Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015612

Physical Location & Seq

Genomic Coordinates Forward (+)

5022104 .. 5023144

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCTTGGAATCAAGCTCAATTCAGGCAAAGAAGTTTGCTTTCCTCTTCACCGTCATCATCCTCTGGGGGTAAAATTGCCCCATCAGTTGTATTTATCATAATTGTTCTAGCTGTTATATTTTTTGTATCCGGAATCCTCCACCTGCTTGTTAGATTTCTCACAAAGCATAGATCTTCATCCATATCTGGATCCAATAGATACCCACAAATGTCTGGCTCTGAAGTTTTCCAGAGACAATTGCAGCAGCTCTTCCATCTCCACGATTCCGGCTTGGATCAAGCTTTCATTGATGCTCTCCCTGTGTTCCTTTACAAAGAGATTAAGGGTCTGAAAGAACCATTTGATTGTCCAGTTTGTCTCTGTGAGTTTTGTGAGAAGGATCGGCTGAGATTGCTCCCAATTTGTAGTCATGCTTTTCACATTGATTGCATTGACACATGGTTGTTGTCCAATTCGACTTGCCCTCTTTGTAGAGGGACCCTCCACACTCCAGGGATTGCTATCGAAAACCCGGTTTTCGATTTTGATGATCTGATGGAAGAAGGTGGTTCTTTGGGGAATGGAGGAAGTGGGGTTCTTGCCGGTCAAAAGTCCGCAGATAACGAGATTGCGGGTGAGAAGGTGTTTTCTGTGAGACTTGGGAAATTTAGAAGCACAAATGAGGAGGGAGTTGGTGGTGGCGGCGGCGGAGGAGAGAGGGTAGAGGGAGAAACCAGCAGAAGCAATTTGGATGCAAGGAGATGTTACTCAATGGGATCATACCAATATGTGGTGGCAGATTTAGAGTTGCAGGTGGCTTTGAGGCCCAAAAGGGCAGGTGATAGTGTGAGGCTTGTGAGAGGGAGAGTGGGACAAAATGGGAATTCTAGTAATTACAGTGTTGGTGGCGGAGATGCTGAGGGGAAGAAAATTAACAGTGCAAGTAAAGGTGAAAGCTTTTCTGTATCCAAGATTTGGATGTGGCCTAAGAAGGGTAAATTTCCAAGTTCTGCAGAAACCCATGTGGGTAATTCCTCTCTTACTGTGGGTTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

347

Amino Acids

37.43

Weight (kDa)

8.33

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	115 - 159	8.5e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	116 - 159	4e-13	Ring finger domain
zf-RING_11	PF17123	116 - 145	1.4e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34840
malus_domestica	MD13G1089200.v1.1 MD16G1089400.v1.1
prunus_persica	Prupe.1G256600_v2.0.a1
pyrus_communis	pycom16g07650
rosa_chinensis	RchiOBHm_Chr4g0444181
rosa_laevigata	RLG00000005849
rosa_multiflora	Rmu_sc0001001.1_g000021 Rmu_sc0017354.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384770
rosa_rugosa	Rorug04G0350700
rosa_samantha	Rh4AG411500 Rh4BG422900 Rh4CG437200 Rh4DG418200
rosa_wichuraiana	Rw4G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	153, 784, 809
Acc36I	ACCTGC	3 cut(s)	153, 784, 809
AccB7I	CCANNNNNTGG	2 cut(s)	772, 957
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	6 cut(s)	597, 614, 684, 687, 690, 891
AclWI	GGATC	5 cut(s)	186, 199, 285, 390, 766
AcsI	RAATTY	3 cut(s)	647, 865, 980
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	772, 957, 974
AjnI	CCWGG	1 cut(s)	493
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
AluBI	AGCT	5 cut(s)	17, 113, 250, 284, 939
AluI	AGCT	5 cut(s)	17, 113, 250, 284, 939
Alw26I	GTCTC	3 cut(s)	229, 365, 631
AlwI	GGATC	5 cut(s)	186, 199, 285, 390, 766
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	2 cut(s)	806, 965
ApeKI	GCWGC	2 cut(s)	244, 247
ApoI	RAATTY	3 cut(s)	647, 865, 980
AspS9I	GGNCC	2 cut(s)	480, 807
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	4 cut(s)	42, 629, 833, 944
AvaII	GGWCC	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	900
BbvI	GCAGC	2 cut(s)	256, 259
BccI	CCATC	3 cut(s)	91, 264, 532
BciT130I	CCWGG	1 cut(s)	495
BciVI	GTATCC	2 cut(s)	139, 958
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	3 cut(s)	229, 365, 631
BfaI	CTAG	2 cut(s)	110, 870
BfmI	CTRYAG	1 cut(s)	993
BfuAI	ACCTGC	3 cut(s)	153, 784, 809
BfuI	GTATCC	2 cut(s)	139, 958
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	4 cut(s)	245, 248, 685, 688
BlsI	GCNGC	4 cut(s)	246, 249, 686, 689
Bme1390I	CCNGG	2 cut(s)	495, 515
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	2 cut(s)	480, 807
BmiI	GGNNCC	3 cut(s)	193, 481, 482
BmrFI	CCNGG	2 cut(s)	495, 515
BmsI	GCATC	3 cut(s)	283, 724, 886
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	900
BpuMI	CCSGG	1 cut(s)	515
BsaBI	GATNNNNATC	2 cut(s)	178, 503
BsaJI	CCNNGG	1 cut(s)	494
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	772, 957, 974
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	1 cut(s)	353
Bse8I	GATNNNNATC	2 cut(s)	178, 503
BseAI	TCCGGA	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	4 cut(s)	59, 179, 739, 966
BseJI	GATNNNNATC	2 cut(s)	178, 503
BseLI	CCNNNNNNNGG	3 cut(s)	772, 957, 974
BseMII	CTCAG	2 cut(s)	380, 891
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	2 cut(s)	680, 708
BseXI	GCAGC	2 cut(s)	256, 259
BshFI	GGCC	2 cut(s)	808, 967
BsiSI	CCGG	4 cut(s)	132, 270, 515, 585
BslFI	GGGAC	2 cut(s)	493, 867
BslI	CCNNNNNNNGG	3 cut(s)	772, 957, 974
BsmAI	GTCTC	3 cut(s)	229, 365, 631
BsmFI	GGGAC	2 cut(s)	493, 867
BsnI	GGCC	2 cut(s)	808, 967
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	6 cut(s)	173, 191, 277, 382, 532, 758
BspACI	CCGC	6 cut(s)	597, 614, 684, 687, 690, 891
BspANI	GGCC	2 cut(s)	808, 967
BspCNI	CTCAG	2 cut(s)	381, 892
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	193, 481, 482
BspMAI	CTGCAG	1 cut(s)	997
BspMI	ACCTGC	3 cut(s)	153, 784, 809
BspPI	GGATC	5 cut(s)	186, 199, 285, 390, 766
BspQI	GCTCTTC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	6 cut(s)	173, 191, 277, 382, 532, 758
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	4 cut(s)	54, 881, 920, 1027
Bst6I	CTCTTC	2 cut(s)	52, 257
BstDEI	CTNAG	3 cut(s)	389, 900, 969
BstF5I	GGATG	4 cut(s)	59, 179, 739, 966
BstKTI	GATC	6 cut(s)	176, 194, 280, 385, 535, 761
BstMAI	GTCTC	3 cut(s)	229, 365, 631
BstMBI	GATC	6 cut(s)	173, 191, 277, 382, 532, 758
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	2 cut(s)	493, 513
BstSFI	CTRYAG	1 cut(s)	993
BstV1I	GCAGC	2 cut(s)	256, 259
BstX2I	RGATCY	2 cut(s)	173, 191
BstYI	RGATCY	2 cut(s)	173, 191
BsuI	GTATCC	2 cut(s)	139, 958
BsuRI	GGCC	2 cut(s)	808, 967
BtsCI	GGATG	4 cut(s)	59, 179, 739, 966
BtsIMutI	CAGTG	2 cut(s)	886, 925
BveI	ACCTGC	3 cut(s)	153, 784, 809
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	2 cut(s)	480, 807
CviAII	CATG	4 cut(s)	413, 441, 1004, 1038
DdeI	CTNAG	3 cut(s)	389, 900, 969
DpnI	GATC	6 cut(s)	175, 193, 279, 384, 534, 760
DpnII	GATC	6 cut(s)	173, 191, 277, 382, 532, 758
Eam1104I	CTCTTC	2 cut(s)	52, 257
EarI	CTCTTC	2 cut(s)	52, 257
EciI	GGCGGA	2 cut(s)	705, 906
Eco47I	GGWCC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	865
EcoRII	CCWGG	1 cut(s)	493
FaeI	CATG	4 cut(s)	416, 444, 1007, 1041
FaqI	GGGAC	2 cut(s)	493, 867
FatI	CATG	4 cut(s)	412, 440, 1003, 1037
FauI	CCCGC	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	245, 248, 685, 688
FokI	GGATG	4 cut(s)	46, 166, 746, 973
Fsp4HI	GCNGC	4 cut(s)	245, 248, 685, 688
FspBI	CTAG	2 cut(s)	110, 870
GluI	GCNGC	4 cut(s)	245, 248, 685, 688
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	808, 967
HapII	CCGG	4 cut(s)	132, 270, 515, 585
Hin1II	CATG	4 cut(s)	416, 444, 1007, 1041
HindIII	AAGCTT	2 cut(s)	282, 937
HinfI	GANTC	3 cut(s)	10, 135, 266
HpaII	CCGG	4 cut(s)	132, 270, 515, 585
HphI	GGTGA	4 cut(s)	42, 629, 833, 944
Hpy188I	TCNGA	3 cut(s)	223, 333, 537
Hpy188III	TCNNGA	3 cut(s)	132, 189, 232
HpyAV	CCTTC	4 cut(s)	373, 539, 616, 967
HpyCH4III	ACNGT	4 cut(s)	54, 881, 920, 1027
HpyCH4V	TGCA	6 cut(s)	244, 432, 737, 793, 923, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	3 cut(s)	389, 900, 969
Hsp92II	CATG	4 cut(s)	416, 444, 1007, 1041
KflI	GGGWCCC	1 cut(s)	480
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	6 cut(s)	173, 191, 277, 382, 532, 758
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	402
Lsp1109I	GCAGC	2 cut(s)	256, 259
LweI	GCATC	3 cut(s)	283, 724, 886
MaeI	CTAG	2 cut(s)	110, 870
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	6 cut(s)	175, 193, 279, 384, 534, 760
MboI	GATC	6 cut(s)	173, 191, 277, 382, 532, 758
MboII	GAAGA	5 cut(s)	39, 168, 244, 554, 919
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	2 cut(s)	173, 191
MroI	TCCGGA	1 cut(s)	131
MseI	TTAA	2 cut(s)	324, 915
MspI	CCGG	4 cut(s)	132, 270, 515, 585
MspR9I	CCNGG	2 cut(s)	495, 515
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	515
NdeII	GATC	6 cut(s)	173, 191, 277, 382, 532, 758
NlaIII	CATG	4 cut(s)	416, 444, 1007, 1041
NlaIV	GGNNCC	3 cut(s)	193, 481, 482
PaqCI	CACCTGC	3 cut(s)	153, 784, 809
PciSI	GCTCTTC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	10, 135, 266
PflMI	CCANNNNNTGG	2 cut(s)	772, 957
PkrI	GCNGC	4 cut(s)	246, 249, 686, 689
PpuMI	RGGWCCY	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	3 cut(s)	193, 481, 482
PspPI	GGNCC	2 cut(s)	480, 807
PspPPI	RGGWCCY	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	997
PsuI	RGATCY	2 cut(s)	173, 191
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	324, 915
SatI	GCNGC	4 cut(s)	245, 248, 685, 688
Sau3AI	GATC	6 cut(s)	173, 191, 277, 382, 532, 758
Sau96I	GGNCC	2 cut(s)	480, 807
ScrFI	CCNGG	2 cut(s)	495, 515
SfaNI	GCATC	3 cut(s)	283, 724, 886
SfcI	CTRYAG	1 cut(s)	993
SinI	GGWCC	1 cut(s)	480
SsiI	CCGC	6 cut(s)	597, 614, 684, 687, 690, 891
SspMI	CTAG	2 cut(s)	110, 870
StyD4I	CCNGG	2 cut(s)	493, 513
TaaI	ACNGT	4 cut(s)	54, 881, 920, 1027
TaqI	TCGA	3 cut(s)	458, 507, 522
TauI	GCSGC	2 cut(s)	687, 690
TfiI	GAWTC	3 cut(s)	10, 135, 266
Tru1I	TTAA	2 cut(s)	324, 915
Tru9I	TTAA	2 cut(s)	324, 915
TscAI	CASTG	2 cut(s)	886, 925
TseI	GCWGC	2 cut(s)	244, 247
TspDTI	ATGAA	2 cut(s)	168, 277
TspRI	CASTG	2 cut(s)	886, 925
Van91I	CCANNNNNTGG	2 cut(s)	772, 957
VpaK11BI	GGWCC	1 cut(s)	480
XapI	RAATTY	3 cut(s)	647, 865, 980
XspI	CTAG	2 cut(s)	110, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.