Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002501.1

Orthogroup ID

OG0014915

Physical Location & Seq

Genomic Coordinates Reverse (-)

52326 .. 56309

Gene Structure 3984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002501.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atggaaaacaagtcgaccatgaatgcaaaccttctgttcttctctgctctgtttcttgtacttgtaagctgctgcagcttatcctcctgtgcagcagatgcagatcatgagctacgccggctgcaacacgcttccgccaaagccgacggatctctgagcttcttggtcgttggagattggggaagaagaggaacttacaatcaatcccgagttgctcttcagatgggattaattggagagaagttggatatcgattttgtaatatccaccggcgataacttttacgatgatggattgacgggcatcgacgatcgggcctttgaagagtcgttttccaagatctacacagcccctagcttgcaaaagcaatggtacaatgttttgggtaatcatgattataggggtaatgttgaggcccaattaagtcctgtcctgactggattggatggcagatggctttgcatgagatccttcatagttgatgcagaaattgcagagtttttcttcgtggacacaactccctttgcagacaaatacttcactgacccagaggacgatgtctacgactggagtggcatattacccagaaatgagtacctctcaaatattctcaaggacgtggattcaacgctaaaagaatcgaacgcgaagtggaagatcgtggtcggtcaccatggaattagaagtgctggacaacatggtgacactccagagctggtatcacagcttctcccaattcttgaggccaacgatgttgatctttacatcaatgggcacgaccattgcttacaacacattagtactcccaacagcccgattcaatttctaacgagtggtggtggatcgaaggcatggaggggcgttgtaatgccgtacgatccaagtgaaataaagctgtattacgacggacagggtttcatgtcagtgcaaatcactccaagccaagtagatattgcattctatgatgtttttgccataacccgaagcatcatccatatcaccatgaccgtggaatccaccattagcgtcttcgccatccacttcaccgcaacgcgtcatcaccaggatgatcgaccatcgccatgccgtcattatcatgttcctgcagctgaaatttcatatctagtatttcgaccggaacctcctgaagggcaagatctcatactcaatttagtgggcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

394

Amino Acids

44.07

Weight (kDa)

4.94

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33011 FvH4_4g33011
malus_domestica	MD13G1016000.v1.1 MD16G1013600.v1.1
prunus_persica	Prupe.1G337600_v2.0.a1
pyrus_communis	pycom13g01370
rosa_chinensis	RchiOBHm_Chr4g0442051
rosa_laevigata	RLG00000006048
rosa_multiflora	Rmu_sc0002501.1_g000009
rosa_roxburghii	Rroxscaffold_5G00382970
rosa_rugosa	Rorug04G0338300
rosa_samantha	Rh4AG390000 Rh4BG403400 Rh4CG418500 Rh4DG396600
rosa_wichuraiana	Rw4G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	14, 561
AccII	CGCG	2 cut(s)	647, 1054
AciI	CCGC	2 cut(s)	135, 1047
AclWI	GGATC	4 cut(s)	157, 462, 850, 872
AcsI	RAATTY	1 cut(s)	1113
AcuI	CTGAAG	2 cut(s)	203, 1167
AfaI	GTAC	5 cut(s)	60, 374, 596, 802, 875
AfiI	CCNNNNNNNGG	1 cut(s)	1148
AflIII	ACRYGT	1 cut(s)	1052
AgsI	TTSAA	3 cut(s)	323, 627, 821
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	1062
AluBI	AGCT	9 cut(s)	69, 78, 112, 159, 357, 715, 727, 895, 1109
AluI	AGCT	9 cut(s)	69, 78, 112, 159, 357, 715, 727, 895, 1109
AlwI	GGATC	4 cut(s)	157, 462, 850, 872
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	3 cut(s)	315, 414, 744
ApeKI	GCWGC	6 cut(s)	69, 72, 75, 92, 121, 1106
ApoI	RAATTY	1 cut(s)	1113
AseI	ATTAAT	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	315, 415
AsuHPI	GGTGA	5 cut(s)	662, 713, 991, 1036, 1052
AvaI	CYCGRG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	777
BarI	GAAGNNNNNNTAC	2 cut(s)	711, 743
BbsI	GAAGAC	1 cut(s)	1021
BbvI	GCAGC	6 cut(s)	56, 59, 87, 104, 108, 1118
BccI	CCATC	6 cut(s)	217, 284, 440, 447, 1043, 1084
BceAI	ACGGC	2 cut(s)	856, 1071
BciT130I	CCWGG	1 cut(s)	1064
BfaI	CTAG	2 cut(s)	354, 1124
BfmI	CTRYAG	2 cut(s)	73, 1104
BglII	AGATCT	2 cut(s)	339, 1156
BisI	GCNGC	6 cut(s)	70, 73, 76, 93, 122, 1107
BlsI	GCNGC	6 cut(s)	71, 74, 77, 94, 123, 1108
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	1 cut(s)	1064
BmeT110I	CYCGRG	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	2 cut(s)	315, 415
BmiI	GGNNCC	1 cut(s)	1140
BmrFI	CCNGG	1 cut(s)	1064
BmsI	GCATC	4 cut(s)	88, 312, 472, 996
BpiI	GAAGAC	1 cut(s)	1021
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpmI	CTGGAG	2 cut(s)	589, 693
BpuEI	CTTGAG	2 cut(s)	596, 761
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	2 cut(s)	102, 756
BsaJI	CCNNGG	2 cut(s)	673, 1008
BsaWI	WCCGGW	1 cut(s)	1135
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	1148
Bse118I	RCCGGY	2 cut(s)	117, 269
Bse1I	ACTGG	2 cut(s)	442, 572
Bse3DI	GCAATG	2 cut(s)	374, 781
Bse8I	GATNNNNATC	2 cut(s)	102, 756
BseBI	CCWGG	1 cut(s)	1064
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	673, 1008
BseGI	GGATG	4 cut(s)	451, 990, 1035, 1072
BseJI	GATNNNNATC	2 cut(s)	102, 756
BseLI	CCNNNNNNNGG	1 cut(s)	1148
BseMI	GCAATG	2 cut(s)	374, 781
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	442, 572
BseSI	GKGCMC	1 cut(s)	777
BseXI	GCAGC	6 cut(s)	56, 59, 87, 104, 108, 1118
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	2 cut(s)	647, 1054
Bsh1285I	CGRYCG	2 cut(s)	313, 1136
BshFI	GGCC	3 cut(s)	317, 416, 746
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	2 cut(s)	313, 1136
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	118, 270, 1136
BsiWI	CGTACG	1 cut(s)	873
BslI	CCNNNNNNNGG	1 cut(s)	1148
BsmI	GAATGC	2 cut(s)	28, 956
BsnI	GGCC	3 cut(s)	317, 416, 746
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	2 cut(s)	135, 1047
BspANI	GGCC	3 cut(s)	317, 416, 746
BspCNI	CTCAG	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	2 cut(s)	647, 1054
BspHI	TCATGA	2 cut(s)	106, 391
BspLI	GGNNCC	1 cut(s)	1140
BspMAI	CTGCAG	2 cut(s)	77, 1108
BspPI	GGATC	4 cut(s)	157, 462, 850, 872
BspQI	GCTCTTC	1 cut(s)	222
BsrDI	GCAATG	2 cut(s)	374, 781
BsrFI	RCCGGY	2 cut(s)	117, 269
BsrI	ACTGG	2 cut(s)	442, 572
BssAI	RCCGGY	2 cut(s)	117, 269
BssECI	CCNNGG	2 cut(s)	673, 1008
BssT1I	CCWWGG	1 cut(s)	673
Bst2UI	CCWGG	1 cut(s)	1064
Bst4CI	ACNGT	1 cut(s)	1009
Bst6I	CTCTTC	3 cut(s)	181, 222, 318
BstAPI	GCANNNNNTGC	2 cut(s)	98, 491
BstC8I	GCNNGC	2 cut(s)	119, 359
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	2 cut(s)	673, 1008
BstEII	GGTNACC	1 cut(s)	668
BstENI	CCTNNNNNAGG	1 cut(s)	1146
BstF5I	GGATG	4 cut(s)	451, 990, 1035, 1072
BstFNI	CGCG	2 cut(s)	647, 1054
BstMCI	CGRYCG	2 cut(s)	313, 1136
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
BstNI	CCWGG	1 cut(s)	1064
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	1062
BstSFI	CTRYAG	2 cut(s)	73, 1104
BstSLI	GKGCMC	1 cut(s)	777
BstUI	CGCG	2 cut(s)	647, 1054
BstV1I	GCAGC	6 cut(s)	56, 59, 87, 104, 108, 1118
BstV2I	GAAGAC	1 cut(s)	1021
BstX2I	RGATCY	4 cut(s)	149, 339, 467, 1156
BstXI	CCANNNNNNTGG	1 cut(s)	1009
BstYI	RGATCY	4 cut(s)	149, 339, 467, 1156
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	317, 416, 746
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	2 cut(s)	673, 1008
BtgZI	GCGATG	1 cut(s)	1062
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	4 cut(s)	451, 990, 1035, 1072
BtsIMutI	CAGTG	2 cut(s)	540, 930
Cac8I	GCNNGC	2 cut(s)	119, 359
CciI	TCATGA	2 cut(s)	106, 391
Cfr10I	RCCGGY	2 cut(s)	117, 269
Cfr13I	GGNCC	2 cut(s)	315, 415
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	2 cut(s)	1015, 1043
Csp6I	GTAC	5 cut(s)	59, 373, 595, 801, 874
CviQI	GTAC	5 cut(s)	59, 373, 595, 801, 874
DdeI	CTNAG	1 cut(s)	155
Eam1104I	CTCTTC	3 cut(s)	181, 222, 318
EarI	CTCTTC	3 cut(s)	181, 222, 318
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	203, 1167
Eco88I	CYCGRG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	668
EcoNI	CCTNNNNNAGG	1 cut(s)	1146
EcoO65I	GGTNACC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	1062
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FblI	GTMKAC	2 cut(s)	14, 561
Fnu4HI	GCNGC	6 cut(s)	70, 73, 76, 93, 122, 1107
FokI	GGATG	4 cut(s)	458, 977, 1022, 1079
Fsp4HI	GCNGC	6 cut(s)	70, 73, 76, 93, 122, 1107
FspBI	CTAG	2 cut(s)	354, 1124
GluI	GCNGC	6 cut(s)	70, 73, 76, 93, 122, 1107
GsuI	CTGGAG	2 cut(s)	589, 693
HaeIII	GGCC	3 cut(s)	317, 416, 746
HapII	CCGG	3 cut(s)	118, 270, 1136
HgaI	GACGC	2 cut(s)	1015, 1043
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	5 cut(s)	326, 623, 638, 817, 1013
HpaII	CCGG	3 cut(s)	118, 270, 1136
HphI	GGTGA	5 cut(s)	662, 713, 991, 1036, 1052
Hpy166II	GTNNAC	3 cut(s)	15, 511, 562
Hpy188I	TCNGA	2 cut(s)	156, 222
Hpy188III	TCNNGA	7 cut(s)	107, 207, 392, 433, 710, 740, 1145
Hpy8I	GTNNAC	3 cut(s)	15, 511, 562
Hpy99I	CGWCG	3 cut(s)	149, 311, 908
HpyAV	CCTTC	4 cut(s)	41, 481, 841, 1142
HpyCH4III	ACNGT	1 cut(s)	1009
HpyCH4IV	ACGT	1 cut(s)	618
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	618
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
LguI	GCTCTTC	1 cut(s)	222
Lsp1109I	GCAGC	6 cut(s)	56, 59, 87, 104, 108, 1118
LweI	GCATC	4 cut(s)	88, 312, 472, 996
MaeI	CTAG	2 cut(s)	354, 1124
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	668, 701
MboII	GAAGA	8 cut(s)	31, 195, 198, 209, 335, 496, 667, 1021
MflI	RGATCY	4 cut(s)	149, 339, 467, 1156
MhlI	GDGCHC	1 cut(s)	777
MluCI	AATT	8 cut(s)	231, 419, 489, 678, 735, 821, 1113, 1168
MluI	ACGCGT	1 cut(s)	1052
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	151, 225
MnlI	CCTC	8 cut(s)	94, 182, 406, 544, 608, 736, 849, 1152
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	2 cut(s)	230, 422
MslI	CAYNNNNRTG	5 cut(s)	923, 1007, 1065, 1081, 1095
MspA1I	CMGCKG	1 cut(s)	1109
MspI	CCGG	3 cut(s)	118, 270, 1136
MspR9I	CCNGG	1 cut(s)	1064
Mva1269I	GAATGC	2 cut(s)	28, 956
MvaI	CCWGG	1 cut(s)	1064
MvnI	CGCG	2 cut(s)	647, 1054
MwoI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
NaeI	GCCGGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	673
NgoMIV	GCCGGC	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	1140
NmuCI	GTSAC	2 cut(s)	668, 701
PagI	TCATGA	2 cut(s)	106, 391
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PctI	GAATGC	2 cut(s)	28, 956
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	4 cut(s)	623, 638, 817, 1013
Pfl23II	CGTACG	1 cut(s)	873
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	6 cut(s)	71, 74, 77, 94, 123, 1108
Ple19I	CGATCG	1 cut(s)	313
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PshBI	ATTAAT	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	1062
PspEI	GGTNACC	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	1062
PspLI	CGTACG	1 cut(s)	873
PspN4I	GGNNCC	1 cut(s)	1140
PspPI	GGNCC	2 cut(s)	315, 415
PstI	CTGCAG	2 cut(s)	77, 1108
PsuI	RGATCY	4 cut(s)	149, 339, 467, 1156
PsyI	GACNNNGTC	1 cut(s)	557
PvuI	CGATCG	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	1109
RsaI	GTAC	5 cut(s)	60, 374, 596, 802, 875
RsaNI	GTAC	5 cut(s)	59, 373, 595, 801, 874
RseI	CAYNNNNRTG	5 cut(s)	923, 1007, 1065, 1081, 1095
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	230, 422
SatI	GCNGC	6 cut(s)	70, 73, 76, 93, 122, 1107
Sau96I	GGNCC	2 cut(s)	315, 415
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	1064
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	4 cut(s)	88, 312, 472, 996
SfcI	CTRYAG	2 cut(s)	73, 1104
SgrAI	CRCCGGYG	1 cut(s)	269
SmiMI	CAYNNNNRTG	5 cut(s)	923, 1007, 1065, 1081, 1095
SmlI	CTYRAG	2 cut(s)	611, 740
SmoI	CTYRAG	2 cut(s)	611, 740
Sse9I	AATT	8 cut(s)	231, 419, 489, 678, 735, 821, 1113, 1168
SsiI	CCGC	2 cut(s)	135, 1047
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	2 cut(s)	354, 1124
StyD4I	CCNGG	1 cut(s)	1062
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	1 cut(s)	1009
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	7 cut(s)	14, 252, 306, 641, 845, 1072, 1132
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	8 cut(s)	231, 419, 489, 678, 735, 821, 1113, 1168
TatI	WGTACW	2 cut(s)	58, 800
TfiI	GAWTC	4 cut(s)	623, 638, 817, 1013
Tru1I	TTAA	2 cut(s)	230, 422
Tru9I	TTAA	2 cut(s)	230, 422
TscAI	CASTG	2 cut(s)	547, 930
TseFI	GTSAC	2 cut(s)	668, 701
TseI	GCWGC	6 cut(s)	69, 72, 75, 92, 121, 1106
Tsp45I	GTSAC	2 cut(s)	668, 701
TspDTI	ATGAA	4 cut(s)	35, 463, 907, 1107
TspGWI	ACGGA	2 cut(s)	162, 921
TspRI	CASTG	2 cut(s)	547, 930
Tth111I	GACNNNGTC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	1146
XapI	RAATTY	1 cut(s)	1113
XmiI	GTMKAC	2 cut(s)	14, 561
XspI	CTAG	2 cut(s)	354, 1124
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.