Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014731

Physical Location & Seq

Genomic Coordinates Reverse (-)

780614 .. 783561

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005679

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGGAGGAGACATTAACACAGAATAATGACACTAGTTCTTCAGATCATAGAACTCCAAGTGTTGTGTTGGATATTGAGAGCCTTGCACAATCCTCAGATTTCTGCTCAGGGAGCCCCAAAATGACTAGGGCACTCTCGCGGAAATGGTCTTATCGAGCAGAGAGATCGATTAATACTGATCAGGAGGAAGACACGGATCATGAACCAACAAAGAAACTTCTAGTGAAAGTGAACTCTCAGTTGGAGACCTTGAAGCCGCCATTGATCACCTCAAAATCATTGCCGTCAACCTCACCTACTCTAATGGGTACTAATCTGCTGGATACAGGGGATGGACGGAGCAAGAGGTTTAATCGCTTTATGACCATCAACCCTCGGAAGATCCTTCTCATATTTGCAACCATGTCCAGTATGGGCACATTAATCTTGATATACTTCACACTCGCCATTAACCGGACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

8.79

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014731)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36470
malus_domestica	MD13G1009000.v1.1 MD16G1007000.v1.1
prunus_persica	Prupe.1G343700_v2.0.a1
pyrus_communis	pycom13g00760 pycom16g00660
rosa_chinensis	RchiOBHm_Chr4g0446231
rosa_laevigata	RLG00000005679
rosa_multiflora	Rmu_sc0002266.1_g000011 Rmu_sc0014728.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386630
rosa_rugosa	Rorug04G0368500
rosa_samantha	Rh4AG430800 Rh4BG440200 Rh4CG457500 Rh4DG438700
rosa_wichuraiana	Rw4G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	142
AciI	CCGC	3 cut(s)	5, 142, 260
AclWI	GGATC	2 cut(s)	207, 379
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgsI	TTSAA	1 cut(s)	256
AhlI	ACTAGT	1 cut(s)	35
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
Alw26I	GTCTC	2 cut(s)	5, 242
AlwI	GGATC	2 cut(s)	207, 379
AseI	ATTAAT	2 cut(s)	174, 425
AsuHPI	GGTGA	2 cut(s)	262, 288
BaeGI	GKGCMC	2 cut(s)	136, 422
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	198
BccI	CCATC	2 cut(s)	329, 377
BceAI	ACGGC	1 cut(s)	271
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	2 cut(s)	181, 267
BcoDI	GTCTC	2 cut(s)	5, 242
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	3 cut(s)	36, 129, 224
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	111, 123, 254
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	136, 422
Bsh1236I	CGCG	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	2 cut(s)	5, 242
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	119, 136, 422
Bsp143I	GATC	6 cut(s)	46, 167, 181, 199, 267, 384
BspACI	CCGC	3 cut(s)	5, 142, 260
BspCNI	CTCAG	3 cut(s)	110, 122, 253
BspDI	ATCGAT	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	207, 379
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	6 cut(s)	46, 167, 181, 199, 267, 384
Bst4CI	ACNGT	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	97, 109, 240
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	142
BstKTI	GATC	6 cut(s)	49, 170, 184, 202, 270, 387
BstMAI	GTCTC	2 cut(s)	5, 242
BstMBI	GATC	6 cut(s)	46, 167, 181, 199, 267, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSLI	GKGCMC	2 cut(s)	136, 422
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
Bsu15I	ATCGAT	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	319
BsuTUI	ATCGAT	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	340
CciI	TCATGA	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	203, 406
CviJI	RGCY	3 cut(s)	84, 117, 259
CviKI_1	RGCY	3 cut(s)	84, 117, 259
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	3 cut(s)	97, 109, 240
DpnI	GATC	6 cut(s)	48, 169, 183, 201, 269, 386
DpnII	GATC	6 cut(s)	46, 167, 181, 199, 267, 384
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	2 cut(s)	206, 409
FaiI	YATR	7 cut(s)	51, 204, 365, 395, 407, 416, 436
FatI	CATG	2 cut(s)	202, 405
FbaI	TGATCA	2 cut(s)	181, 267
Fnu4HI	GCNGC	1 cut(s)	260
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	3 cut(s)	36, 129, 224
GluI	GCNGC	1 cut(s)	260
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	2 cut(s)	206, 409
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	2 cut(s)	262, 288
Hpy166II	GTNNAC	2 cut(s)	235, 291
Hpy188I	TCNGA	3 cut(s)	46, 100, 381
Hpy188III	TCNNGA	3 cut(s)	185, 203, 430
Hpy8I	GTNNAC	2 cut(s)	235, 291
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	89, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	3 cut(s)	97, 109, 240
Hsp92II	CATG	2 cut(s)	206, 409
Ksp22I	TGATCA	2 cut(s)	181, 267
Kzo9I	GATC	6 cut(s)	46, 167, 181, 199, 267, 384
LmnI	GCTCC	2 cut(s)	114, 342
LpnPI	CCDG	5 cut(s)	96, 170, 308, 315, 424
MaeI	CTAG	3 cut(s)	36, 129, 224
MalI	GATC	6 cut(s)	48, 169, 183, 201, 269, 386
MboI	GATC	6 cut(s)	46, 167, 181, 199, 267, 384
MboII	GAAGA	3 cut(s)	33, 203, 394
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	3 cut(s)	119, 136, 422
MmeI	TCCRAC	2 cut(s)	51, 225
MnlI	CCTC	6 cut(s)	106, 181, 283, 304, 342, 387
MseI	TTAA	5 cut(s)	17, 174, 354, 425, 453
MspI	CCGG	1 cut(s)	457
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	6 cut(s)	46, 167, 181, 199, 267, 384
NlaIII	CATG	2 cut(s)	206, 409
NlaIV	GGNNCC	1 cut(s)	116
PagI	TCATGA	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	261
PshBI	ATTAAT	2 cut(s)	174, 425
PspN4I	GGNNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SaqAI	TTAA	5 cut(s)	17, 174, 354, 425, 453
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	6 cut(s)	46, 167, 181, 199, 267, 384
SduI	GDGCHC	3 cut(s)	119, 136, 422
SetI	ASST	5 cut(s)	254, 275, 296, 301, 353
SpeI	ACTAGT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	5, 142, 260
SspMI	CTAG	3 cut(s)	36, 129, 224
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	157, 170
TauI	GCSGC	1 cut(s)	262
Tru1I	TTAA	5 cut(s)	17, 174, 354, 425, 453
Tru9I	TTAA	5 cut(s)	17, 174, 354, 425, 453
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	2 cut(s)	212, 355
VspI	ATTAAT	2 cut(s)	174, 425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XspI	CTAG	3 cut(s)	36, 129, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.