Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014731

Physical Location & Seq

Genomic Coordinates Forward (+)

32222866 .. 32226476

Gene Structure 3611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G343700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACGAGCGGCAGACGCCACACCCACAGACTGATACTAGTGCTTCAGATAGAACTCCCACTGTTGTGTTGGATATTGAGAGCCTTGCACAACCCTCAGATAGAAGCTCAGGAAGCCCCAAAATGACAAGAGCACTCTCAAGAAAATGGTCTTATCGAGCAGAGAGATTTTTTAATACTGACGAGGAAGACACAGATGAACCCTCAAAGAAACTTCTAGTGAAAGTGAACTCTCAGTTGGAGCCCTTGAAGCAGTCATTGATCACCGCAAAAGCAATCTCGGCAGCCTCAAATGCTCTTACAGGCTCCAATCTCATTGACATAGGGGATGGACGGAGCAAGAGGTTGAATCGCTTTATGGCAATCAACCCTCGGAAGATCCTTTTCATATTTGCAACACTGTCCAGTATGGGCACATTAATCCTCATATACTTCACACTGGCCATTAATAGAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.05

Weight (kDa)

9.57

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014731)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36470
malus_domestica	MD13G1009000.v1.1 MD16G1007000.v1.1
prunus_persica	Prupe.1G343700_v2.0.a1
pyrus_communis	pycom13g00760 pycom16g00660
rosa_chinensis	RchiOBHm_Chr4g0446231
rosa_laevigata	RLG00000005679
rosa_multiflora	Rmu_sc0002266.1_g000011 Rmu_sc0014728.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386630
rosa_rugosa	Rorug04G0368500
rosa_samantha	Rh4AG430800 Rh4BG440200 Rh4CG457500 Rh4DG438700
rosa_wichuraiana	Rw4G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	10
AciI	CCGC	2 cut(s)	10, 267
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	250, 349
AhlI	ACTAGT	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AleI	CACNNNNGTG	1 cut(s)	65
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw21I	GWGCWC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	284
AseI	ATTAAT	2 cut(s)	419, 447
AsuHPI	GGTGA	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	2 cut(s)	39, 218
BisI	GCNGC	2 cut(s)	11, 285
BlsI	GCNGC	2 cut(s)	12, 286
BmiI	GGNNCC	2 cut(s)	243, 307
BpiI	GAAGAC	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	405, 444
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	334
BseMII	CTCAG	3 cut(s)	111, 123, 248
BseNI	ACTGG	2 cut(s)	405, 444
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	3 cut(s)	136, 246, 416
Bsp143I	GATC	2 cut(s)	261, 378
BspACI	CCGC	2 cut(s)	10, 267
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	3 cut(s)	110, 122, 247
BspLI	GGNNCC	2 cut(s)	243, 307
BspPI	GGATC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	405, 444
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	2 cut(s)	261, 378
BssNI	GRCGYC	1 cut(s)	17
Bst4CI	ACNGT	3 cut(s)	64, 402, 457
BstACI	GRCGYC	1 cut(s)	17
BstDEI	CTNAG	3 cut(s)	97, 109, 234
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	2 cut(s)	264, 381
BstMBI	GATC	2 cut(s)	261, 378
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 114, 250, 281, 293
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	3 cut(s)	60, 398, 437
CseI	GACGC	1 cut(s)	25
CviJI	RGCY	7 cut(s)	84, 108, 117, 244, 287, 306, 443
CviKI_1	RGCY	7 cut(s)	84, 108, 117, 244, 287, 306, 443
DdeI	CTNAG	3 cut(s)	97, 109, 234
DpnI	GATC	2 cut(s)	263, 380
DpnII	GATC	2 cut(s)	261, 378
EaeI	YGGCCR	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	246
FaiI	YATR	6 cut(s)	323, 359, 389, 410, 428, 430
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	11, 285
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	11, 285
FspBI	CTAG	2 cut(s)	39, 218
GluI	GCNGC	2 cut(s)	11, 285
HaeIII	GGCC	1 cut(s)	443
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	49, 100, 375
Hpy188III	TCNNGA	2 cut(s)	111, 141
Hpy8I	GTNNAC	1 cut(s)	229
HpyCH4III	ACNGT	3 cut(s)	64, 402, 457
HpyCH4V	TGCA	2 cut(s)	89, 395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 114, 250, 281, 293
HpyF3I	CTNAG	3 cut(s)	97, 109, 234
Hsp92I	GRCGYC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	261, 378
LmnI	GCTCC	3 cut(s)	241, 311, 336
LpnPI	CCDG	4 cut(s)	96, 288, 418, 425
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	2 cut(s)	39, 218
MalI	GATC	2 cut(s)	263, 380
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	2 cut(s)	261, 378
MboII	GAAGA	2 cut(s)	200, 388
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	3 cut(s)	136, 246, 416
MlsI	TGGCCA	1 cut(s)	443
MluNI	TGGCCA	1 cut(s)	443
MmeI	TCCRAC	2 cut(s)	51, 219
MnlI	CCTC	7 cut(s)	106, 178, 214, 298, 336, 381, 434
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	3 cut(s)	174, 419, 447
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	443
MwoI	GCNNNNNNNGC	5 cut(s)	16, 114, 250, 281, 293
NdeII	GATC	2 cut(s)	261, 378
NlaIV	GGNNCC	2 cut(s)	243, 307
NmeAIII	GCCGAG	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	12, 286
PshBI	ATTAAT	2 cut(s)	419, 447
PspN4I	GGNNCC	2 cut(s)	243, 307
PsuI	RGATCY	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	174, 419, 447
SatI	GCNGC	2 cut(s)	11, 285
Sau3AI	GATC	2 cut(s)	261, 378
SduI	GDGCHC	3 cut(s)	136, 246, 416
SetI	ASST	2 cut(s)	110, 347
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SpeI	ACTAGT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	10, 267
SspMI	CTAG	2 cut(s)	39, 218
TaaI	ACNGT	3 cut(s)	64, 402, 457
TaqI	TCGA	1 cut(s)	157
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	3 cut(s)	174, 419, 447
Tru9I	TTAA	3 cut(s)	174, 419, 447
TscAI	CASTG	3 cut(s)	67, 405, 444
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	213, 376
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	3 cut(s)	67, 405, 444
VspI	ATTAAT	2 cut(s)	419, 447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XspI	CTAG	2 cut(s)	39, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.