Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015612

Physical Location & Seq

Genomic Coordinates Reverse (-)

32392495 .. 32393598

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCTTGGAATCAAGCTCAAATCAAGCTCCACCATCCTCAATCTCGGTTTCTGAATAGTGAATATCAGAAGCAATCGATCCCACCATCTTCATCTTCTGGCAATAAAATTAGTCCAGCAATTCTGTTCATCATAATTGTTCTAGCTGTTGTGTGTTTCGTATCCGGAATCCTTCACTTGCTTGTTAGATTTCTCACCAAGCATAGATCTTCATCGATTTCTGAATCCAATAGATACCCGGAAATGTCTGGGTCTGGAGTTCTCCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCTGGATTAGAGCAAGCTTTCATTGATGCTCTTCCTGTGTTCCTTTATAAAGAGTTGAAGGTCCTAAATGAACCGTTCGATTGTCCTGTTTGTTTGTGTGAGTTTACTGAAAAGGACCAGCTGAGATTGCTTCCATTATGTAGTCATGCTTTTCACATTGATTGCATAGATACATGGTTACTGTCTAATTCTACATGCCCTCTTTGTAGAGGGACACTACATACAGAAGGGATTGCCATTGAGAACCCGATTTTTGATTTCGATGATTTGAGGGAAGAGGAGGGTTTTTCAGAGAATGGAGGAAATGGGGGTATGATTTCTGGTCAAAAGTCTGCAGAGAATGAGATTGAAAAGAGAGTGTTTTCTGTGAGACTTGGAAAGTTTAGAAGTACTACTACTACTACTACAAATGTGGAAGAAGATGAAGGAAGAGGTGTGGAGAGAGTAGAGGGAGAGACTAGTAGTAGTAAGTTGGATGCAAGGAGATGTTACTCAATGGGATCATACCAATATGTTGTTGCTGATTTAGAGGTTCAAGTTGCTCTGAGGCCCAAAAGATCAAGTGGTAATGGTGAAAGTATGAGGATTGTGAAAGGAAGAGTTGGGCAAAATGGGAATTCAAACAATGATAGTGATAGTGAGGGGAAAAAAATTGGAGGTAAAGGTGAAAGCTTTTCTGTTTCCAAAATTTGGCTATGGCCTAAAAAGGGCAATTTTCCAACTTCTGCAGAAACCCAAATGGCCACTTCTTCCTCAGCTACTGTGGGTTTGCCATGGAGTGGTAATAGATCTCAGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

368

Amino Acids

40.69

Weight (kDa)

6.18

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	125 - 170	2e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	127 - 170	5.6e-14	Ring finger domain
zf-RING_11	PF17123	127 - 156	2.6e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34840
malus_domestica	MD13G1089200.v1.1 MD16G1089400.v1.1
prunus_persica	Prupe.1G256600_v2.0.a1
pyrus_communis	pycom16g07650
rosa_chinensis	RchiOBHm_Chr4g0444181
rosa_laevigata	RLG00000005849
rosa_multiflora	Rmu_sc0001001.1_g000021 Rmu_sc0017354.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384770
rosa_rugosa	Rorug04G0350700
rosa_samantha	Rh4AG411500 Rh4BG422900 Rh4CG437200 Rh4DG418200
rosa_wichuraiana	Rw4G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AccB7I	CCANNNNNTGG	2 cut(s)	990, 1079
AccIII	TCCGGA	1 cut(s)	164
AclWI	GGATC	2 cut(s)	73, 808
AcoI	YGGCCR	1 cut(s)	1041
AcsI	RAATTY	2 cut(s)	916, 987
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	3 cut(s)	990, 1007, 1079
AgsI	TTSAA	4 cut(s)	358, 650, 836, 921
AhlI	ACTAGT	1 cut(s)	758
AluBI	AGCT	8 cut(s)	17, 28, 146, 283, 317, 421, 972, 1058
AluI	AGCT	8 cut(s)	17, 28, 146, 283, 317, 421, 972, 1058
Alw26I	GTCTC	3 cut(s)	262, 664, 749
AlwI	GGATC	2 cut(s)	73, 808
AlwNI	CAGNNNCTG	1 cut(s)	1061
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	3 cut(s)	848, 998, 1041
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	916, 987
AspS9I	GGNCC	3 cut(s)	361, 415, 849
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	187, 884, 977
AvaII	GGWCC	2 cut(s)	361, 415
BalI	TGGCCA	1 cut(s)	1043
BarI	GAAGNNNNNNTAC	2 cut(s)	679, 711
BbvCI	CCTCAGC	1 cut(s)	1054
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	3 cut(s)	42, 94, 297
BciVI	GTATCC	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	3 cut(s)	262, 664, 749
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	2 cut(s)	143, 759
BfmI	CTRYAG	2 cut(s)	633, 1026
BfuI	GTATCC	1 cut(s)	172
BglII	AGATCT	2 cut(s)	206, 1088
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmcAI	AGTACT	1 cut(s)	691
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	361, 415
BmgT120I	GGNCC	3 cut(s)	361, 415, 849
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	316, 766
BpmI	CTGGAG	2 cut(s)	248, 276
Bpu10I	CCTNAGC	1 cut(s)	1054
BpuMI	CCSGG	1 cut(s)	239
Bsa29I	ATCGAT	2 cut(s)	77, 215
BsaBI	GATNNNNATC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	1073
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	3 cut(s)	990, 1007, 1079
Bse8I	GATNNNNATC	1 cut(s)	211
BseAI	TCCGGA	1 cut(s)	164
BseCI	ATCGAT	2 cut(s)	77, 215
BseDI	CCNNGG	1 cut(s)	1073
BseGI	GGATG	2 cut(s)	34, 781
BseJI	GATNNNNATC	1 cut(s)	211
BseLI	CCNNNNNNNGG	3 cut(s)	990, 1007, 1079
BseMII	CTCAG	3 cut(s)	413, 836, 1068
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	3 cut(s)	850, 1000, 1043
BshVI	ATCGAT	2 cut(s)	77, 215
BsiSI	CCGG	2 cut(s)	165, 239
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	3 cut(s)	990, 1007, 1079
BsmAI	GTCTC	3 cut(s)	262, 664, 749
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	3 cut(s)	850, 1000, 1043
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	5 cut(s)	78, 206, 800, 857, 1088
Bsp19I	CCATGG	1 cut(s)	1073
BspANI	GGCC	3 cut(s)	850, 1000, 1043
BspCNI	CTCAG	3 cut(s)	414, 837, 1067
BspDI	ATCGAT	2 cut(s)	77, 215
BspEI	TCCGGA	1 cut(s)	164
BspHI	TCATGA	1 cut(s)	295
BspMAI	CTGCAG	2 cut(s)	637, 1030
BspPI	GGATC	2 cut(s)	73, 808
BspQI	GCTCTTC	2 cut(s)	290, 336
BssECI	CCNNGG	1 cut(s)	1073
BssMI	GATC	5 cut(s)	78, 206, 800, 857, 1088
BssT1I	CCWWGG	1 cut(s)	1073
Bst4CI	ACNGT	4 cut(s)	273, 375, 483, 1063
Bst6I	CTCTTC	5 cut(s)	290, 336, 570, 724, 892
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	4 cut(s)	422, 845, 1054, 1092
BstDSI	CCRYGG	1 cut(s)	1073
BstF5I	GGATG	2 cut(s)	34, 781
BstKTI	GATC	5 cut(s)	81, 209, 803, 860, 1091
BstMAI	GTCTC	3 cut(s)	262, 664, 749
BstMBI	GATC	5 cut(s)	78, 206, 800, 857, 1088
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	2 cut(s)	633, 1026
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	206, 1088
BstYI	RGATCY	2 cut(s)	206, 1088
Bsu15I	ATCGAT	2 cut(s)	77, 215
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	850, 1000, 1043
BsuTUI	ATCGAT	2 cut(s)	77, 215
BtgI	CCRYGG	1 cut(s)	1073
BtsCI	GGATG	2 cut(s)	34, 781
Cac8I	GCNNGC	1 cut(s)	315
CaiI	CAGNNNCTG	1 cut(s)	1061
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	3 cut(s)	361, 415, 849
ClaI	ATCGAT	2 cut(s)	77, 215
Csp6I	GTAC	1 cut(s)	690
CviAII	CATG	6 cut(s)	296, 446, 474, 495, 1074, 1101
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	4 cut(s)	422, 845, 1054, 1092
DpnI	GATC	5 cut(s)	80, 208, 802, 859, 1090
DpnII	GATC	5 cut(s)	78, 206, 800, 857, 1088
EaeI	YGGCCR	1 cut(s)	1041
Eam1104I	CTCTTC	5 cut(s)	290, 336, 570, 724, 892
EarI	CTCTTC	5 cut(s)	290, 336, 570, 724, 892
Eco130I	CCWWGG	1 cut(s)	1073
Eco47I	GGWCC	2 cut(s)	361, 415
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	916
EcoT14I	CCWWGG	1 cut(s)	1073
ErhI	CCWWGG	1 cut(s)	1073
FaeI	CATG	6 cut(s)	299, 449, 477, 498, 1077, 1104
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	6 cut(s)	295, 445, 473, 494, 1073, 1100
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	21, 788
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	143, 759
GluI	GCNGC	1 cut(s)	281
GsuI	CTGGAG	2 cut(s)	248, 276
HaeIII	GGCC	3 cut(s)	850, 1000, 1043
HapII	CCGG	2 cut(s)	165, 239
Hin1II	CATG	6 cut(s)	299, 449, 477, 498, 1077, 1104
HindIII	AAGCTT	2 cut(s)	315, 970
HinfI	GANTC	4 cut(s)	10, 168, 224, 299
HpaII	CCGG	2 cut(s)	165, 239
HphI	GGTGA	3 cut(s)	187, 884, 977
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	5 cut(s)	54, 69, 223, 592, 846
Hpy188III	TCNNGA	6 cut(s)	165, 255, 265, 296, 303, 1094
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	4 cut(s)	182, 352, 521, 719
HpyCH4III	ACNGT	4 cut(s)	273, 375, 483, 1063
HpyCH4V	TGCA	4 cut(s)	465, 635, 779, 1028
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	4 cut(s)	422, 845, 1054, 1092
Hsp92II	CATG	6 cut(s)	299, 449, 477, 498, 1077, 1104
Kpn2I	TCCGGA	1 cut(s)	164
Kzo9I	GATC	5 cut(s)	78, 206, 800, 857, 1088
LguI	GCTCTTC	2 cut(s)	290, 336
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	316, 766
MaeI	CTAG	2 cut(s)	143, 759
MaeIII	GTNAC	3 cut(s)	273, 477, 788
MalI	GATC	5 cut(s)	80, 208, 802, 859, 1090
MboI	GATC	5 cut(s)	78, 206, 800, 857, 1088
MflI	RGATCY	2 cut(s)	206, 1088
MlsI	TGGCCA	1 cut(s)	1043
MluCI	AATT	8 cut(s)	108, 120, 135, 487, 916, 951, 987, 1012
MluNI	TGGCCA	1 cut(s)	1043
MmeI	TCCRAC	2 cut(s)	753, 1043
Mox20I	TGGCCA	1 cut(s)	1043
MroI	TCCGGA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	1043
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	1043
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	2 cut(s)	165, 239
MspR9I	CCNGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	1073
NdeII	GATC	5 cut(s)	78, 206, 800, 857, 1088
NlaIII	CATG	6 cut(s)	299, 449, 477, 498, 1077, 1104
NspI	RCATGY	1 cut(s)	498
PagI	TCATGA	1 cut(s)	295
PciSI	GCTCTTC	2 cut(s)	290, 336
PfeI	GAWTC	4 cut(s)	10, 168, 224, 299
PflMI	CCANNNNNTGG	2 cut(s)	990, 1079
PkrI	GCNGC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	361
PspPI	GGNCC	3 cut(s)	361, 415, 849
PspPPI	RGGWCCY	1 cut(s)	361
PstI	CTGCAG	2 cut(s)	637, 1030
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	2 cut(s)	206, 1088
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	2 cut(s)	290, 336
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	5 cut(s)	78, 206, 800, 857, 1088
Sau96I	GGNCC	3 cut(s)	361, 415, 849
ScaI	AGTACT	1 cut(s)	691
ScrFI	CCNGG	1 cut(s)	239
SfaNI	GCATC	2 cut(s)	316, 766
SfcI	CTRYAG	2 cut(s)	633, 1026
SinI	GGWCC	2 cut(s)	361, 415
SmiMI	CAYNNNNRTG	1 cut(s)	294
SpeI	ACTAGT	1 cut(s)	758
Sse9I	AATT	8 cut(s)	108, 120, 135, 487, 916, 951, 987, 1012
SspMI	CTAG	2 cut(s)	143, 759
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	1073
TaaI	ACNGT	4 cut(s)	273, 375, 483, 1063
TaqI	TCGA	4 cut(s)	77, 215, 378, 561
TasI	AATT	8 cut(s)	108, 120, 135, 487, 916, 951, 987, 1012
TatI	WGTACW	1 cut(s)	689
TfiI	GAWTC	4 cut(s)	10, 168, 224, 299
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	7 cut(s)	81, 118, 201, 284, 310, 384, 738
Van91I	CCANNNNNTGG	2 cut(s)	990, 1079
VpaK11BI	GGWCC	2 cut(s)	361, 415
XapI	RAATTY	2 cut(s)	916, 987
XceI	RCATGY	1 cut(s)	498
XspI	CTAG	2 cut(s)	143, 759
ZrmI	AGTACT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.