Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015612

Physical Location & Seq

Genomic Coordinates Reverse (-)

62659321 .. 62661260

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG418200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGTGGATTCAGTTTGCCGGTATTCTAGAATGTCTTGGAATCGAGCTCAAATCGAGCTCCTCCATCGTCAATCTCGGTTTCTTTCGTCTTCTCCTTCACTGCCATATAATAGTGAATATCAGAAGCAATCAATCCCACCATCTTCATCTTCTGGCAATAAAATTAGTCCAGCAATTCTCTTCATCATAATTGTTCTAGCTGTTGTGTTTTTCGTATCCGGAATCCTTCACTTACTTGTTAGATATCTCACCAAGCATAGATCTTCAGCGATTTCTGAATCCAACAGATACCCGGAAATGTCTGGGTCTGGAGTTCTCCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCTGGATTAGATCAGGCTTTCATTGATGCTCTTCCTGTGTTCCTTTATAAAGAGTTGAAGGGTCTGAATGAGCCATTTGATTGTCCAGTTTGTCTGTGTGAGTTTACTGAAAAGGACCAGCTGAGATTGCTTCCATTATGTAGTCATGCTTTTCACATTGATTGCATAGACACATGGTTACTGTCTAATTCTACTTGCCCTCTTTGTAGAGGGACACTATACACACCAGGGATAGCCATTGAGAACCCGGTTTTTGATTTCGATGATTCGAGGGAAGAGGAAGGTTTTTCAGGGAATGGAGGAAATGGGGGTCTGATTTCTGGTCAAAAGTCTGCAGAGAATGAGATTGAAAAGAGAGTGTTTTCTGTGAGACTTGGAAAGTTCAGAAGTACTACTACGACAAATGTCGAAGGAGATGAAGGAAGAGGTGTGGAGAAAATAGAGGGAGAGACTAGTAGTAGTAATTTGGATGCAAGGAGATGTTACTCAATGGGATCATACCAATATGTGGTAGCTGATTTGGAGGTTCAAGTTGCTCTGAGGCCCAAAAGATCAGGTGGTAATGGTGATAGTATGAGGATTGTGAGAGGGAGGGTGGGGCAAAATGGGAATTCCAACAATGATAGTGATACTGAGGGCAAAAAAATTGGAGGTAAAGGTGAAAGCTTTTCTGTTTCTAAAATCTGGCTGTGGCCTAAAAAGGGCAAATTTCCAAGTTCTGCAGAAACCCAAATGGCTGCTACTTCCTCAGCTACCGTGGGTTTGCCATGGAGTGATAATAGATCTCAGGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

383

Amino Acids

42.35

Weight (kDa)

6.67

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	144 - 188	3.1e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	145 - 188	5.9e-14	Ring finger domain
zf-RING_11	PF17123	145 - 174	2.8e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34840
malus_domestica	MD13G1089200.v1.1 MD16G1089400.v1.1
prunus_persica	Prupe.1G256600_v2.0.a1
pyrus_communis	pycom16g07650
rosa_chinensis	RchiOBHm_Chr4g0444181
rosa_laevigata	RLG00000005849
rosa_multiflora	Rmu_sc0001001.1_g000021 Rmu_sc0017354.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384770
rosa_rugosa	Rorug04G0350700
rosa_samantha	Rh4AG411500 Rh4BG422900 Rh4CG437200 Rh4DG418200
rosa_wichuraiana	Rw4G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	862
AccIII	TCCGGA	1 cut(s)	218
AclWI	GGATC	1 cut(s)	856
AcsI	RAATTY	2 cut(s)	964, 1061
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	2 cut(s)	862, 1055
AgsI	TTSAA	3 cut(s)	412, 704, 884
AhlI	ACTAGT	1 cut(s)	806
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	8 cut(s)	47, 58, 200, 337, 475, 869, 1020, 1106
AluI	AGCT	8 cut(s)	47, 58, 200, 337, 475, 869, 1020, 1106
Alw21I	GWGCWC	2 cut(s)	49, 60
Alw26I	GTCTC	3 cut(s)	316, 718, 797
AlwI	GGATC	1 cut(s)	856
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	2 cut(s)	896, 1046
ApeKI	GCWGC	2 cut(s)	334, 1091
ApoI	RAATTY	2 cut(s)	964, 1061
AspS9I	GGNCC	2 cut(s)	469, 897
AsuC2I	CCSGG	2 cut(s)	293, 602
AsuHPI	GGTGA	3 cut(s)	241, 932, 1025
AvaII	GGWCC	1 cut(s)	469
BanII	GRGCYC	2 cut(s)	49, 60
BarI	GAAGNNNNNNTAC	2 cut(s)	733, 765
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	49, 60
BbvCI	CCTCAGC	1 cut(s)	1102
BbvI	GCAGC	2 cut(s)	346, 1078
BccI	CCATC	3 cut(s)	72, 148, 351
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	2 cut(s)	226, 1138
BcnI	CCSGG	2 cut(s)	293, 602
BcoDI	GTCTC	3 cut(s)	316, 718, 797
BcuI	ACTAGT	1 cut(s)	806
BfaI	CTAG	3 cut(s)	27, 197, 807
BfmI	CTRYAG	2 cut(s)	687, 1074
BfuI	GTATCC	2 cut(s)	226, 1138
BglII	AGATCT	2 cut(s)	260, 1136
BisI	GCNGC	2 cut(s)	335, 1092
BlsI	GCNGC	2 cut(s)	336, 1093
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	3 cut(s)	293, 582, 602
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	469, 897
BmrFI	CCNGG	3 cut(s)	293, 582, 602
BmsI	GCATC	2 cut(s)	370, 814
BoxI	GACNNNNGTC	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	302, 330
Bpu10I	CCTNAGC	1 cut(s)	1102
BpuMI	CCSGG	2 cut(s)	293, 602
BsaJI	CCNNGG	3 cut(s)	581, 1110, 1121
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	862, 1055
Bse118I	RCCGGY	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	440
BseAI	TCCGGA	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	3 cut(s)	581, 1110, 1121
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	2 cut(s)	862, 1055
BseMII	CTCAG	4 cut(s)	467, 884, 978, 1116
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	346, 1078
BshFI	GGCC	2 cut(s)	898, 1048
BsiHKAI	GWGCWC	2 cut(s)	49, 60
BsiSI	CCGG	4 cut(s)	19, 219, 293, 602
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	862, 1055
BsmAI	GTCTC	3 cut(s)	316, 718, 797
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	2 cut(s)	898, 1048
Bsp1286I	GDGCHC	2 cut(s)	49, 60
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	260, 364, 848, 905, 1136
Bsp19I	CCATGG	1 cut(s)	1121
BspANI	GGCC	2 cut(s)	898, 1048
BspCNI	CTCAG	4 cut(s)	468, 885, 979, 1115
BspEI	TCCGGA	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	349
BspMAI	CTGCAG	2 cut(s)	691, 1078
BspPI	GGATC	1 cut(s)	856
BspQI	GCTCTTC	2 cut(s)	344, 390
BsrFI	RCCGGY	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	581, 1110, 1121
BssMI	GATC	5 cut(s)	260, 364, 848, 905, 1136
BssT1I	CCWWGG	1 cut(s)	1121
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	3 cut(s)	327, 537, 1111
Bst6I	CTCTTC	5 cut(s)	185, 344, 390, 624, 772
BstDEI	CTNAG	5 cut(s)	476, 893, 987, 1102, 1140
BstDSI	CCRYGG	2 cut(s)	1110, 1121
BstF5I	GGATG	1 cut(s)	829
BstKTI	GATC	5 cut(s)	263, 367, 851, 908, 1139
BstMAI	GTCTC	3 cut(s)	316, 718, 797
BstMBI	GATC	5 cut(s)	260, 364, 848, 905, 1136
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	582
BstPAI	GACNNNNGTC	1 cut(s)	758
BstSCI	CCNGG	3 cut(s)	291, 580, 600
BstSFI	CTRYAG	2 cut(s)	687, 1074
BstV1I	GCAGC	2 cut(s)	346, 1078
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	260, 1136
BstYI	RGATCY	2 cut(s)	260, 1136
BsuI	GTATCC	2 cut(s)	226, 1138
BsuRI	GGCC	2 cut(s)	898, 1048
BtgI	CCRYGG	2 cut(s)	1110, 1121
BtsCI	GGATG	1 cut(s)	829
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	469, 897
Csp6I	GTAC	1 cut(s)	744
CviAII	CATG	5 cut(s)	350, 500, 528, 1122, 1149
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	5 cut(s)	476, 893, 987, 1102, 1140
DpnI	GATC	5 cut(s)	262, 366, 850, 907, 1138
DpnII	GATC	5 cut(s)	260, 364, 848, 905, 1136
Eam1104I	CTCTTC	5 cut(s)	185, 344, 390, 624, 772
EarI	CTCTTC	5 cut(s)	185, 344, 390, 624, 772
Ecl136II	GAGCTC	2 cut(s)	47, 58
Eco130I	CCWWGG	1 cut(s)	1121
Eco24I	GRGCYC	2 cut(s)	49, 60
Eco32I	GATATC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	2 cut(s)	47, 58
Eco57I	CTGAAG	1 cut(s)	249
EcoICRI	GAGCTC	2 cut(s)	47, 58
EcoRI	GAATTC	1 cut(s)	964
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	1121
EcoT38I	GRGCYC	2 cut(s)	49, 60
ErhI	CCWWGG	1 cut(s)	1121
FaeI	CATG	5 cut(s)	353, 503, 531, 1125, 1152
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	5 cut(s)	349, 499, 527, 1121, 1148
Fnu4HI	GCNGC	2 cut(s)	335, 1092
FokI	GGATG	1 cut(s)	836
FriOI	GRGCYC	2 cut(s)	49, 60
Fsp4HI	GCNGC	2 cut(s)	335, 1092
FspBI	CTAG	3 cut(s)	27, 197, 807
GluI	GCNGC	2 cut(s)	335, 1092
GsuI	CTGGAG	2 cut(s)	302, 330
HaeIII	GGCC	2 cut(s)	898, 1048
HapII	CCGG	4 cut(s)	19, 219, 293, 602
Hin1II	CATG	5 cut(s)	353, 503, 531, 1125, 1152
HindIII	AAGCTT	1 cut(s)	1018
HinfI	GANTC	6 cut(s)	8, 40, 222, 278, 353, 620
HpaII	CCGG	4 cut(s)	19, 219, 293, 602
HphI	GGTGA	3 cut(s)	241, 932, 1025
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	6 cut(s)	123, 277, 420, 669, 740, 894
Hpy188III	TCNNGA	7 cut(s)	27, 219, 309, 319, 350, 357, 1142
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	6 cut(s)	105, 236, 406, 629, 758, 767
HpyCH4III	ACNGT	3 cut(s)	327, 537, 1111
HpyCH4V	TGCA	4 cut(s)	519, 689, 827, 1076
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	5 cut(s)	476, 893, 987, 1102, 1140
Hsp92II	CATG	5 cut(s)	353, 503, 531, 1125, 1152
Kpn2I	TCCGGA	1 cut(s)	218
Kzo9I	GATC	5 cut(s)	260, 364, 848, 905, 1136
LguI	GCTCTTC	2 cut(s)	344, 390
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	2 cut(s)	346, 1078
LweI	GCATC	2 cut(s)	370, 814
MaeI	CTAG	3 cut(s)	27, 197, 807
MaeIII	GTNAC	3 cut(s)	327, 531, 836
MalI	GATC	5 cut(s)	262, 366, 850, 907, 1138
MboI	GATC	5 cut(s)	260, 364, 848, 905, 1136
MflI	RGATCY	2 cut(s)	260, 1136
MhlI	GDGCHC	2 cut(s)	49, 60
MluCI	AATT	8 cut(s)	162, 174, 189, 541, 817, 964, 999, 1061
MmeI	TCCRAC	2 cut(s)	306, 993
MroI	TCCGGA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	4 cut(s)	19, 219, 293, 602
MspR9I	CCNGG	3 cut(s)	293, 582, 602
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	1 cut(s)	481
NciI	CCSGG	2 cut(s)	293, 602
NcoI	CCATGG	1 cut(s)	1121
NdeII	GATC	5 cut(s)	260, 364, 848, 905, 1136
NlaIII	CATG	5 cut(s)	353, 503, 531, 1125, 1152
PagI	TCATGA	1 cut(s)	349
PciSI	GCTCTTC	2 cut(s)	344, 390
PfeI	GAWTC	6 cut(s)	8, 40, 222, 278, 353, 620
PflMI	CCANNNNNTGG	1 cut(s)	862
PkrI	GCNGC	2 cut(s)	336, 1093
PshAI	GACNNNNGTC	1 cut(s)	758
PsiI	TTATAA	1 cut(s)	402
Psp124BI	GAGCTC	2 cut(s)	49, 60
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	469, 897
PstI	CTGCAG	2 cut(s)	691, 1078
PsuI	RGATCY	2 cut(s)	260, 1136
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
RseI	CAYNNNNRTG	1 cut(s)	348
SacI	GAGCTC	2 cut(s)	49, 60
SapI	GCTCTTC	2 cut(s)	344, 390
SatI	GCNGC	2 cut(s)	335, 1092
Sau3AI	GATC	5 cut(s)	260, 364, 848, 905, 1136
Sau96I	GGNCC	2 cut(s)	469, 897
ScaI	AGTACT	1 cut(s)	745
ScrFI	CCNGG	3 cut(s)	293, 582, 602
SduI	GDGCHC	2 cut(s)	49, 60
SfaNI	GCATC	2 cut(s)	370, 814
SfcI	CTRYAG	2 cut(s)	687, 1074
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	348
SpeI	ACTAGT	1 cut(s)	806
Sse9I	AATT	8 cut(s)	162, 174, 189, 541, 817, 964, 999, 1061
SspMI	CTAG	3 cut(s)	27, 197, 807
SstI	GAGCTC	2 cut(s)	49, 60
StyD4I	CCNGG	3 cut(s)	291, 580, 600
StyI	CCWWGG	1 cut(s)	1121
TaaI	ACNGT	3 cut(s)	327, 537, 1111
TaqI	TCGA	5 cut(s)	43, 54, 615, 623, 762
TasI	AATT	8 cut(s)	162, 174, 189, 541, 817, 964, 999, 1061
TatI	WGTACW	1 cut(s)	743
TfiI	GAWTC	6 cut(s)	8, 40, 222, 278, 353, 620
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	2 cut(s)	334, 1091
TspDTI	ATGAA	5 cut(s)	135, 172, 338, 364, 786
TspRI	CASTG	1 cut(s)	105
Van91I	CCANNNNNTGG	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	964, 1061
XbaI	TCTAGA	1 cut(s)	26
XspI	CTAG	3 cut(s)	27, 197, 807
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.