MD16G1007000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014731
Physical Location & Seq
Reverse (-)
532902 .. 536454
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1007000.v1.1.491

Sequence Viewer

Length: 456 bp
ATGATTAATTTCTCTGAGAAATCAATGGAGAGAGATTTTGAGAGGGAGGAGCAGACCGGACAGACTGATACAACTGCTTCAGATAGAACTCACACCGTTGTGTTGGATATTGAGAGCCTTACACAACCCTCAGATAGAAGCTCCGGAAGCCCCAAAATGACAGGAGCGCTCTCAAGAAAATGGTTTTATCGAGCAGAGCGATTGATGAATACTGACGAGGAAGACACGGATGAGCCACCAAAGAAACTTCTGGTGAAAGTGAACTCTCAGCTGGAACCGTTGAAGAAGTCACTGATCACCATAAAATCGTTTGGGTCAACCTCAACCGTGCTTACAGGCACGAATCGCTTTATGGCCATTAACCCTCGAAAGATCCTTTTCATATTTGCGACAGTGTCCAGTATGGGTACATTAATCCTCATATACTTCACACTGGCCATTAATAGAACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.1

Weight (kDa)

7.97

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014731)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36470
malus_domestica MD13G1009000.v1.1 MD16G1007000.v1.1
prunus_persica Prupe.1G343700_v2.0.a1
pyrus_communis pycom13g00760 pycom16g00660
rosa_chinensis RchiOBHm_Chr4g0446231
rosa_laevigata RLG00000005679
rosa_multiflora Rmu_sc0002266.1_g000011 Rmu_sc0014728.1_g000007
rosa_roxburghii Rroxscaffold_5G00386630
rosa_rugosa Rorug04G0368500
rosa_samantha Rh4AG430800 Rh4BG440200 Rh4CG457500 Rh4DG438700
rosa_wichuraiana Rw4G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 143
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 2 cut(s) 354, 435
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 1 cut(s) 409
AfeI AGCGCT 1 cut(s) 168
AgsI TTSAA 1 cut(s) 283
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 2 cut(s) 141, 271
AluI AGCT 2 cut(s) 141, 271
AlwI GGATC 1 cut(s) 367
Aor13HI TCCGGA 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 168
AoxI GGCC 2 cut(s) 354, 435
AseI ATTAAT 3 cut(s) 6, 413, 441
AspLEI GCGC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 265, 289
BalI TGGCCA 2 cut(s) 356, 437
BbsI GAAGAC 1 cut(s) 228
BclI TGATCA 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 157
BsaWI WCCGGW 2 cut(s) 56, 143
Bse1I ACTGG 2 cut(s) 399, 438
BseAI TCCGGA 1 cut(s) 143
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 3 cut(s) 6, 144, 281
BseNI ACTGG 2 cut(s) 399, 438
BseRI GAGGAG 1 cut(s) 62
BshFI GGCC 2 cut(s) 356, 437
BsiSI CCGG 2 cut(s) 57, 144
BsnI GGCC 2 cut(s) 356, 437
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 2 cut(s) 294, 372
BspANI GGCC 2 cut(s) 356, 437
BspCNI CTCAG 3 cut(s) 7, 143, 280
BspEI TCCGGA 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 367
BsrI ACTGG 2 cut(s) 399, 438
BssMI GATC 2 cut(s) 294, 372
Bst4CI ACNGT 4 cut(s) 97, 279, 328, 394
BstDEI CTNAG 3 cut(s) 15, 130, 267
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 2 cut(s) 297, 375
BstMBI GATC 2 cut(s) 294, 372
BstMWI GCNNNNNNNGC 2 cut(s) 147, 345
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 2 cut(s) 356, 437
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 3 cut(s) 290, 399, 431
CfoI GCGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 408
CviJI RGCY 7 cut(s) 117, 141, 150, 235, 271, 356, 437
CviKI_1 RGCY 7 cut(s) 117, 141, 150, 235, 271, 356, 437
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 3 cut(s) 15, 130, 267
DpnI GATC 2 cut(s) 296, 374
DpnII GATC 2 cut(s) 294, 372
EaeI YGGCCR 2 cut(s) 354, 435
Eco47III AGCGCT 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 63
FaiI YATR 6 cut(s) 302, 353, 383, 404, 422, 424
FbaI TGATCA 1 cut(s) 294
FokI GGATG 1 cut(s) 242
GlaI GCGC 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 356, 437
HapII CCGG 2 cut(s) 57, 144
HhaI GCGC 1 cut(s) 169
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 1 cut(s) 343
HpaII CCGG 2 cut(s) 57, 144
HphI GGTGA 2 cut(s) 265, 289
Hpy166II GTNNAC 2 cut(s) 262, 318
Hpy188I TCNGA 3 cut(s) 16, 82, 133
Hpy188III TCNNGA 2 cut(s) 144, 174
Hpy8I GTNNAC 2 cut(s) 262, 318
HpyCH4III ACNGT 4 cut(s) 97, 279, 328, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 345
HpyF3I CTNAG 3 cut(s) 15, 130, 267
HspAI GCGC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 2 cut(s) 294, 372
LmnI GCTCC 3 cut(s) 49, 146, 164
LpnPI CCDG 8 cut(s) 70, 147, 157, 236, 257, 321, 412, 419
MaeIII GTNAC 1 cut(s) 288
MalI GATC 2 cut(s) 296, 374
MboI GATC 2 cut(s) 294, 372
MboII GAAGA 2 cut(s) 233, 295
MflI RGATCY 1 cut(s) 372
MlsI TGGCCA 2 cut(s) 356, 437
MluCI AATT 2 cut(s) 7, 450
MluNI TGGCCA 2 cut(s) 356, 437
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 7 cut(s) 36, 40, 139, 211, 331, 375, 428
Mox20I TGGCCA 2 cut(s) 356, 437
MroI TCCGGA 1 cut(s) 143
MscI TGGCCA 2 cut(s) 356, 437
MseI TTAA 4 cut(s) 6, 360, 413, 441
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 2 cut(s) 356, 437
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 2 cut(s) 57, 144
MwoI GCNNNNNNNGC 2 cut(s) 147, 345
NdeII GATC 2 cut(s) 294, 372
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 288
OliI CACNNNNGTG 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 1 cut(s) 343
PflFI GACNNNGTC 1 cut(s) 394
PshBI ATTAAT 3 cut(s) 6, 413, 441
PspN4I GGNNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 372
PsyI GACNNNGTC 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 4 cut(s) 6, 360, 413, 441
Sau3AI GATC 2 cut(s) 294, 372
SetI ASST 3 cut(s) 143, 273, 323
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 7, 450
TaaI ACNGT 4 cut(s) 97, 279, 328, 394
TaqI TCGA 2 cut(s) 190, 367
TasI AATT 2 cut(s) 7, 450
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 4 cut(s) 6, 360, 413, 441
Tru9I TTAA 4 cut(s) 6, 360, 413, 441
TscAI CASTG 3 cut(s) 297, 399, 438
TseFI GTSAC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 2 cut(s) 221, 370
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 3 cut(s) 297, 399, 438
Tth111I GACNNNGTC 1 cut(s) 394
VspI ATTAAT 3 cut(s) 6, 413, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.