Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015612

Physical Location & Seq

Genomic Coordinates Reverse (-)

26680084 .. 26681908

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G256600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTGAATTTAGTGTGCCACTATCCTAAAATGTCTTTGAATCAAGCTCAAACCAGGCAAAGAAATGATTTTCTGACCAGCTATCCTGGCTCTCGTTTGCTTTCCTCTTCTCTTTCATCTTCTTCTTCTTCTCCTTCACTGCCATTACCGTACAATAGTGACTACCAAAGACACTCAAACCCATCATCATCCTCTGGTAGTAAAATAAGCCCATCAGTTCTTTTTATCATAATTATTCTAGCTGTTATATTTTTTGTATCTGGTATCCTTCACTTGCTTGTTAGATTTCTCACAAAGCATAGATCTTCGTCAGCATCCGAATCTAACAGATACCCGGAACTCTCTGGGTCTGAAGTTTATCAGAGACAATTACAGCAACTCTTCCATCTTCATGATTCTGGCTTAGATCAAGCTTTTATAGACGCTCTTCCTGTATTCCTTTATAAAGAGATAAAGGCGAGAGAACCATTTGATTGTCCAGTTTGTCTGTGTGAGTTTTCTGAAAAGGACCAGTTGAGATTGCTCCCCATATGTAGTCATGCTTTCCACATTGATTGCATTGACACATGGTTACTGTCTAATTCAACTTGCCCGCTTTGTAGAGGGACCCTGTACACGCCAGGGATTGCCATTGAAAACCCAGTCTTTGATTTTGATGATCTAAGGGAAGAAGATGGTTCTTTGGGCAATGAAGGAAGCGGAGTTCTTACTGGCCAAAAGTCTGCAGATAATGAAAATGGTGGTGAGAAAAAGGTATTTTCTGTGAGACTTGGTAAATTCAGAAGCACAAATGATGAGGGAGATGGAGGTGGAGGAGCAGCAGTGGAGAGAGCAGAGGGAGAGACTAGCAGTAGTAGTTTGGATGCAAGGAGATGTTACTCAATGGGATCATACCAATATGTGGTTGCTGATTTAGAGTTGCAAGTGGCTTTAAGGCCCAAAAGAGCAGCTGCTGCTGCTGGAAGTGGTGATAGTGTGAGGCTTGTGAAAGGGAGAGCTGGACAAAATGGGAATTCCCACTGTGATGGTGATGCAGAGGGGAAAAAAATTAACAGTGGAAGTAAAGGTGAAAGCTTTTCTGTTTCCAAAATTTGGCTATGGCCTAAGAAGGGTAAATTTCCAAATTCTTCAGAAACCCATATGGGCGCTTCCTCTGTTACTGTGGGTTTGCCATGGAGTGATAGATCTCAGGTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

400

Amino Acids

43.43

Weight (kDa)

6.56

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34840
malus_domestica	MD13G1089200.v1.1 MD16G1089400.v1.1
prunus_persica	Prupe.1G256600_v2.0.a1
pyrus_communis	pycom16g07650
rosa_chinensis	RchiOBHm_Chr4g0444181
rosa_laevigata	RLG00000005849
rosa_multiflora	Rmu_sc0001001.1_g000021 Rmu_sc0017354.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384770
rosa_rugosa	Rorug04G0350700
rosa_samantha	Rh4AG411500 Rh4BG422900 Rh4CG437200 Rh4DG418200
rosa_wichuraiana	Rw4G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AccB7I	CCANNNNNTGG	2 cut(s)	901, 1092
AciI	CCGC	2 cut(s)	593, 699
AclWI	GGATC	1 cut(s)	895
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	6 cut(s)	7, 776, 1012, 1089, 1115, 1123
AcuI	CTGAAG	2 cut(s)	372, 1113
AfaI	GTAC	2 cut(s)	152, 614
AfiI	CCNNNNNNNGG	3 cut(s)	901, 1092, 1109
AgsI	TTSAA	3 cut(s)	40, 585, 635
AjnI	CCWGG	3 cut(s)	53, 85, 619
AloI	GAACNNNNNNTCC	2 cut(s)	687, 719
AluBI	AGCT	7 cut(s)	47, 81, 242, 413, 950, 998, 1074
AluI	AGCT	7 cut(s)	47, 81, 242, 413, 950, 998, 1074
Alw26I	GTCTC	3 cut(s)	358, 760, 836
AlwI	GGATC	1 cut(s)	895
AlwNI	CAGNNNCTG	1 cut(s)	953
AoxI	GGCC	3 cut(s)	712, 935, 1100
ApeKI	GCWGC	5 cut(s)	818, 947, 950, 953, 956
ApoI	RAATTY	6 cut(s)	7, 776, 1012, 1089, 1115, 1123
AspLEI	GCGC	1 cut(s)	1148
AspS9I	GGNCC	3 cut(s)	508, 606, 936
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	5 cut(s)	16, 755, 980, 1040, 1079
AvaII	GGWCC	2 cut(s)	508, 606
BalI	TGGCCA	1 cut(s)	714
BbvI	GCAGC	5 cut(s)	830, 937, 940, 943, 959
BccI	CCATC	6 cut(s)	190, 220, 393, 668, 797, 1019
BciT130I	CCWGG	3 cut(s)	55, 87, 621
BciVI	GTATCC	1 cut(s)	275
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	358, 760, 836
BfaI	CTAG	2 cut(s)	239, 846
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	1149
BfuI	GTATCC	1 cut(s)	275
BglII	AGATCT	2 cut(s)	302, 1184
BisI	GCNGC	5 cut(s)	819, 948, 951, 954, 957
BlsI	GCNGC	5 cut(s)	820, 949, 952, 955, 958
Bme1390I	CCNGG	4 cut(s)	55, 87, 335, 621
Bme18I	GGWCC	2 cut(s)	508, 606
BmgT120I	GGNCC	3 cut(s)	508, 606, 936
BmiI	GGNNCC	2 cut(s)	607, 608
BmrFI	CCNGG	4 cut(s)	55, 87, 335, 621
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	3 cut(s)	323, 853, 1021
BmuI	ACTGGG	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	620, 1172
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	901, 1092, 1109
Bse1I	ACTGG	4 cut(s)	479, 511, 641, 715
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	3 cut(s)	55, 87, 621
BseDI	CCNNGG	2 cut(s)	620, 1172
BseGI	GGATG	3 cut(s)	188, 314, 868
BseLI	CCNNNNNNNGG	3 cut(s)	901, 1092, 1109
BseMI	GCAATG	1 cut(s)	694
BseNI	ACTGG	4 cut(s)	479, 511, 641, 715
BseRI	GAGGAG	1 cut(s)	828
BseXI	GCAGC	5 cut(s)	830, 937, 940, 943, 959
BshFI	GGCC	3 cut(s)	714, 937, 1102
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	3 cut(s)	901, 1092, 1109
BsmAI	GTCTC	3 cut(s)	358, 760, 836
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	714, 937, 1102
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	5 cut(s)	302, 406, 658, 887, 1184
Bsp19I	CCATGG	1 cut(s)	1172
BspACI	CCGC	2 cut(s)	593, 699
BspANI	GGCC	3 cut(s)	714, 937, 1102
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	607, 608
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	1 cut(s)	895
BspQI	GCTCTTC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	694
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	4 cut(s)	479, 511, 641, 715
BssECI	CCNNGG	2 cut(s)	620, 1172
BssMI	GATC	5 cut(s)	302, 406, 658, 887, 1184
BssT1I	CCWWGG	1 cut(s)	1172
Bst2UI	CCWGG	3 cut(s)	55, 87, 621
Bst4CI	ACNGT	5 cut(s)	150, 576, 1022, 1055, 1162
Bst6I	CTCTTC	3 cut(s)	112, 386, 432
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	4 cut(s)	403, 662, 1104, 1188
BstDSI	CCRYGG	1 cut(s)	1172
BstF5I	GGATG	3 cut(s)	188, 314, 868
BstH2I	RGCGCY	1 cut(s)	1149
BstHHI	GCGC	1 cut(s)	1148
BstKTI	GATC	5 cut(s)	305, 409, 661, 890, 1187
BstMAI	GTCTC	3 cut(s)	358, 760, 836
BstMBI	GATC	5 cut(s)	302, 406, 658, 887, 1184
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 953, 956
BstNI	CCWGG	3 cut(s)	55, 87, 621
BstSCI	CCNGG	4 cut(s)	53, 85, 333, 619
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	5 cut(s)	830, 937, 940, 943, 959
BstX2I	RGATCY	2 cut(s)	302, 1184
BstXI	CCANNNNNNTGG	1 cut(s)	1025
BstYI	RGATCY	2 cut(s)	302, 1184
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	714, 937, 1102
BtgI	CCRYGG	1 cut(s)	1172
BtsCI	GGATG	3 cut(s)	188, 314, 868
BtsI	GCAGTG	2 cut(s)	137, 828
BtsIMutI	CAGTG	4 cut(s)	137, 828, 1018, 1060
Cac8I	GCNNGC	1 cut(s)	593
CaiI	CAGNNNCTG	1 cut(s)	953
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	1148
Cfr13I	GGNCC	3 cut(s)	508, 606, 936
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	151, 613
CspCI	CAANNNNNGTGG	2 cut(s)	536, 571
CviAII	CATG	5 cut(s)	392, 539, 567, 1173, 1197
CviQI	GTAC	2 cut(s)	151, 613
DdeI	CTNAG	4 cut(s)	403, 662, 1104, 1188
DpnI	GATC	5 cut(s)	304, 408, 660, 889, 1186
DpnII	GATC	5 cut(s)	302, 406, 658, 887, 1184
EaeI	YGGCCR	1 cut(s)	712
Eam1104I	CTCTTC	3 cut(s)	112, 386, 432
EarI	CTCTTC	3 cut(s)	112, 386, 432
Eco130I	CCWWGG	1 cut(s)	1172
Eco47I	GGWCC	2 cut(s)	508, 606
Eco57I	CTGAAG	2 cut(s)	372, 1113
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRI	GAATTC	1 cut(s)	1012
EcoRII	CCWGG	3 cut(s)	53, 85, 619
EcoT14I	CCWWGG	1 cut(s)	1172
ErhI	CCWWGG	1 cut(s)	1172
FaeI	CATG	5 cut(s)	395, 542, 570, 1176, 1200
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	5 cut(s)	391, 538, 566, 1172, 1196
FauI	CCCGC	1 cut(s)	600
FauNDI	CATATG	2 cut(s)	530, 1140
Fnu4HI	GCNGC	5 cut(s)	819, 948, 951, 954, 957
FokI	GGATG	3 cut(s)	175, 301, 875
Fsp4HI	GCNGC	5 cut(s)	819, 948, 951, 954, 957
FspBI	CTAG	2 cut(s)	239, 846
GlaI	GCGC	1 cut(s)	1147
GluI	GCNGC	5 cut(s)	819, 948, 951, 954, 957
HaeII	RGCGCY	1 cut(s)	1149
HaeIII	GGCC	3 cut(s)	714, 937, 1102
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	1148
Hin1II	CATG	5 cut(s)	395, 542, 570, 1176, 1200
Hin6I	GCGC	1 cut(s)	1146
HinP1I	GCGC	1 cut(s)	1146
HindIII	AAGCTT	2 cut(s)	411, 1072
HinfI	GANTC	3 cut(s)	40, 320, 395
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	5 cut(s)	16, 755, 980, 1040, 1079
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	7 cut(s)	75, 319, 352, 363, 502, 782, 1132
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	1 cut(s)	615
HpyAV	CCTTC	4 cut(s)	144, 278, 686, 1102
HpyCH4III	ACNGT	5 cut(s)	150, 576, 1022, 1055, 1162
HpyCH4V	TGCA	5 cut(s)	558, 725, 866, 922, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 953, 956
HpyF3I	CTNAG	4 cut(s)	403, 662, 1104, 1188
Hsp92II	CATG	5 cut(s)	395, 542, 570, 1176, 1200
HspAI	GCGC	1 cut(s)	1146
KflI	GGGWCCC	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	302, 406, 658, 887, 1184
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	2 cut(s)	528, 815
Lsp1109I	GCAGC	5 cut(s)	830, 937, 940, 943, 959
LweI	GCATC	3 cut(s)	323, 853, 1021
MaeI	CTAG	2 cut(s)	239, 846
MaeIII	GTNAC	5 cut(s)	158, 570, 875, 1156, 1192
MalI	GATC	5 cut(s)	304, 408, 660, 889, 1186
MboI	GATC	5 cut(s)	302, 406, 658, 887, 1184
MflI	RGATCY	2 cut(s)	302, 1184
MlsI	TGGCCA	1 cut(s)	714
MluNI	TGGCCA	1 cut(s)	714
Mox20I	TGGCCA	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	2 cut(s)	932, 1050
MslI	CAYNNNNRTG	2 cut(s)	390, 1023
Msp20I	TGGCCA	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	4 cut(s)	55, 87, 335, 621
MvaI	CCWGG	3 cut(s)	55, 87, 621
MwoI	GCNNNNNNNGC	3 cut(s)	87, 953, 956
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	1172
NdeI	CATATG	2 cut(s)	530, 1140
NdeII	GATC	5 cut(s)	302, 406, 658, 887, 1184
NlaIII	CATG	5 cut(s)	395, 542, 570, 1176, 1200
NlaIV	GGNNCC	2 cut(s)	607, 608
NmuCI	GTSAC	1 cut(s)	158
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	40, 320, 395
PflMI	CCANNNNNTGG	2 cut(s)	901, 1092
PkrI	GCNGC	5 cut(s)	820, 949, 952, 955, 958
PpuMI	RGGWCCY	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	606
Psp6I	CCWGG	3 cut(s)	53, 85, 619
PspGI	CCWGG	3 cut(s)	53, 85, 619
PspN4I	GGNNCC	2 cut(s)	607, 608
PspPI	GGNCC	3 cut(s)	508, 606, 936
PspPPI	RGGWCCY	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	2 cut(s)	302, 1184
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	2 cut(s)	152, 614
RsaNI	GTAC	2 cut(s)	151, 613
RseI	CAYNNNNRTG	2 cut(s)	390, 1023
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	932, 1050
SatI	GCNGC	5 cut(s)	819, 948, 951, 954, 957
Sau3AI	GATC	5 cut(s)	302, 406, 658, 887, 1184
Sau96I	GGNCC	3 cut(s)	508, 606, 936
ScrFI	CCNGG	4 cut(s)	55, 87, 335, 621
SfaNI	GCATC	3 cut(s)	323, 853, 1021
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	2 cut(s)	508, 606
SmiMI	CAYNNNNRTG	2 cut(s)	390, 1023
SsiI	CCGC	2 cut(s)	593, 699
SspMI	CTAG	2 cut(s)	239, 846
StyD4I	CCNGG	4 cut(s)	53, 85, 333, 619
StyI	CCWWGG	1 cut(s)	1172
TaaI	ACNGT	5 cut(s)	150, 576, 1022, 1055, 1162
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	3 cut(s)	40, 320, 395
Tru1I	TTAA	2 cut(s)	932, 1050
Tru9I	TTAA	2 cut(s)	932, 1050
TscAI	CASTG	4 cut(s)	144, 828, 1025, 1060
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	5 cut(s)	818, 947, 950, 953, 956
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	105, 380, 705, 747
TspRI	CASTG	4 cut(s)	144, 828, 1025, 1060
Van91I	CCANNNNNTGG	2 cut(s)	901, 1092
VpaK11BI	GGWCC	2 cut(s)	508, 606
XapI	RAATTY	6 cut(s)	7, 776, 1012, 1089, 1115, 1123
XspI	CTAG	2 cut(s)	239, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.