Rh4BG440200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014731
Physical Location & Seq
Forward (+)
58054318 .. 58058820
4503 bp
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UTR
Exon/CDS
Intron
Rh4BG440200.1

Sequence Viewer

Length: 345 bp
ATGACTAGGGCACTCTCGCGGAAATGGTCTTATCGAGCAGAGAGATCGATTAACACTGATCAGGAGGAAGACACAGATCATGAACCAACAAAGAAACTTCTAGTGAAAGTGAACTCTCAGTTGGAGACCTTGAAGCCGCCATTGATCACCTCAAAATCATTGCCGTCAACCTCACCTACTCTAATGGGTACTAATCTGCTGGATACAGGGGATGGTCGGAGCAAGAGGTTTAATCGCTTTATGACCATCAACCCTCGGAAGATCCTTCTCATATTTGCAACCATGTCCAGTATGGGCACATTAATCTTGATATACTTCACACTCGCCATTAACCGGACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.97

Weight (kDa)

10.15

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014731)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36470
malus_domestica MD13G1009000.v1.1 MD16G1007000.v1.1
prunus_persica Prupe.1G343700_v2.0.a1
pyrus_communis pycom13g00760 pycom16g00660
rosa_chinensis RchiOBHm_Chr4g0446231
rosa_laevigata RLG00000005679
rosa_multiflora Rmu_sc0002266.1_g000011 Rmu_sc0014728.1_g000007
rosa_roxburghii Rroxscaffold_5G00386630
rosa_rugosa Rorug04G0368500
rosa_samantha Rh4AG430800 Rh4BG440200 Rh4CG457500 Rh4DG438700
rosa_wichuraiana Rw4G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 19
AciI CCGC 2 cut(s) 19, 137
AclWI GGATC 1 cut(s) 256
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 256
AseI ATTAAT 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 139, 165
BaeGI GKGCMC 2 cut(s) 13, 299
BbsI GAAGAC 1 cut(s) 75
BccI CCATC 2 cut(s) 206, 254
BceAI ACGGC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciVI GTATCC 1 cut(s) 196
BclI TGATCA 2 cut(s) 58, 144
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 6, 101
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 288
BseSI GKGCMC 2 cut(s) 13, 299
Bsh1236I CGCG 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 47
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 13, 299
Bsp143I GATC 5 cut(s) 44, 58, 76, 144, 261
BspACI CCGC 2 cut(s) 19, 137
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 1 cut(s) 47
BspFNI CGCG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 79
BspPI GGATC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 158
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 5 cut(s) 44, 58, 76, 144, 261
Bst4CI ACNGT 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 19
BstKTI GATC 5 cut(s) 47, 61, 79, 147, 264
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 5 cut(s) 44, 58, 76, 144, 261
BstSLI GKGCMC 2 cut(s) 13, 299
BstUI CGCG 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
Bsu15I ATCGAT 1 cut(s) 47
BsuI GTATCC 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 47
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 54
CciI TCATGA 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 47
Csp6I GTAC 1 cut(s) 189
CviAII CATG 2 cut(s) 80, 283
CviJI RGCY 1 cut(s) 136
CviKI_1 RGCY 1 cut(s) 136
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 117
DpnI GATC 5 cut(s) 46, 60, 78, 146, 263
DpnII GATC 5 cut(s) 44, 58, 76, 144, 261
Eco31I GGTCTC 1 cut(s) 119
FaeI CATG 2 cut(s) 83, 286
FaiI YATR 6 cut(s) 81, 242, 272, 284, 293, 313
FatI CATG 2 cut(s) 79, 282
FbaI TGATCA 2 cut(s) 58, 144
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 2 cut(s) 6, 101
GluI GCNGC 1 cut(s) 137
HapII CCGG 1 cut(s) 334
Hin1II CATG 2 cut(s) 83, 286
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HpaII CCGG 1 cut(s) 334
HphI GGTGA 2 cut(s) 139, 165
Hpy166II GTNNAC 2 cut(s) 112, 168
Hpy188I TCNGA 2 cut(s) 219, 258
Hpy188III TCNNGA 3 cut(s) 62, 80, 307
Hpy8I GTNNAC 2 cut(s) 112, 168
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 2 cut(s) 83, 286
Ksp22I TGATCA 2 cut(s) 58, 144
Kzo9I GATC 5 cut(s) 44, 58, 76, 144, 261
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 47, 185, 192, 301
MaeI CTAG 2 cut(s) 6, 101
MalI GATC 5 cut(s) 46, 60, 78, 146, 263
MboI GATC 5 cut(s) 44, 58, 76, 144, 261
MboII GAAGA 2 cut(s) 80, 271
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 2 cut(s) 13, 299
MmeI TCCRAC 2 cut(s) 102, 197
MnlI CCTC 5 cut(s) 58, 160, 181, 219, 264
MseI TTAA 4 cut(s) 51, 231, 302, 330
MspI CCGG 1 cut(s) 334
MvnI CGCG 1 cut(s) 19
NdeII GATC 5 cut(s) 44, 58, 76, 144, 261
NlaIII CATG 2 cut(s) 83, 286
PagI TCATGA 1 cut(s) 79
PkrI GCNGC 1 cut(s) 138
PshBI ATTAAT 1 cut(s) 302
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SaqAI TTAA 4 cut(s) 51, 231, 302, 330
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 5 cut(s) 44, 58, 76, 144, 261
SduI GDGCHC 2 cut(s) 13, 299
SetI ASST 5 cut(s) 131, 152, 173, 178, 230
SsiI CCGC 2 cut(s) 19, 137
SspMI CTAG 2 cut(s) 6, 101
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 34, 47
TauI GCSGC 1 cut(s) 139
Tru1I TTAA 4 cut(s) 51, 231, 302, 330
Tru9I TTAA 4 cut(s) 51, 231, 302, 330
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 61
VspI ATTAAT 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 2 cut(s) 6, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.