Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015612

Physical Location & Seq

Genomic Coordinates Reverse (-)

71042992 .. 71045035

Gene Structure 2044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG411500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCTGGGTCTGGAGTTCTCCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCTGGATTAGATCAGGCTTTCATTGATGCTCTTCCTGTGTTCCTTTATAAAGAGTTGAAGGGTCTGAATGAGCCATTTGATTGTCCAGTTTGTCTGTGTGAGTTTTCTGAAAAGGACCAGCTGAGATTGCTTCCATTATGTAGTCATGCTTTTCACATTGATTGCATAGACACATGGTTACTGTCTAATTCTACTTGCCCTCTTTGTAGAGGGACACTATACACACCAGGGATAGCCATTGAGAACCCGGTTTTTGATTTCGATGATTCGAGGGAAGAGGAAGGTTTTTCAGGGAATGGAGGAAATGGGGGTCTGATTTCTGGTCAAAAGTCTGCAGAGAATGAGATTGAAAAGAGAGTGTTTTCTGTGAGACTTGGAAAGTTCAGAAGTACTACTACGACAAATGTCGAAGGAGATGAAGGAAGAGGTGTGGAGAGAATAGAGGGAGAGACTAGTAGTAGTAATTTGGATGCAAGGAGATGTTACTCAATGGGATCATACCAATATGTGGTAGCTGATTTGGAGGTTCAAGTTGCTCTGAGGCCCAAAAGATCAGGTGGTAATGGTGATAGTATGAGGATTGTGAGAGGGAGGGTGGGGCAAAATGGGAATTCCAACAATGATAGTGATACTGAGGGGAAAAAAATTGGAGGTAAAGGTGAAAGCTTTTCTGTTTCTAAAATCTGGCTATGGCCTAAAAAGGGCAAATTTCCAAGTTCTGCAGAAACCCAAATGGCTGCTACTTCCTCAGCTACCGTGGGTTTGCCATGGAGTGATAATAGATCTCAGGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

284

Amino Acids

31.09

Weight (kDa)

5.27

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	45 - 89	1.6e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	46 - 89	3.1e-14	Ring finger domain
zf-RING_11	PF17123	46 - 75	4.6e-09	RING-like zinc finger
zf-C3HC4	PF00097	47 - 88	5.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34840
malus_domestica	MD13G1089200.v1.1 MD16G1089400.v1.1
prunus_persica	Prupe.1G256600_v2.0.a1
pyrus_communis	pycom16g07650
rosa_chinensis	RchiOBHm_Chr4g0444181
rosa_laevigata	RLG00000005849
rosa_multiflora	Rmu_sc0001001.1_g000021 Rmu_sc0017354.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384770
rosa_rugosa	Rorug04G0350700
rosa_samantha	Rh4AG411500 Rh4BG422900 Rh4CG437200 Rh4DG418200
rosa_wichuraiana	Rw4G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccB7I	CCANNNNNTGG	1 cut(s)	565
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	2 cut(s)	667, 764
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	2 cut(s)	565, 758
AgsI	TTSAA	3 cut(s)	115, 407, 587
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	5 cut(s)	40, 178, 572, 723, 809
AluI	AGCT	5 cut(s)	40, 178, 572, 723, 809
Alw26I	GTCTC	3 cut(s)	19, 421, 500
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	2 cut(s)	599, 749
ApeKI	GCWGC	2 cut(s)	37, 794
ApoI	RAATTY	2 cut(s)	667, 764
AspS9I	GGNCC	2 cut(s)	172, 600
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	635, 728
AvaII	GGWCC	1 cut(s)	172
BarI	GAAGNNNNNNTAC	2 cut(s)	436, 468
BbvCI	CCTCAGC	1 cut(s)	805
BbvI	GCAGC	2 cut(s)	49, 781
BccI	CCATC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	3 cut(s)	19, 421, 500
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	2 cut(s)	390, 777
BfuI	GTATCC	1 cut(s)	841
BglII	AGATCT	1 cut(s)	839
BisI	GCNGC	2 cut(s)	38, 795
BlsI	GCNGC	2 cut(s)	39, 796
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	285, 305
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	172, 600
BmrFI	CCNGG	2 cut(s)	285, 305
BmsI	GCATC	2 cut(s)	73, 517
BoxI	GACNNNNGTC	1 cut(s)	461
BpmI	CTGGAG	2 cut(s)	5, 33
Bpu10I	CCTNAGC	1 cut(s)	805
BpuMI	CCSGG	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	284, 813, 824
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 758
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	284, 813, 824
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	2 cut(s)	565, 758
BseMII	CTCAG	4 cut(s)	170, 587, 681, 819
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	49, 781
BshFI	GGCC	2 cut(s)	601, 751
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	565, 758
BsmAI	GTCTC	3 cut(s)	19, 421, 500
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	601, 751
Bsp143I	GATC	4 cut(s)	67, 551, 608, 839
Bsp19I	CCATGG	1 cut(s)	824
BspANI	GGCC	2 cut(s)	601, 751
BspCNI	CTCAG	4 cut(s)	171, 588, 682, 818
BspHI	TCATGA	1 cut(s)	52
BspMAI	CTGCAG	2 cut(s)	394, 781
BspPI	GGATC	1 cut(s)	559
BspQI	GCTCTTC	2 cut(s)	47, 93
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	284, 813, 824
BssMI	GATC	4 cut(s)	67, 551, 608, 839
BssT1I	CCWWGG	1 cut(s)	824
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	30, 240, 814
Bst6I	CTCTTC	4 cut(s)	47, 93, 327, 475
BstDEI	CTNAG	5 cut(s)	179, 596, 690, 805, 843
BstDSI	CCRYGG	2 cut(s)	813, 824
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	4 cut(s)	70, 554, 611, 842
BstMAI	GTCTC	3 cut(s)	19, 421, 500
BstMBI	GATC	4 cut(s)	67, 551, 608, 839
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	285
BstPAI	GACNNNNGTC	1 cut(s)	461
BstSCI	CCNGG	2 cut(s)	283, 303
BstSFI	CTRYAG	2 cut(s)	390, 777
BstV1I	GCAGC	2 cut(s)	49, 781
BstX2I	RGATCY	1 cut(s)	839
BstYI	RGATCY	1 cut(s)	839
BsuI	GTATCC	1 cut(s)	841
BsuRI	GGCC	2 cut(s)	601, 751
BtgI	CCRYGG	2 cut(s)	813, 824
BtsCI	GGATG	1 cut(s)	532
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	172, 600
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	5 cut(s)	53, 203, 231, 825, 852
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	5 cut(s)	179, 596, 690, 805, 843
DpnI	GATC	4 cut(s)	69, 553, 610, 841
DpnII	GATC	4 cut(s)	67, 551, 608, 839
Eam1104I	CTCTTC	4 cut(s)	47, 93, 327, 475
EarI	CTCTTC	4 cut(s)	47, 93, 327, 475
Eco130I	CCWWGG	1 cut(s)	824
Eco47I	GGWCC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	824
ErhI	CCWWGG	1 cut(s)	824
FaeI	CATG	5 cut(s)	56, 206, 234, 828, 855
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	5 cut(s)	52, 202, 230, 824, 851
Fnu4HI	GCNGC	2 cut(s)	38, 795
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	38, 795
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	2 cut(s)	38, 795
GsuI	CTGGAG	2 cut(s)	5, 33
HaeIII	GGCC	2 cut(s)	601, 751
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	5 cut(s)	56, 206, 234, 828, 855
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	2 cut(s)	56, 323
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	635, 728
Hpy188I	TCNGA	5 cut(s)	123, 166, 372, 443, 597
Hpy188III	TCNNGA	5 cut(s)	12, 22, 53, 60, 845
HpyAV	CCTTC	4 cut(s)	109, 332, 461, 470
HpyCH4III	ACNGT	3 cut(s)	30, 240, 814
HpyCH4V	TGCA	4 cut(s)	222, 392, 530, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	5 cut(s)	179, 596, 690, 805, 843
Hsp92II	CATG	5 cut(s)	56, 206, 234, 828, 855
Kzo9I	GATC	4 cut(s)	67, 551, 608, 839
LguI	GCTCTTC	2 cut(s)	47, 93
Lsp1109I	GCAGC	2 cut(s)	49, 781
LweI	GCATC	2 cut(s)	73, 517
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	30, 234, 539
MalI	GATC	4 cut(s)	69, 553, 610, 841
MboI	GATC	4 cut(s)	67, 551, 608, 839
MboII	GAAGA	5 cut(s)	34, 41, 80, 344, 492
MflI	RGATCY	1 cut(s)	839
MluCI	AATT	5 cut(s)	244, 520, 667, 702, 764
MmeI	TCCRAC	1 cut(s)	696
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	285, 305
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	824
NdeII	GATC	4 cut(s)	67, 551, 608, 839
NlaIII	CATG	5 cut(s)	56, 206, 234, 828, 855
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	2 cut(s)	47, 93
PfeI	GAWTC	2 cut(s)	56, 323
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	39, 796
PshAI	GACNNNNGTC	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspPI	GGNCC	2 cut(s)	172, 600
PstI	CTGCAG	2 cut(s)	394, 781
PsuI	RGATCY	1 cut(s)	839
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	51
SapI	GCTCTTC	2 cut(s)	47, 93
SatI	GCNGC	2 cut(s)	38, 795
Sau3AI	GATC	4 cut(s)	67, 551, 608, 839
Sau96I	GGNCC	2 cut(s)	172, 600
ScaI	AGTACT	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	285, 305
SfaNI	GCATC	2 cut(s)	73, 517
SfcI	CTRYAG	2 cut(s)	390, 777
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	51
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	5 cut(s)	244, 520, 667, 702, 764
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	283, 303
StyI	CCWWGG	1 cut(s)	824
TaaI	ACNGT	3 cut(s)	30, 240, 814
TaqI	TCGA	3 cut(s)	318, 326, 465
TasI	AATT	5 cut(s)	244, 520, 667, 702, 764
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	56, 323
TseI	GCWGC	2 cut(s)	37, 794
TspDTI	ATGAA	3 cut(s)	41, 67, 489
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	2 cut(s)	667, 764
XspI	CTAG	1 cut(s)	510
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.