, 857
HpyCH4V	TGCA	6 cut(s)	60, 340, 626, 907, 935, 964
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 119
HpyF3I	CTNAG	2 cut(s)	134, 766
Hsp92II	CATG	6 cut(s)	19, 374, 680, 834, 901, 1003
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	7 cut(s)	128, 196, 289, 446, 523, 736, 909
LmnI	GCTCC	2 cut(s)	91, 691
Lsp1109I	GCAGC	1 cut(s)	997
LweI	GCATC	2 cut(s)	291, 451
MaeIII	GTNAC	3 cut(s)	151, 647, 697
MalI	GATC	7 cut(s)	130, 198, 291, 448, 525, 738, 911
MboI	GATC	7 cut(s)	128, 196, 289, 446, 523, 736, 909
MboII	GAAGA	4 cut(s)	72, 314, 578, 710
MflI	RGATCY	2 cut(s)	128, 446
MlsI	TGGCCA	2 cut(s)	160, 753
MluCI	AATT	8 cut(s)	164, 256, 296, 419, 468, 476, 800, 923
MluNI	TGGCCA	2 cut(s)	160, 753
MlyI	GAGTC	3 cut(s)	299, 412, 542
MmeI	TCCRAC	2 cut(s)	193, 204
MnlI	CCTC	5 cut(s)	374, 385, 523, 627, 828
Mox20I	TGGCCA	2 cut(s)	160, 753
MscI	TGGCCA	2 cut(s)	160, 753
MseI	TTAA	1 cut(s)	611
MslI	CAYNNNNRTG	1 cut(s)	902
Msp20I	TGGCCA	2 cut(s)	160, 753
MspA1I	CMGCKG	2 cut(s)	89, 668
MspI	CCGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	935
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	50, 119
NdeII	GATC	7 cut(s)	128, 196, 289, 446, 523, 736, 909
NlaIII	CATG	6 cut(s)	19, 374, 680, 834, 901, 1003
NmuCI	GTSAC	2 cut(s)	151, 647
PagI	TCATGA	1 cut(s)	370
PctI	GAATGC	1 cut(s)	935
PfeI	GAWTC	4 cut(s)	102, 602, 617, 715
PkrI	GCNGC	1 cut(s)	987
PleI	GAGTC	3 cut(s)	299, 411, 541
PpsI	GAGTC	3 cut(s)	299, 411, 541
PspEI	GGTNACC	1 cut(s)	647
PsuI	RGATCY	2 cut(s)	128, 446
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	902
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	1 cut(s)	986
Sau3AI	GATC	7 cut(s)	128, 196, 289, 446, 523, 736, 909
SchI	GAGTC	3 cut(s)	299, 412, 542
SfaNI	GCATC	2 cut(s)	291, 451
SfcI	CTRYAG	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	902
SmlI	CTYRAG	3 cut(s)	186, 442, 590
SmoI	CTYRAG	3 cut(s)	186, 442, 590
Sse9I	AATT	8 cut(s)	164, 256, 296, 419, 468, 476, 800, 923
SsiI	CCGC	2 cut(s)	89, 666
StyI	CCWWGG	2 cut(s)	412, 687
TaaI	ACNGT	3 cut(s)	356, 399, 857
TaqI	TCGA	2 cut(s)	285, 735
TasI	AATT	8 cut(s)	164, 256, 296, 419, 468, 476, 800, 923
TfiI	GAWTC	4 cut(s)	102, 602, 617, 715
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	5 cut(s)	120, 353, 361, 526, 909
TseFI	GTSAC	2 cut(s)	151, 647
TseI	GCWGC	1 cut(s)	985
Tsp45I	GTSAC	2 cut(s)	151, 647
TspDTI	ATGAA	4 cut(s)	442, 884, 886, 988
TspRI	CASTG	5 cut(s)	120, 353, 361, 526, 909
XapI	RAATTY	2 cut(s)	164, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.