RchiOBHm_Chr4g0446231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014731
Physical Location & Seq
Forward (+)
66487807 .. 66491764
3958 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41375

Sequence Viewer

Length: 468 bp
ATGGCGGAGGAGACATTAACACAGAATAATGACACTAGTGCTTCAGATCATAGAACTCCAAGTGTTGTGTTGGATATTGAGAGCCTTGCACAATCTTCAGATTTCTGCTCAGGGAGCCCCAAAATGACTAGGGCACTCTCGCGGAAATGGTCTTATCGAGCAGAGAGATCGATTAACACTGATCAGGAGGAAGACACAGATCATGAACCAACAAAGAAACTTCTAGTGAAAGTGAACTCTCAGTTGGAGACCTTGAAGCCACCATTGATCACCTCAAAATCATTGCCGTCAACCTCACCTACTCTAATGGGTACTAATCTGCTGGATACAGGGGATGGACGGAGCAAGAGGTTTAATCGCTTTATGACCATCAACCCTCGGAAGATCCTTCTCATATTTGCAACCATGTCCAGTATGGGCACATTAATCTTGATATACTTCACACTCGCCATTAACCGGACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.33

Weight (kDa)

8.79

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014731)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36470
malus_domestica MD13G1009000.v1.1 MD16G1007000.v1.1
prunus_persica Prupe.1G343700_v2.0.a1
pyrus_communis pycom13g00760 pycom16g00660
rosa_chinensis RchiOBHm_Chr4g0446231
rosa_laevigata RLG00000005679
rosa_multiflora Rmu_sc0002266.1_g000011 Rmu_sc0014728.1_g000007
rosa_roxburghii Rroxscaffold_5G00386630
rosa_rugosa Rorug04G0368500
rosa_samantha Rh4AG430800 Rh4BG440200 Rh4CG457500 Rh4DG438700
rosa_wichuraiana Rw4G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 142
AciI CCGC 2 cut(s) 5, 142
AclWI GGATC 1 cut(s) 379
AcuI CTGAAG 2 cut(s) 27, 81
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 1 cut(s) 256
AhlI ACTAGT 1 cut(s) 35
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
Alw26I GTCTC 2 cut(s) 5, 242
AlwI GGATC 1 cut(s) 379
AseI ATTAAT 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 262, 288
BaeGI GKGCMC 2 cut(s) 136, 422
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 2 cut(s) 329, 377
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BciVI GTATCC 1 cut(s) 319
BclI TGATCA 2 cut(s) 181, 267
BcoDI GTCTC 2 cut(s) 5, 242
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 3 cut(s) 36, 129, 224
BfuI GTATCC 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 456
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 2 cut(s) 123, 254
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 2 cut(s) 136, 422
Bsh1236I CGCG 1 cut(s) 142
BshVI ATCGAT 1 cut(s) 170
BsiSI CCGG 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 2 cut(s) 5, 242
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 3 cut(s) 119, 136, 422
Bsp143I GATC 6 cut(s) 46, 167, 181, 199, 267, 384
BspACI CCGC 2 cut(s) 5, 142
BspCNI CTCAG 2 cut(s) 122, 253
BspDI ATCGAT 1 cut(s) 170
BspFNI CGCG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 281
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 6 cut(s) 46, 167, 181, 199, 267, 384
Bst4CI ACNGT 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 109, 240
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 142
BstKTI GATC 6 cut(s) 49, 170, 184, 202, 270, 387
BstMAI GTCTC 2 cut(s) 5, 242
BstMBI GATC 6 cut(s) 46, 167, 181, 199, 267, 384
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSLI GKGCMC 2 cut(s) 136, 422
BstUI CGCG 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
Bsu15I ATCGAT 1 cut(s) 170
BsuI GTATCC 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 170
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 177
CciI TCATGA 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 170
Csp6I GTAC 1 cut(s) 312
CviAII CATG 2 cut(s) 203, 406
CviJI RGCY 3 cut(s) 84, 117, 259
CviKI_1 RGCY 3 cut(s) 84, 117, 259
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 2 cut(s) 109, 240
DpnI GATC 6 cut(s) 48, 169, 183, 201, 269, 386
DpnII GATC 6 cut(s) 46, 167, 181, 199, 267, 384
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 27, 81
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 2 cut(s) 206, 409
FaiI YATR 7 cut(s) 51, 204, 365, 395, 407, 416, 436
FatI CATG 2 cut(s) 202, 405
FbaI TGATCA 2 cut(s) 181, 267
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 119
FspBI CTAG 3 cut(s) 36, 129, 224
HapII CCGG 1 cut(s) 457
Hin1II CATG 2 cut(s) 206, 409
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HpaII CCGG 1 cut(s) 457
HphI GGTGA 2 cut(s) 262, 288
Hpy166II GTNNAC 2 cut(s) 235, 291
Hpy188I TCNGA 3 cut(s) 46, 100, 381
Hpy188III TCNNGA 3 cut(s) 185, 203, 430
Hpy8I GTNNAC 2 cut(s) 235, 291
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 2 cut(s) 89, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 2 cut(s) 109, 240
Hsp92II CATG 2 cut(s) 206, 409
Ksp22I TGATCA 2 cut(s) 181, 267
Kzo9I GATC 6 cut(s) 46, 167, 181, 199, 267, 384
LmnI GCTCC 2 cut(s) 114, 342
LpnPI CCDG 5 cut(s) 96, 170, 308, 315, 424
MaeI CTAG 3 cut(s) 36, 129, 224
MalI GATC 6 cut(s) 48, 169, 183, 201, 269, 386
MboI GATC 6 cut(s) 46, 167, 181, 199, 267, 384
MboII GAAGA 3 cut(s) 87, 203, 394
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 3 cut(s) 119, 136, 422
MmeI TCCRAC 2 cut(s) 51, 225
MnlI CCTC 5 cut(s) 181, 283, 304, 342, 387
MseI TTAA 5 cut(s) 17, 174, 354, 425, 453
MspI CCGG 1 cut(s) 457
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 6 cut(s) 46, 167, 181, 199, 267, 384
NlaIII CATG 2 cut(s) 206, 409
NlaIV GGNNCC 1 cut(s) 116
PagI TCATGA 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 384
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 5 cut(s) 17, 174, 354, 425, 453
Sau3AI GATC 6 cut(s) 46, 167, 181, 199, 267, 384
SduI GDGCHC 3 cut(s) 119, 136, 422
SetI ASST 5 cut(s) 254, 275, 296, 301, 353
SpeI ACTAGT 1 cut(s) 35
SsiI CCGC 2 cut(s) 5, 142
SspMI CTAG 3 cut(s) 36, 129, 224
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 157, 170
Tru1I TTAA 5 cut(s) 17, 174, 354, 425, 453
Tru9I TTAA 5 cut(s) 17, 174, 354, 425, 453
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 1 cut(s) 184
VspI ATTAAT 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XspI CTAG 3 cut(s) 36, 129, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.