Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017354.1

Orthogroup ID

OG0015612

Physical Location & Seq

Genomic Coordinates Reverse (-)

195 .. 1316

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017354.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atgtcttggaatcgagctcaaatcgagctcctccatcgtcaatctcggtttctttcgtcttctccttcactgccatataatagtgaatatcagaagcaatcaatcccaccatcttcatcttctggcaataaaattagtccagcaattctcttcatcataattgttctagctgttgtgtttttcgtatccggaatccttcacttacttgttagatatctcaccaagcatagatcttcatcgatttctgaatccaacagatacccggaaatgtctgggtctggagttctccagagacagttacagcagctcttccatcttcatgattctggattagatcaggctttcattgatgctcttcctgtgttcctttataaagagttgaagggtctgaatgagccatttgattgtccagtttgtctgtgtgagtttactgaaaaggaccagctgagattgcttccattatgtagtcatgcttttcacattgattgcatagacacatggttactgtctaattctacttgccctctttgtagagggacactatacacaccagggatagccattgagaacccggtttttgatttcgatgattcgagggaagaggaaggtttttcagggaatggaggaaatggggctctgatttctggtcaaaaatctgcagagaatgagattgaaaagagagtgttttctgtgagacttggaaagttcagaagtactactacgacaaatgtcgaaggagatgaaggaagaggtgtggagagaatagagggagagactagtagtagtaatttggatgcaaggagatgttactcaatgggatcataccaatatgtggtagctgatttggaggttcaagttgctctgaggcccaaaagatcaggtggtcatggtgatagtatgaggattgtgagagggagggtggggcaaaatgggaattccaacaatgatagtgatactgaggggaaaaaaattggaggtaaaggtgaaagcttttctgtttctaaaatctggctatggcctaaaaagggcaaatttccaagttctgcagaaacccaaatggctgctacttcctcagctaccgtgggtttgccatggagtgataatagatctcaggatacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

373

Amino Acids

41.23

Weight (kDa)

6.47

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34840
malus_domestica	MD13G1089200.v1.1 MD16G1089400.v1.1
prunus_persica	Prupe.1G256600_v2.0.a1
pyrus_communis	pycom16g07650
rosa_chinensis	RchiOBHm_Chr4g0444181
rosa_laevigata	RLG00000005849
rosa_multiflora	Rmu_sc0001001.1_g000021 Rmu_sc0017354.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384770
rosa_rugosa	Rorug04G0350700
rosa_samantha	Rh4AG411500 Rh4BG422900 Rh4CG437200 Rh4DG418200
rosa_wichuraiana	Rw4G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	832
AccIII	TCCGGA	1 cut(s)	188
AclWI	GGATC	1 cut(s)	826
AcsI	RAATTY	2 cut(s)	934, 1031
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	2 cut(s)	832, 1025
AgsI	TTSAA	3 cut(s)	382, 674, 854
AhlI	ACTAGT	1 cut(s)	776
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	8 cut(s)	17, 28, 170, 307, 445, 839, 990, 1076
AluI	AGCT	8 cut(s)	17, 28, 170, 307, 445, 839, 990, 1076
Alw21I	GWGCWC	2 cut(s)	19, 30
Alw26I	GTCTC	3 cut(s)	286, 688, 767
AlwI	GGATC	1 cut(s)	826
Aor13HI	TCCGGA	1 cut(s)	188
AoxI	GGCC	2 cut(s)	866, 1016
ApeKI	GCWGC	2 cut(s)	304, 1061
ApoI	RAATTY	2 cut(s)	934, 1031
AspS9I	GGNCC	2 cut(s)	439, 867
AsuC2I	CCSGG	2 cut(s)	263, 572
AsuHPI	GGTGA	3 cut(s)	211, 902, 995
AvaII	GGWCC	1 cut(s)	439
BanII	GRGCYC	3 cut(s)	19, 30, 637
BarI	GAAGNNNNNNTAC	2 cut(s)	703, 735
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	19, 30
BbvCI	CCTCAGC	1 cut(s)	1072
BbvI	GCAGC	2 cut(s)	316, 1048
BccI	CCATC	3 cut(s)	42, 118, 321
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	2 cut(s)	196, 1108
BcnI	CCSGG	2 cut(s)	263, 572
BcoDI	GTCTC	3 cut(s)	286, 688, 767
BcuI	ACTAGT	1 cut(s)	776
BfaI	CTAG	2 cut(s)	167, 777
BfmI	CTRYAG	2 cut(s)	657, 1044
BfuI	GTATCC	2 cut(s)	196, 1108
BglII	AGATCT	2 cut(s)	230, 1106
BisI	GCNGC	2 cut(s)	305, 1062
BlsI	GCNGC	2 cut(s)	306, 1063
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	3 cut(s)	263, 552, 572
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	2 cut(s)	439, 867
BmrFI	CCNGG	3 cut(s)	263, 552, 572
BmsI	GCATC	2 cut(s)	340, 784
BoxI	GACNNNNGTC	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	272, 300
Bpu10I	CCTNAGC	1 cut(s)	1072
BpuMI	CCSGG	2 cut(s)	263, 572
Bsa29I	ATCGAT	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	235
BsaJI	CCNNGG	3 cut(s)	551, 1080, 1091
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	2 cut(s)	832, 1025
Bse1I	ACTGG	1 cut(s)	410
Bse8I	GATNNNNATC	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	552
BseCI	ATCGAT	1 cut(s)	239
BseDI	CCNNGG	3 cut(s)	551, 1080, 1091
BseGI	GGATG	1 cut(s)	799
BseJI	GATNNNNATC	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	832, 1025
BseMII	CTCAG	4 cut(s)	437, 854, 948, 1086
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	316, 1048
BshFI	GGCC	2 cut(s)	868, 1018
BshVI	ATCGAT	1 cut(s)	239
BsiHKAI	GWGCWC	2 cut(s)	19, 30
BsiSI	CCGG	3 cut(s)	189, 263, 572
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	2 cut(s)	832, 1025
BsmAI	GTCTC	3 cut(s)	286, 688, 767
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	868, 1018
Bsp1286I	GDGCHC	3 cut(s)	19, 30, 637
Bsp13I	TCCGGA	1 cut(s)	188
Bsp143I	GATC	5 cut(s)	230, 334, 818, 875, 1106
Bsp19I	CCATGG	1 cut(s)	1091
BspANI	GGCC	2 cut(s)	868, 1018
BspCNI	CTCAG	4 cut(s)	438, 855, 949, 1085
BspDI	ATCGAT	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	319
BspMAI	CTGCAG	2 cut(s)	661, 1048
BspPI	GGATC	1 cut(s)	826
BspQI	GCTCTTC	2 cut(s)	314, 360
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	551, 1080, 1091
BssMI	GATC	5 cut(s)	230, 334, 818, 875, 1106
BssT1I	CCWWGG	1 cut(s)	1091
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	3 cut(s)	297, 507, 1081
Bst6I	CTCTTC	5 cut(s)	155, 314, 360, 594, 742
BstDEI	CTNAG	5 cut(s)	446, 863, 957, 1072, 1110
BstDSI	CCRYGG	2 cut(s)	1080, 1091
BstF5I	GGATG	1 cut(s)	799
BstKTI	GATC	5 cut(s)	233, 337, 821, 878, 1109
BstMAI	GTCTC	3 cut(s)	286, 688, 767
BstMBI	GATC	5 cut(s)	230, 334, 818, 875, 1106
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstNI	CCWGG	1 cut(s)	552
BstPAI	GACNNNNGTC	1 cut(s)	728
BstSCI	CCNGG	3 cut(s)	261, 550, 570
BstSFI	CTRYAG	2 cut(s)	657, 1044
BstV1I	GCAGC	2 cut(s)	316, 1048
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	230, 1106
BstYI	RGATCY	2 cut(s)	230, 1106
Bsu15I	ATCGAT	1 cut(s)	239
BsuI	GTATCC	2 cut(s)	196, 1108
BsuRI	GGCC	2 cut(s)	868, 1018
BsuTUI	ATCGAT	1 cut(s)	239
BtgI	CCRYGG	2 cut(s)	1080, 1091
BtsCI	GGATG	1 cut(s)	799
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	439, 867
ClaI	ATCGAT	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	714
CviAII	CATG	6 cut(s)	320, 470, 498, 887, 1092, 1119
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	5 cut(s)	446, 863, 957, 1072, 1110
DpnI	GATC	5 cut(s)	232, 336, 820, 877, 1108
DpnII	GATC	5 cut(s)	230, 334, 818, 875, 1106
Eam1104I	CTCTTC	5 cut(s)	155, 314, 360, 594, 742
EarI	CTCTTC	5 cut(s)	155, 314, 360, 594, 742
Ecl136II	GAGCTC	2 cut(s)	17, 28
Eco130I	CCWWGG	1 cut(s)	1091
Eco24I	GRGCYC	3 cut(s)	19, 30, 637
Eco32I	GATATC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	2 cut(s)	17, 28
EcoICRI	GAGCTC	2 cut(s)	17, 28
EcoRI	GAATTC	1 cut(s)	934
EcoRII	CCWGG	1 cut(s)	550
EcoRV	GATATC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	1091
EcoT38I	GRGCYC	3 cut(s)	19, 30, 637
ErhI	CCWWGG	1 cut(s)	1091
FaeI	CATG	6 cut(s)	323, 473, 501, 890, 1095, 1122
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	6 cut(s)	319, 469, 497, 886, 1091, 1118
Fnu4HI	GCNGC	2 cut(s)	305, 1062
FokI	GGATG	1 cut(s)	806
FriOI	GRGCYC	3 cut(s)	19, 30, 637
Fsp4HI	GCNGC	2 cut(s)	305, 1062
FspBI	CTAG	2 cut(s)	167, 777
GluI	GCNGC	2 cut(s)	305, 1062
GsuI	CTGGAG	2 cut(s)	272, 300
HaeIII	GGCC	2 cut(s)	868, 1018
HapII	CCGG	3 cut(s)	189, 263, 572
Hin1II	CATG	6 cut(s)	323, 473, 501, 890, 1095, 1122
HindIII	AAGCTT	1 cut(s)	988
HinfI	GANTC	5 cut(s)	10, 192, 248, 323, 590
HpaII	CCGG	3 cut(s)	189, 263, 572
HphI	GGTGA	3 cut(s)	211, 902, 995
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	6 cut(s)	93, 247, 390, 639, 710, 864
Hpy188III	TCNNGA	6 cut(s)	189, 279, 289, 320, 327, 1112
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	6 cut(s)	75, 206, 376, 599, 728, 737
HpyCH4III	ACNGT	3 cut(s)	297, 507, 1081
HpyCH4V	TGCA	4 cut(s)	489, 659, 797, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpyF3I	CTNAG	5 cut(s)	446, 863, 957, 1072, 1110
Hsp92II	CATG	6 cut(s)	323, 473, 501, 890, 1095, 1122
Kpn2I	TCCGGA	1 cut(s)	188
Kzo9I	GATC	5 cut(s)	230, 334, 818, 875, 1106
LguI	GCTCTTC	2 cut(s)	314, 360
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	316, 1048
LweI	GCATC	2 cut(s)	340, 784
MaeI	CTAG	2 cut(s)	167, 777
MaeIII	GTNAC	3 cut(s)	297, 501, 806
MalI	GATC	5 cut(s)	232, 336, 820, 877, 1108
MboI	GATC	5 cut(s)	230, 334, 818, 875, 1106
MflI	RGATCY	2 cut(s)	230, 1106
MhlI	GDGCHC	3 cut(s)	19, 30, 637
MluCI	AATT	8 cut(s)	132, 144, 159, 511, 787, 934, 969, 1031
MmeI	TCCRAC	2 cut(s)	276, 963
MroI	TCCGGA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	3 cut(s)	189, 263, 572
MspR9I	CCNGG	3 cut(s)	263, 552, 572
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	451
NciI	CCSGG	2 cut(s)	263, 572
NcoI	CCATGG	1 cut(s)	1091
NdeII	GATC	5 cut(s)	230, 334, 818, 875, 1106
NlaIII	CATG	6 cut(s)	323, 473, 501, 890, 1095, 1122
PagI	TCATGA	1 cut(s)	319
PciSI	GCTCTTC	2 cut(s)	314, 360
PfeI	GAWTC	5 cut(s)	10, 192, 248, 323, 590
PflMI	CCANNNNNTGG	1 cut(s)	832
PkrI	GCNGC	2 cut(s)	306, 1063
PshAI	GACNNNNGTC	1 cut(s)	728
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	2 cut(s)	19, 30
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspPI	GGNCC	2 cut(s)	439, 867
PstI	CTGCAG	2 cut(s)	661, 1048
PsuI	RGATCY	2 cut(s)	230, 1106
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	2 cut(s)	19, 30
SapI	GCTCTTC	2 cut(s)	314, 360
SatI	GCNGC	2 cut(s)	305, 1062
Sau3AI	GATC	5 cut(s)	230, 334, 818, 875, 1106
Sau96I	GGNCC	2 cut(s)	439, 867
ScaI	AGTACT	1 cut(s)	715
ScrFI	CCNGG	3 cut(s)	263, 552, 572
SduI	GDGCHC	3 cut(s)	19, 30, 637
SfaNI	GCATC	2 cut(s)	340, 784
SfcI	CTRYAG	2 cut(s)	657, 1044
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	318
SpeI	ACTAGT	1 cut(s)	776
Sse9I	AATT	8 cut(s)	132, 144, 159, 511, 787, 934, 969, 1031
SspMI	CTAG	2 cut(s)	167, 777
SstI	GAGCTC	2 cut(s)	19, 30
StyD4I	CCNGG	3 cut(s)	261, 550, 570
StyI	CCWWGG	1 cut(s)	1091
TaaI	ACNGT	3 cut(s)	297, 507, 1081
TaqI	TCGA	6 cut(s)	13, 24, 239, 585, 593, 732
TasI	AATT	8 cut(s)	132, 144, 159, 511, 787, 934, 969, 1031
TatI	WGTACW	1 cut(s)	713
TfiI	GAWTC	5 cut(s)	10, 192, 248, 323, 590
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	2 cut(s)	304, 1061
TspDTI	ATGAA	6 cut(s)	105, 142, 225, 308, 334, 756
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	1 cut(s)	832
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	2 cut(s)	934, 1031
XspI	CTAG	2 cut(s)	167, 777
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.