Rh4CG457500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014731
Physical Location & Seq
Forward (+)
68922167 .. 68925134
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG457500.1

Sequence Viewer

Length: 471 bp
ATGGCGGAGGAGACAATATTAACACAGAATAATGACACTAGTGCTTCAGATCATAGAACTCCAAGTGTTGTGTTGGATATTGAGAGCCTTGCACAATCCTCAGATTTCTGCTCAGGGAGCCCCAAAATGACTAGGGCACTCTCGCGGAAATGGTCTTATCGAGCAGAGAGATCGATTAACACTGATCAGGAGGAAGACACAGATCATGAACCAACAAAGAAACTTCTAGTGAAAGTGAACTCTCAGTTGGAGACCTTGAAGCCGCCATTGATCACCTCAAAATCATTGCCGTCAACCTCACCTACTCTAATGGGTACTAATCTGCTGGATACAGGGGATGGTCGGAGCAAGAGGTTTAATCGCTTTATGACCATCAACCCTCGGAAGATCCTTCTCATATTTGCAACCATGTCCAGTATGGGCACATTAATCTTGATATACTTCACACTCGCCATTAACCGGACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

8.79

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014731)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36470
malus_domestica MD13G1009000.v1.1 MD16G1007000.v1.1
prunus_persica Prupe.1G343700_v2.0.a1
pyrus_communis pycom13g00760 pycom16g00660
rosa_chinensis RchiOBHm_Chr4g0446231
rosa_laevigata RLG00000005679
rosa_multiflora Rmu_sc0002266.1_g000011 Rmu_sc0014728.1_g000007
rosa_roxburghii Rroxscaffold_5G00386630
rosa_rugosa Rorug04G0368500
rosa_samantha Rh4AG430800 Rh4BG440200 Rh4CG457500 Rh4DG438700
rosa_wichuraiana Rw4G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 145
AciI CCGC 3 cut(s) 5, 145, 263
AclWI GGATC 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 459
AgsI TTSAA 1 cut(s) 259
AhlI ACTAGT 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
Alw26I GTCTC 2 cut(s) 5, 245
AlwI GGATC 1 cut(s) 382
AseI ATTAAT 1 cut(s) 428
AsuHPI GGTGA 2 cut(s) 265, 291
BaeGI GKGCMC 2 cut(s) 139, 425
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 2 cut(s) 332, 380
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 2 cut(s) 184, 270
BcoDI GTCTC 2 cut(s) 5, 245
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 3 cut(s) 39, 132, 227
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 112
Bsa29I ATCGAT 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 380
BsaWI WCCGGW 1 cut(s) 459
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 284
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 3 cut(s) 114, 126, 257
BseNI ACTGG 1 cut(s) 414
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 2 cut(s) 139, 425
Bsh1236I CGCG 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 173
BsiSI CCGG 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 2 cut(s) 5, 245
Bso31I GGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 122, 139, 425
Bsp143I GATC 6 cut(s) 49, 170, 184, 202, 270, 387
BspACI CCGC 3 cut(s) 5, 145, 263
BspCNI CTCAG 3 cut(s) 113, 125, 256
BspDI ATCGAT 1 cut(s) 173
BspFNI CGCG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 6 cut(s) 49, 170, 184, 202, 270, 387
Bst4CI ACNGT 1 cut(s) 466
BstDEI CTNAG 3 cut(s) 100, 112, 243
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 145
BstKTI GATC 6 cut(s) 52, 173, 187, 205, 273, 390
BstMAI GTCTC 2 cut(s) 5, 245
BstMBI GATC 6 cut(s) 49, 170, 184, 202, 270, 387
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstSLI GKGCMC 2 cut(s) 139, 425
BstUI CGCG 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
Bsu15I ATCGAT 1 cut(s) 173
BsuI GTATCC 1 cut(s) 322
BsuTUI ATCGAT 1 cut(s) 173
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 180
CciI TCATGA 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 173
Csp6I GTAC 1 cut(s) 315
CviAII CATG 2 cut(s) 206, 409
CviJI RGCY 3 cut(s) 87, 120, 262
CviKI_1 RGCY 3 cut(s) 87, 120, 262
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 3 cut(s) 100, 112, 243
DpnI GATC 6 cut(s) 51, 172, 186, 204, 272, 389
DpnII GATC 6 cut(s) 49, 170, 184, 202, 270, 387
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 122
FaeI CATG 2 cut(s) 209, 412
FaiI YATR 7 cut(s) 54, 207, 368, 398, 410, 419, 439
FatI CATG 2 cut(s) 205, 408
FbaI TGATCA 2 cut(s) 184, 270
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 3 cut(s) 39, 132, 227
GluI GCNGC 1 cut(s) 263
HapII CCGG 1 cut(s) 460
Hin1II CATG 2 cut(s) 209, 412
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HpaII CCGG 1 cut(s) 460
HphI GGTGA 2 cut(s) 265, 291
Hpy166II GTNNAC 2 cut(s) 238, 294
Hpy188I TCNGA 4 cut(s) 49, 103, 345, 384
Hpy188III TCNNGA 3 cut(s) 188, 206, 433
Hpy8I GTNNAC 2 cut(s) 238, 294
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 2 cut(s) 92, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 100, 112, 243
Hsp92II CATG 2 cut(s) 209, 412
Ksp22I TGATCA 2 cut(s) 184, 270
Kzo9I GATC 6 cut(s) 49, 170, 184, 202, 270, 387
LmnI GCTCC 2 cut(s) 117, 345
LpnPI CCDG 5 cut(s) 99, 173, 311, 318, 427
MaeI CTAG 3 cut(s) 39, 132, 227
MalI GATC 6 cut(s) 51, 172, 186, 204, 272, 389
MboI GATC 6 cut(s) 49, 170, 184, 202, 270, 387
MboII GAAGA 2 cut(s) 206, 397
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 3 cut(s) 122, 139, 425
MmeI TCCRAC 3 cut(s) 54, 228, 323
MnlI CCTC 6 cut(s) 109, 184, 286, 307, 345, 390
MseI TTAA 5 cut(s) 20, 177, 357, 428, 456
MspI CCGG 1 cut(s) 460
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 6 cut(s) 49, 170, 184, 202, 270, 387
NlaIII CATG 2 cut(s) 209, 412
NlaIV GGNNCC 1 cut(s) 119
PagI TCATGA 1 cut(s) 205
PkrI GCNGC 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 387
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 5 cut(s) 20, 177, 357, 428, 456
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 6 cut(s) 49, 170, 184, 202, 270, 387
SduI GDGCHC 3 cut(s) 122, 139, 425
SetI ASST 5 cut(s) 257, 278, 299, 304, 356
SpeI ACTAGT 1 cut(s) 38
SsiI CCGC 3 cut(s) 5, 145, 263
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 39, 132, 227
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 160, 173
TauI GCSGC 1 cut(s) 265
Tru1I TTAA 5 cut(s) 20, 177, 357, 428, 456
Tru9I TTAA 5 cut(s) 20, 177, 357, 428, 456
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 1 cut(s) 187
VspI ATTAAT 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XspI CTAG 3 cut(s) 39, 132, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.