FvH4_4g36470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014731
Physical Location & Seq
Forward (+)
33401962 .. 33405896
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36470.t1

Sequence Viewer

Length: 468 bp
ATGACAGAGGAGACATTAACGCAGAGTAATGACACTAGTGCTTCAGATCATAGAACTCCGAGTGTTGTGTTGGATATTGAAAGCCTAGCACAATCCTCAGATTTCTGCTCAGGGAGCCCCAAAATGACTAGGGCACTCTCACGGAAATGGTCGTATCGAGCAGAGAGATCAATTAGTACTGATCAGGAGGAAGACACTGATCATGAATCAACAAAGAAACTTCTAGTGAAAGTGAACTCTCAGTTGGAGCCCTTGAAGCAGCCATTGATCACCGCAAAATCGTTGCCGTCAACCTCAACTACTCTAATGGGCACTAATCTGCTGGACACAGGGGATGGACGGAGCAAGAGGTTTAATCGCTTCATGACCATTAACCCTCGAAAGATCCTTCTCATTTTTGCAACCATGTCCAGTATGGGGACATTAATCTTGATATACTTCACACTCGCCATTAACCGAACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.31

Weight (kDa)

8.79

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014731)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36470
malus_domestica MD13G1009000.v1.1 MD16G1007000.v1.1
prunus_persica Prupe.1G343700_v2.0.a1
pyrus_communis pycom13g00760 pycom16g00660
rosa_chinensis RchiOBHm_Chr4g0446231
rosa_laevigata RLG00000005679
rosa_multiflora Rmu_sc0002266.1_g000011 Rmu_sc0014728.1_g000007
rosa_roxburghii Rroxscaffold_5G00386630
rosa_rugosa Rorug04G0368500
rosa_samantha Rh4AG430800 Rh4BG440200 Rh4CG457500 Rh4DG438700
rosa_wichuraiana Rw4G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AclWI GGATC 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 417
AgsI TTSAA 2 cut(s) 80, 256
AhlI ACTAGT 1 cut(s) 35
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 259
AseI ATTAAT 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 262
BaeGI GKGCMC 2 cut(s) 136, 314
BanII GRGCYC 2 cut(s) 119, 252
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 3 cut(s) 181, 199, 267
BcoDI GTCTC 1 cut(s) 5
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 4 cut(s) 36, 86, 129, 224
BisI GCNGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 261
BmcAI AGTACT 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 116, 249
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMII CTCAG 3 cut(s) 111, 123, 254
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 2 cut(s) 136, 314
BseXI GCAGC 1 cut(s) 271
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 433
Bsp1286I GDGCHC 4 cut(s) 119, 136, 252, 314
Bsp143I GATC 6 cut(s) 46, 167, 181, 199, 267, 384
BspACI CCGC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 110, 122, 253
BspHI TCATGA 2 cut(s) 202, 363
BspLI GGNNCC 2 cut(s) 116, 249
BspPI GGATC 1 cut(s) 379
BsrI ACTGG 1 cut(s) 411
BssMI GATC 6 cut(s) 46, 167, 181, 199, 267, 384
Bst4CI ACNGT 1 cut(s) 463
BstDEI CTNAG 3 cut(s) 97, 109, 240
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 6 cut(s) 49, 170, 184, 202, 270, 387
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 6 cut(s) 46, 167, 181, 199, 267, 384
BstMWI GCNNNNNNNGC 2 cut(s) 114, 256
BstSLI GKGCMC 2 cut(s) 136, 314
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 195
CciI TCATGA 2 cut(s) 202, 363
Csp6I GTAC 1 cut(s) 177
CviAII CATG 3 cut(s) 203, 364, 406
CviJI RGCY 4 cut(s) 84, 117, 250, 262
CviKI_1 RGCY 4 cut(s) 84, 117, 250, 262
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 3 cut(s) 97, 109, 240
DpnI GATC 6 cut(s) 48, 169, 183, 201, 269, 386
DpnII GATC 6 cut(s) 46, 167, 181, 199, 267, 384
Eco24I GRGCYC 2 cut(s) 119, 252
Eco57I CTGAAG 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 119, 252
FaeI CATG 3 cut(s) 206, 367, 409
FaiI YATR 6 cut(s) 51, 204, 365, 407, 416, 436
FaqI GGGAC 1 cut(s) 433
FatI CATG 3 cut(s) 202, 363, 405
FbaI TGATCA 3 cut(s) 181, 199, 267
Fnu4HI GCNGC 1 cut(s) 260
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 2 cut(s) 119, 252
Fsp4HI GCNGC 1 cut(s) 260
FspBI CTAG 4 cut(s) 36, 86, 129, 224
GluI GCNGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 206, 367, 409
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 1 cut(s) 206
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 235, 291
Hpy188I TCNGA 3 cut(s) 46, 60, 100
Hpy188III TCNNGA 4 cut(s) 185, 203, 364, 430
Hpy8I GTNNAC 2 cut(s) 235, 291
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 256
HpyF3I CTNAG 3 cut(s) 97, 109, 240
Hsp92II CATG 3 cut(s) 206, 367, 409
Ksp22I TGATCA 3 cut(s) 181, 199, 267
Kzo9I GATC 6 cut(s) 46, 167, 181, 199, 267, 384
LmnI GCTCC 3 cut(s) 114, 247, 342
LpnPI CCDG 5 cut(s) 96, 170, 308, 315, 424
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 4 cut(s) 36, 86, 129, 224
MalI GATC 6 cut(s) 48, 169, 183, 201, 269, 386
MboI GATC 6 cut(s) 46, 167, 181, 199, 267, 384
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 4 cut(s) 119, 136, 252, 314
MluCI AATT 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 51, 225
MnlI CCTC 5 cut(s) 106, 181, 304, 342, 387
MseI TTAA 5 cut(s) 17, 354, 372, 425, 453
MslI CAYNNNNRTG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 114, 256
NdeII GATC 6 cut(s) 46, 167, 181, 199, 267, 384
NlaIII CATG 3 cut(s) 206, 367, 409
NlaIV GGNNCC 2 cut(s) 116, 249
PagI TCATGA 2 cut(s) 202, 363
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 261
PshBI ATTAAT 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 116, 249
PsuI RGATCY 1 cut(s) 384
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 5 cut(s) 17, 354, 372, 425, 453
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 6 cut(s) 46, 167, 181, 199, 267, 384
ScaI AGTACT 1 cut(s) 178
SduI GDGCHC 4 cut(s) 119, 136, 252, 314
SetI ASST 2 cut(s) 296, 353
SmiMI CAYNNNNRTG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 1 cut(s) 171
SsiI CCGC 1 cut(s) 273
SspMI CTAG 4 cut(s) 36, 86, 129, 224
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 157, 379
TasI AATT 1 cut(s) 171
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 5 cut(s) 17, 354, 372, 425, 453
Tru9I TTAA 5 cut(s) 17, 354, 372, 425, 453
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 219, 352
TspGWI ACGGA 2 cut(s) 157, 355
TspRI CASTG 1 cut(s) 202
VspI ATTAAT 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XspI CTAG 4 cut(s) 36, 86, 129, 224
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.