Rroxscaffold_5G00386630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014731
Physical Location & Seq
Forward (+)
65469767 .. 65474128
4362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386630.1

Sequence Viewer

Length: 474 bp
ATGATCAATTTGAAGTTTTCAACTTTTAAGAATAATGACACTAGTGCTTCAGATCATAGAACTCCAAGTGTTGTCTTGGATATTGAGAGCCTTGCACAATCCTCAGATTTCTGCTCAGGGAGCCCCAAAATGACTAGGGCACTCTCGCGGAAATGGTCTTATCGAGCAGAGAGATCGATTAATACTGATCAGGAGGAAGACACAGATCATGAACCAACAAAGAAACTTCTAGTGAAAGTGAACTCTCAGTTGGAGACCTTGAAGCCGCCATTGATCACCTCAAAATCATTGCCGTCAACCTCACCTACTCTAATGGGTACAAATCTGCTGGATACAGGGGATGGACGGAGCAAGAGGTTTAATCGCTTTATGACCATCAACCCTCGGAAGATCCTTCTCATATTTGCAACCATGTCCAGTATGGGCACATTAATCTTGATATACTTCACACTCGCCATTAACCGGACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.63

Weight (kDa)

9.67

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014731)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36470
malus_domestica MD13G1009000.v1.1 MD16G1007000.v1.1
prunus_persica Prupe.1G343700_v2.0.a1
pyrus_communis pycom13g00760 pycom16g00660
rosa_chinensis RchiOBHm_Chr4g0446231
rosa_laevigata RLG00000005679
rosa_multiflora Rmu_sc0002266.1_g000011 Rmu_sc0014728.1_g000007
rosa_roxburghii Rroxscaffold_5G00386630
rosa_rugosa Rorug04G0368500
rosa_samantha Rh4AG430800 Rh4BG440200 Rh4CG457500 Rh4DG438700
rosa_wichuraiana Rw4G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 148
AciI CCGC 2 cut(s) 148, 266
AclWI GGATC 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 3 cut(s) 13, 21, 262
AhlI ACTAGT 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 385
AseI ATTAAT 2 cut(s) 180, 431
AsuHPI GGTGA 2 cut(s) 268, 294
BaeGI GKGCMC 2 cut(s) 142, 428
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 204
BccI CCATC 2 cut(s) 335, 383
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 3 cut(s) 3, 187, 273
BcoDI GTCTC 1 cut(s) 248
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 3 cut(s) 42, 135, 230
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 462
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse1I ACTGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 3 cut(s) 117, 129, 260
BseNI ACTGG 1 cut(s) 417
BseSI GKGCMC 2 cut(s) 142, 428
Bsh1236I CGCG 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 176
BsiSI CCGG 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 3 cut(s) 125, 142, 428
Bsp143I GATC 7 cut(s) 3, 52, 173, 187, 205, 273, 390
BspACI CCGC 2 cut(s) 148, 266
BspCNI CTCAG 3 cut(s) 116, 128, 259
BspDI ATCGAT 1 cut(s) 176
BspFNI CGCG 1 cut(s) 148
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 385
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 287
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 7 cut(s) 3, 52, 173, 187, 205, 273, 390
Bst4CI ACNGT 1 cut(s) 469
BstDEI CTNAG 3 cut(s) 103, 115, 246
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 148
BstKTI GATC 7 cut(s) 6, 55, 176, 190, 208, 276, 393
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 7 cut(s) 3, 52, 173, 187, 205, 273, 390
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstSLI GKGCMC 2 cut(s) 142, 428
BstUI CGCG 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
Bsu15I ATCGAT 1 cut(s) 176
BsuI GTATCC 1 cut(s) 325
BsuTUI ATCGAT 1 cut(s) 176
BtsCI GGATG 1 cut(s) 346
CciI TCATGA 1 cut(s) 208
ClaI ATCGAT 1 cut(s) 176
Csp6I GTAC 1 cut(s) 318
CviAII CATG 2 cut(s) 209, 412
CviJI RGCY 3 cut(s) 90, 123, 265
CviKI_1 RGCY 3 cut(s) 90, 123, 265
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 3 cut(s) 103, 115, 246
DpnI GATC 7 cut(s) 5, 54, 175, 189, 207, 275, 392
DpnII GATC 7 cut(s) 3, 52, 173, 187, 205, 273, 390
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 212, 415
FaiI YATR 7 cut(s) 57, 210, 371, 401, 413, 422, 442
FatI CATG 2 cut(s) 208, 411
FbaI TGATCA 3 cut(s) 3, 187, 273
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 3 cut(s) 42, 135, 230
GluI GCNGC 1 cut(s) 266
HapII CCGG 1 cut(s) 463
Hin1II CATG 2 cut(s) 212, 415
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HpaII CCGG 1 cut(s) 463
HphI GGTGA 2 cut(s) 268, 294
Hpy166II GTNNAC 2 cut(s) 241, 297
Hpy188I TCNGA 3 cut(s) 52, 106, 387
Hpy188III TCNNGA 3 cut(s) 191, 209, 436
Hpy8I GTNNAC 2 cut(s) 241, 297
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 2 cut(s) 95, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 3 cut(s) 103, 115, 246
Hsp92II CATG 2 cut(s) 212, 415
Ksp22I TGATCA 3 cut(s) 3, 187, 273
Kzo9I GATC 7 cut(s) 3, 52, 173, 187, 205, 273, 390
LmnI GCTCC 2 cut(s) 120, 348
LpnPI CCDG 5 cut(s) 102, 176, 314, 321, 430
MaeI CTAG 3 cut(s) 42, 135, 230
MalI GATC 7 cut(s) 5, 54, 175, 189, 207, 275, 392
MboI GATC 7 cut(s) 3, 52, 173, 187, 205, 273, 390
MboII GAAGA 2 cut(s) 209, 400
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 3 cut(s) 125, 142, 428
MluCI AATT 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 6 cut(s) 112, 187, 289, 310, 348, 393
MseI TTAA 5 cut(s) 27, 180, 360, 431, 459
MspI CCGG 1 cut(s) 463
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 7 cut(s) 3, 52, 173, 187, 205, 273, 390
NlaIII CATG 2 cut(s) 212, 415
NlaIV GGNNCC 1 cut(s) 122
PagI TCATGA 1 cut(s) 208
PkrI GCNGC 1 cut(s) 267
PshBI ATTAAT 2 cut(s) 180, 431
PspN4I GGNNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 5 cut(s) 27, 180, 360, 431, 459
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 7 cut(s) 3, 52, 173, 187, 205, 273, 390
SduI GDGCHC 3 cut(s) 125, 142, 428
SetI ASST 5 cut(s) 260, 281, 302, 307, 359
SpeI ACTAGT 1 cut(s) 41
Sse9I AATT 1 cut(s) 7
SsiI CCGC 2 cut(s) 148, 266
SspMI CTAG 3 cut(s) 42, 135, 230
TaaI ACNGT 1 cut(s) 469
TaqI TCGA 2 cut(s) 163, 176
TasI AATT 1 cut(s) 7
TauI GCSGC 1 cut(s) 268
Tru1I TTAA 5 cut(s) 27, 180, 360, 431, 459
Tru9I TTAA 5 cut(s) 27, 180, 360, 431, 459
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 361
VspI ATTAAT 2 cut(s) 180, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XspI CTAG 3 cut(s) 42, 135, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.