Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015612

Physical Location & Seq

Genomic Coordinates Reverse (-)

63992288 .. 63994004

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGTGGATTTAGTTTGCCGGTATTCTAAAATGTCTTGGAATCGAGCTCAGATCGAGCTCCACCATCGTCAATCTCGGTTTCTTTCGTCTTCTCCTTCACTGCCATATAATAGTGAATATCAGAAGCAGTCAATCCCACCATCTTCATCTTCTGGCAATAAAATTAGTCCTGCAATTCTCTTCATCATAATTGTTCTAGCTGTTGTGTTTTTCGTATCCGGAATCCTTCACTTGCTTGTTAGATATCTCACCAAGCATAGATCTTCATCGATTTCTGAATCCAACAGATACCCGGAATTGTCTGGGTCTGGAGTTCTCCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCTGGATTAGATCAGGCTTTCATTGATGCTCTTCCTGTGTTCCTTTATAAAGAGTTGAAGGGTCTGAATGAGCCATTTGATTGTCCAGTTTGTCTGTGTGAGTTTACTGAAAAGGACCAGCTGAGATTGCTTCCATTATGTAGTCATGCTTTTCACATTGATTGCATAGACACATGGTTACTGTCTAATTCTACTTGCCCTCTTTGTAGAGGGACACTATACACACCAGGGATTGCCATTGAGAACCCGGTTTTTGATTTTGATGATTCGAGGGAAGAGGAAGGTTTTTCAGGGAATGGGGGTCTGATTTCTGGTCAAAAGTCTGCAGAGAATGAGATTGAAAAGAGAGTGTTTTCTGTGAGACTTGGAAAGTTCAGAAGTACTACTACTACAAATGTCGAAGGAGATGAAGGAAAAGGTGTGGAGGGAATAGAGGGAGAGACTAGTAGTAGTAATTTGGATGCAAGGAGATGTTACTCAATGGGATCATACCAATATGTGGTAGCTGATTTGGAGGTTCAAGTTGCTCTGAGGCCCAAAAGATCAGGTGGTAATGGTGATAGTATGAGGATTGAGAGAGGGAGGGTGGGGCAAAATGGGAATTCCAACAATGATAGTGATACTGAGGGGAAAAAAATTGGAGGTAAAGGTGAAAGCTTTTCTGTTTCTAAAATCTGGCTATGGCCTAAAAAGGGCAAATTTCCAAGTTCTGCAGAAACCCAAATGGCTGCTACTTCCTCAGCTACCGTGGGTTTGCCTTGGAGTGATAATAGATCTCAGGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

380

Amino Acids

42.07

Weight (kDa)

6.27

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	144 - 188	3e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	145 - 188	5.8e-14	Ring finger domain
zf-RING_11	PF17123	145 - 174	2.7e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34840
malus_domestica	MD13G1089200.v1.1 MD16G1089400.v1.1
prunus_persica	Prupe.1G256600_v2.0.a1
pyrus_communis	pycom16g07650
rosa_chinensis	RchiOBHm_Chr4g0444181
rosa_laevigata	RLG00000005849
rosa_multiflora	Rmu_sc0001001.1_g000021 Rmu_sc0017354.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384770
rosa_rugosa	Rorug04G0350700
rosa_samantha	Rh4AG411500 Rh4BG422900 Rh4CG437200 Rh4DG418200
rosa_wichuraiana	Rw4G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	853
AccIII	TCCGGA	1 cut(s)	218
AclWI	GGATC	1 cut(s)	847
AcsI	RAATTY	2 cut(s)	955, 1052
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	2 cut(s)	853, 1046
AgsI	TTSAA	3 cut(s)	412, 695, 875
AhlI	ACTAGT	1 cut(s)	797
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	8 cut(s)	47, 58, 200, 337, 475, 860, 1011, 1097
AluI	AGCT	8 cut(s)	47, 58, 200, 337, 475, 860, 1011, 1097
Alw21I	GWGCWC	2 cut(s)	49, 60
Alw26I	GTCTC	3 cut(s)	316, 709, 788
AlwI	GGATC	1 cut(s)	847
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	2 cut(s)	887, 1037
ApeKI	GCWGC	2 cut(s)	334, 1082
ApoI	RAATTY	2 cut(s)	955, 1052
AspS9I	GGNCC	2 cut(s)	469, 888
AsuC2I	CCSGG	2 cut(s)	293, 602
AsuHPI	GGTGA	3 cut(s)	241, 923, 1016
AvaII	GGWCC	1 cut(s)	469
BanII	GRGCYC	2 cut(s)	49, 60
BarI	GAAGNNNNNNTAC	2 cut(s)	724, 756
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	49, 60
BbvCI	CCTCAGC	1 cut(s)	1093
BbvI	GCAGC	2 cut(s)	346, 1069
BccI	CCATC	3 cut(s)	72, 148, 351
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	2 cut(s)	226, 1129
BcnI	CCSGG	2 cut(s)	293, 602
BcoDI	GTCTC	3 cut(s)	316, 709, 788
BcuI	ACTAGT	1 cut(s)	797
BfaI	CTAG	2 cut(s)	197, 798
BfmI	CTRYAG	2 cut(s)	678, 1065
BfuI	GTATCC	2 cut(s)	226, 1129
BglII	AGATCT	2 cut(s)	260, 1127
BisI	GCNGC	2 cut(s)	335, 1083
BlsI	GCNGC	2 cut(s)	336, 1084
BmcAI	AGTACT	1 cut(s)	736
Bme1390I	CCNGG	3 cut(s)	293, 582, 602
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	469, 888
BmrFI	CCNGG	3 cut(s)	293, 582, 602
BmsI	GCATC	2 cut(s)	370, 805
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	302, 330
Bpu10I	CCTNAGC	1 cut(s)	1093
BpuMI	CCSGG	2 cut(s)	293, 602
Bsa29I	ATCGAT	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	581, 1101, 1112
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	853, 1046
Bse118I	RCCGGY	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	582
BseCI	ATCGAT	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	581, 1101, 1112
BseGI	GGATG	1 cut(s)	820
BseJI	GATNNNNATC	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	853, 1046
BseMII	CTCAG	5 cut(s)	62, 467, 875, 969, 1107
BseNI	ACTGG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	346, 1069
BshFI	GGCC	2 cut(s)	889, 1039
BshVI	ATCGAT	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	49, 60
BsiSI	CCGG	4 cut(s)	19, 219, 293, 602
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	853, 1046
BsmAI	GTCTC	3 cut(s)	316, 709, 788
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	2 cut(s)	889, 1039
Bsp1286I	GDGCHC	2 cut(s)	49, 60
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	6 cut(s)	51, 260, 364, 839, 896, 1127
BspANI	GGCC	2 cut(s)	889, 1039
BspCNI	CTCAG	5 cut(s)	61, 468, 876, 970, 1106
BspDI	ATCGAT	1 cut(s)	269
BspEI	TCCGGA	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	349
BspMAI	CTGCAG	2 cut(s)	682, 1069
BspPI	GGATC	1 cut(s)	847
BspQI	GCTCTTC	2 cut(s)	344, 390
BsrFI	RCCGGY	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	581, 1101, 1112
BssMI	GATC	6 cut(s)	51, 260, 364, 839, 896, 1127
BssT1I	CCWWGG	1 cut(s)	1112
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	3 cut(s)	327, 537, 1102
Bst6I	CTCTTC	4 cut(s)	185, 344, 390, 624
BstDEI	CTNAG	6 cut(s)	48, 476, 884, 978, 1093, 1131
BstDSI	CCRYGG	1 cut(s)	1101
BstF5I	GGATG	1 cut(s)	820
BstKTI	GATC	6 cut(s)	54, 263, 367, 842, 899, 1130
BstMAI	GTCTC	3 cut(s)	316, 709, 788
BstMBI	GATC	6 cut(s)	51, 260, 364, 839, 896, 1127
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	582
BstSCI	CCNGG	3 cut(s)	291, 580, 600
BstSFI	CTRYAG	2 cut(s)	678, 1065
BstV1I	GCAGC	2 cut(s)	346, 1069
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	260, 1127
BstYI	RGATCY	2 cut(s)	260, 1127
Bsu15I	ATCGAT	1 cut(s)	269
BsuI	GTATCC	2 cut(s)	226, 1129
BsuRI	GGCC	2 cut(s)	889, 1039
BsuTUI	ATCGAT	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	1101
BtsCI	GGATG	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	469, 888
ClaI	ATCGAT	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	4 cut(s)	350, 500, 528, 1140
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	6 cut(s)	48, 476, 884, 978, 1093, 1131
DpnI	GATC	6 cut(s)	53, 262, 366, 841, 898, 1129
DpnII	GATC	6 cut(s)	51, 260, 364, 839, 896, 1127
Eam1104I	CTCTTC	4 cut(s)	185, 344, 390, 624
EarI	CTCTTC	4 cut(s)	185, 344, 390, 624
Ecl136II	GAGCTC	2 cut(s)	47, 58
Eco130I	CCWWGG	1 cut(s)	1112
Eco24I	GRGCYC	2 cut(s)	49, 60
Eco32I	GATATC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	2 cut(s)	47, 58
EcoICRI	GAGCTC	2 cut(s)	47, 58
EcoRI	GAATTC	1 cut(s)	955
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	1112
EcoT38I	GRGCYC	2 cut(s)	49, 60
ErhI	CCWWGG	1 cut(s)	1112
FaeI	CATG	4 cut(s)	353, 503, 531, 1143
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	4 cut(s)	349, 499, 527, 1139
Fnu4HI	GCNGC	2 cut(s)	335, 1083
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	2 cut(s)	49, 60
Fsp4HI	GCNGC	2 cut(s)	335, 1083
FspBI	CTAG	2 cut(s)	197, 798
GluI	GCNGC	2 cut(s)	335, 1083
GsuI	CTGGAG	2 cut(s)	302, 330
HaeIII	GGCC	2 cut(s)	889, 1039
HapII	CCGG	4 cut(s)	19, 219, 293, 602
Hin1II	CATG	4 cut(s)	353, 503, 531, 1143
HindIII	AAGCTT	1 cut(s)	1009
HinfI	GANTC	5 cut(s)	40, 222, 278, 353, 620
HpaII	CCGG	4 cut(s)	19, 219, 293, 602
HphI	GGTGA	3 cut(s)	241, 923, 1016
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	7 cut(s)	51, 123, 277, 420, 660, 731, 885
Hpy188III	TCNNGA	6 cut(s)	219, 309, 319, 350, 357, 1133
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	6 cut(s)	105, 236, 406, 629, 749, 758
HpyCH4III	ACNGT	3 cut(s)	327, 537, 1102
HpyCH4V	TGCA	5 cut(s)	173, 519, 680, 818, 1067
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	6 cut(s)	48, 476, 884, 978, 1093, 1131
Hsp92II	CATG	4 cut(s)	353, 503, 531, 1143
Kpn2I	TCCGGA	1 cut(s)	218
Kzo9I	GATC	6 cut(s)	51, 260, 364, 839, 896, 1127
LguI	GCTCTTC	2 cut(s)	344, 390
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	2 cut(s)	346, 1069
LweI	GCATC	2 cut(s)	370, 805
MaeI	CTAG	2 cut(s)	197, 798
MaeIII	GTNAC	3 cut(s)	327, 531, 827
MalI	GATC	6 cut(s)	53, 262, 366, 841, 898, 1129
MboI	GATC	6 cut(s)	51, 260, 364, 839, 896, 1127
MboII	GAAGA	9 cut(s)	81, 135, 141, 172, 255, 331, 338, 377, 641
MflI	RGATCY	2 cut(s)	260, 1127
MhlI	GDGCHC	2 cut(s)	49, 60
MluCI	AATT	9 cut(s)	162, 174, 189, 296, 541, 808, 955, 990, 1052
MmeI	TCCRAC	2 cut(s)	306, 984
MroI	TCCGGA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	4 cut(s)	19, 219, 293, 602
MspR9I	CCNGG	3 cut(s)	293, 582, 602
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	1 cut(s)	481
NciI	CCSGG	2 cut(s)	293, 602
NdeII	GATC	6 cut(s)	51, 260, 364, 839, 896, 1127
NlaIII	CATG	4 cut(s)	353, 503, 531, 1143
PagI	TCATGA	1 cut(s)	349
PciSI	GCTCTTC	2 cut(s)	344, 390
PfeI	GAWTC	5 cut(s)	40, 222, 278, 353, 620
PflMI	CCANNNNNTGG	1 cut(s)	853
PkrI	GCNGC	2 cut(s)	336, 1084
PsiI	TTATAA	1 cut(s)	402
Psp124BI	GAGCTC	2 cut(s)	49, 60
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	469, 888
PstI	CTGCAG	2 cut(s)	682, 1069
PsuI	RGATCY	2 cut(s)	260, 1127
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
RseI	CAYNNNNRTG	1 cut(s)	348
SacI	GAGCTC	2 cut(s)	49, 60
SapI	GCTCTTC	2 cut(s)	344, 390
SatI	GCNGC	2 cut(s)	335, 1083
Sau3AI	GATC	6 cut(s)	51, 260, 364, 839, 896, 1127
Sau96I	GGNCC	2 cut(s)	469, 888
ScaI	AGTACT	1 cut(s)	736
ScrFI	CCNGG	3 cut(s)	293, 582, 602
SduI	GDGCHC	2 cut(s)	49, 60
SfaNI	GCATC	2 cut(s)	370, 805
SfcI	CTRYAG	2 cut(s)	678, 1065
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	348
SpeI	ACTAGT	1 cut(s)	797
Sse9I	AATT	9 cut(s)	162, 174, 189, 296, 541, 808, 955, 990, 1052
SspMI	CTAG	2 cut(s)	197, 798
SstI	GAGCTC	2 cut(s)	49, 60
StyD4I	CCNGG	3 cut(s)	291, 580, 600
StyI	CCWWGG	1 cut(s)	1112
TaaI	ACNGT	3 cut(s)	327, 537, 1102
TaqI	TCGA	5 cut(s)	43, 54, 269, 623, 753
TasI	AATT	9 cut(s)	162, 174, 189, 296, 541, 808, 955, 990, 1052
TatI	WGTACW	1 cut(s)	734
TfiI	GAWTC	5 cut(s)	40, 222, 278, 353, 620
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	2 cut(s)	334, 1082
TspDTI	ATGAA	6 cut(s)	135, 172, 255, 338, 364, 777
TspRI	CASTG	1 cut(s)	105
Van91I	CCANNNNNTGG	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	955, 1052
XspI	CTAG	2 cut(s)	197, 798
ZrmI	AGTACT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.