FvH4_5g00870

ACT domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
498880 .. 501952
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00870.t1

Sequence Viewer

Length: 1326 bp
ATGGAGTGGGCTGCTTGTCTTGATGAGTATGAGAAACTCGTTTTCCGGATGAACACTCCTAGGGTCGTGATTGACAATGCCGTCTGCTCCAATGCGACTTTAGTCAAGGTCGATAGTGCTAGAAGGCATGGAATTCTTCTCGAAGCTGTTCAGGTCCTCACGGACCTAAACCTCACCATTAAAAAGGCTTATATTTCTTCTGATGGACGGTGGTTCATGGATGTTTTTCATGTTACTGATCAAAACGGGAACAAATTAACGGACGAGAGCGTTATCAACTATATTGAGCAGTCACTTGGAACAATTCACTTTGGGACCTCCAGCTGCTCTAACGGCCTGACAGCCCTGGAGCTGACAGGAACGGACCGTGTTGGTCTTCTTTCTGAGGTATTTGCAGTGCTGGCCGAGCTGCAATGCAATGTGGTTGAGTCTAAGGTCTGGACACACAATGGCAGAATTGCTTCACTGATTTATGTCAAGGACTGTGGTTCGGGTTGTCCAATTGAAGACTCGCAGAAAATTGATACAATTGAAGCGCGGTTGAGGACTGTTCTCAAGGGAGACAATGATATTCGGAGTGCCAAAACTTCAGTTTCCATGGCTGTCACACACACAGAAAGAAGACTCCATCAAATGATGTTTGCAGATCGCGATTACGAGAGGAAGCCCATCCTGCAGCTTTGCACTGATTCTCCAATCGTAACAGTGCAGAATTGGGCTGAAAGGAGTTATTCTGTAGTGAACATTCAGTGCAAGGACCGGGCAAAGCTTTTGTTTGATGTTGTTTGCACAATGACAGATATGGACTATGTGGTTTTTCATGCCACTATTAAAACAGCAGGGGATAGAGCACACATGGAATTTTACATTAGGCATACTGATGGGACCCCAATTAGTTCTGAACCGGAACGACATCGTGTAATCCAATGCTTGCAAGCTGCCATTGAAAGAAGAGCATCTGAGGGTGTGAGACTTGAATTGTGCACTGAGGATAGACCTGGTCTTCTAGCAAAAGTCACTAGAACATTCCGAGAGGCCGGTCTCAATGTGACAAGGGCCGAGATCTCCACCTCGACAGACAAGGCTCAGAACGTTTTCTATGTCACCGATGCAATTGGAAACCCTGCTGATCGAGAAACCATCGATGCAGTGAGGCAGAGAGTAGGGTTAAGTGACTTGAAAGTAAAGGAACTGCCATTGATCTGCCATTCCAAAGGTGAAAGAGAAGAGCAGGCAGTTGGGGTTGGTGGGACAGTGTTGCTATCACTTGGGAGCTTAGTGAGAAGGAATCTGTACAATTTGGGACTCATCAGGTCTTTTTCTTGA

Protein Analysis

442

Amino Acids

49.26

Weight (kDa)

6.16

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT PF01842 115 - 161 4e-06 ACT domain
ACT_6 PF13740 117 - 153 7.4e-06 ACT domain
ACT_ACR9_3rd PF24931 234 - 316 1.3e-08 ACR9-like, ACT-like domain
ACT PF01842 246 - 298 5.1e-06 ACT domain
ACT PF01842 324 - 384 7.8e-13 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012060)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccII CGCG 2 cut(s) 538, 651
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 1 cut(s) 538
AclI AACGTT 1 cut(s) 1092
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 2 cut(s) 132, 860
AcuI CTGAAG 1 cut(s) 573
AfaI GTAC 1 cut(s) 1295
AgsI TTSAA 5 cut(s) 506, 533, 947, 977, 1180
AjnI CCWGG 2 cut(s) 345, 997
AluBI AGCT 8 cut(s) 146, 324, 352, 409, 679, 769, 938, 1275
AluI AGCT 8 cut(s) 146, 324, 352, 409, 679, 769, 938, 1275
Alw21I GWGCWC 2 cut(s) 853, 986
Alw26I GTCTC 3 cut(s) 555, 964, 1046
Alw44I GTGCAC 1 cut(s) 982
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 4 cut(s) 334, 402, 1035, 1056
ApaLI GTGCAC 1 cut(s) 982
ApeKI GCWGC 5 cut(s) 11, 324, 409, 676, 938
ApoI RAATTY 2 cut(s) 132, 860
Asp700I GAANNNNTTC 3 cut(s) 147, 460, 1094
AspA2I CCTAGG 1 cut(s) 59
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 7 cut(s) 154, 163, 315, 364, 757, 885, 1056
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 3 cut(s) 166, 1096, 1229
AvaII GGWCC 6 cut(s) 154, 163, 315, 364, 757, 885
AvrII CCTAGG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 986
BbsI GAAGAC 4 cut(s) 368, 513, 628, 995
Bbv12I GWGCWC 2 cut(s) 853, 986
BbvI GCAGC 4 cut(s) 311, 396, 688, 925
BccI CCATC 5 cut(s) 197, 636, 677, 875, 1148
BceAI ACGGC 2 cut(s) 65, 349
BciT130I CCWGG 2 cut(s) 347, 999
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 3 cut(s) 555, 964, 1046
BfaI CTAG 4 cut(s) 60, 120, 1007, 1020
BfmI CTRYAG 2 cut(s) 674, 735
BglII AGATCT 1 cut(s) 1062
BisI GCNGC 5 cut(s) 12, 325, 410, 677, 939
BlnI CCTAGG 1 cut(s) 59
BlsI GCNGC 5 cut(s) 13, 326, 411, 678, 940
Bme1390I CCNGG 3 cut(s) 347, 761, 999
Bme18I GGWCC 6 cut(s) 154, 163, 315, 364, 757, 885
BmgT120I GGNCC 7 cut(s) 154, 163, 315, 364, 757, 885, 1056
BmiI GGNNCC 3 cut(s) 316, 886, 887
BmrFI CCNGG 3 cut(s) 347, 761, 999
BmsI GCATC 3 cut(s) 965, 1099, 1135
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 4 cut(s) 368, 513, 628, 995
BpmI CTGGAG 2 cut(s) 304, 368
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 761
Bsa29I ATCGAT 1 cut(s) 1143
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 3 cut(s) 59, 345, 597
BsaWI WCCGGW 2 cut(s) 45, 904
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bse118I RCCGGY 1 cut(s) 1037
Bse3DI GCAATG 2 cut(s) 419, 424
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 2 cut(s) 347, 999
BseCI ATCGAT 1 cut(s) 1143
BseDI CCNNGG 3 cut(s) 59, 345, 597
BseGI GGATG 3 cut(s) 54, 226, 669
BseMI GCAATG 2 cut(s) 419, 424
BseMII CTCAG 4 cut(s) 375, 951, 978, 1100
BseSI GKGCMC 1 cut(s) 986
BseXI GCAGC 4 cut(s) 311, 396, 688, 925
BsgI GTGCAG 1 cut(s) 728
Bsh1236I CGCG 2 cut(s) 538, 651
BshFI GGCC 4 cut(s) 336, 404, 1037, 1058
BshVI ATCGAT 1 cut(s) 1143
BsiHKAI GWGCWC 2 cut(s) 853, 986
BsiSI CCGG 4 cut(s) 46, 760, 905, 1038
BslFI GGGAC 4 cut(s) 328, 898, 1264, 1317
BsmAI GTCTC 3 cut(s) 555, 964, 1046
BsmFI GGGAC 4 cut(s) 328, 898, 1264, 1317
BsnI GGCC 4 cut(s) 336, 404, 1037, 1058
Bso31I GGTCTC 1 cut(s) 1046
Bsp1286I GDGCHC 2 cut(s) 853, 986
Bsp13I TCCGGA 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 1293
Bsp143I GATC 5 cut(s) 238, 646, 1062, 1129, 1200
Bsp19I CCATGG 1 cut(s) 597
Bsp68I TCGCGA 1 cut(s) 651
BspACI CCGC 1 cut(s) 538
BspANI GGCC 4 cut(s) 336, 404, 1037, 1058
BspCNI CTCAG 4 cut(s) 376, 952, 979, 1099
BspDI ATCGAT 1 cut(s) 1143
BspEI TCCGGA 1 cut(s) 45
BspFNI CGCG 2 cut(s) 538, 651
BspLI GGNNCC 3 cut(s) 316, 886, 887
BspMAI CTGCAG 1 cut(s) 678
BspQI GCTCTTC 2 cut(s) 946, 1221
BspTNI GGTCTC 1 cut(s) 1046
BsrDI GCAATG 2 cut(s) 419, 424
BsrFI RCCGGY 1 cut(s) 1037
BsrGI TGTACA 1 cut(s) 1293
BssAI RCCGGY 1 cut(s) 1037
BssECI CCNNGG 3 cut(s) 59, 345, 597
BssMI GATC 5 cut(s) 238, 646, 1062, 1129, 1200
BssT1I CCWWGG 2 cut(s) 59, 597
Bst2UI CCWGG 2 cut(s) 347, 999
Bst4CI ACNGT 6 cut(s) 210, 368, 485, 550, 706, 1255
Bst6I CTCTTC 2 cut(s) 946, 1221
BstAUI TGTACA 1 cut(s) 1293
BstC8I GCNNGC 4 cut(s) 402, 932, 936, 1233
BstDEI CTNAG 6 cut(s) 384, 432, 960, 987, 1086, 1276
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 3 cut(s) 54, 226, 669
BstFNI CGCG 2 cut(s) 538, 651
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 5 cut(s) 241, 649, 1065, 1132, 1203
BstMAI GTCTC 3 cut(s) 555, 964, 1046
BstMBI GATC 5 cut(s) 238, 646, 1062, 1129, 1200
BstMWI GCNNNNNNNGC 4 cut(s) 333, 401, 406, 673
BstNI CCWGG 2 cut(s) 347, 999
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 3 cut(s) 345, 759, 997
BstSFI CTRYAG 2 cut(s) 674, 735
BstSLI GKGCMC 1 cut(s) 986
BstUI CGCG 2 cut(s) 538, 651
BstV1I GCAGC 4 cut(s) 311, 396, 688, 925
BstV2I GAAGAC 4 cut(s) 368, 513, 628, 995
BstX2I RGATCY 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 1062
Bsu15I ATCGAT 1 cut(s) 1143
BsuRI GGCC 4 cut(s) 336, 404, 1037, 1058
BsuTUI ATCGAT 1 cut(s) 1143
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 3 cut(s) 54, 226, 669
BtsI GCAGTG 2 cut(s) 402, 1155
BtsIMutI CAGTG 8 cut(s) 402, 464, 684, 711, 755, 984, 1155, 1260
BtuMI TCGCGA 1 cut(s) 651
Cac8I GCNNGC 4 cut(s) 402, 932, 936, 1233
CfoI GCGC 1 cut(s) 538
Cfr10I RCCGGY 1 cut(s) 1037
Cfr13I GGNCC 7 cut(s) 154, 163, 315, 364, 757, 885, 1056
ClaI ATCGAT 1 cut(s) 1143
CpoI CGGWCCG 1 cut(s) 364
CsiI ACCWGGT 1 cut(s) 997
Csp6I GTAC 1 cut(s) 1294
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CspI CGGWCCG 1 cut(s) 364
CviAII CATG 6 cut(s) 128, 217, 230, 598, 821, 856
CviQI GTAC 1 cut(s) 1294
DdeI CTNAG 6 cut(s) 384, 432, 960, 987, 1086, 1276
DpnI GATC 5 cut(s) 240, 648, 1064, 1131, 1202
DpnII GATC 5 cut(s) 238, 646, 1062, 1129, 1200
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 946, 1221
EarI CTCTTC 2 cut(s) 946, 1221
Eco130I CCWWGG 2 cut(s) 59, 597
Eco31I GGTCTC 1 cut(s) 1046
Eco47I GGWCC 6 cut(s) 154, 163, 315, 364, 757, 885
Eco57I CTGAAG 1 cut(s) 573
EcoO109I RGGNCCY 3 cut(s) 154, 315, 885
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 345, 997
EcoT14I CCWWGG 2 cut(s) 59, 597
ErhI CCWWGG 2 cut(s) 59, 597
FaeI CATG 6 cut(s) 131, 220, 233, 601, 824, 859
FaqI GGGAC 4 cut(s) 328, 898, 1264, 1317
FatI CATG 6 cut(s) 127, 216, 229, 597, 820, 855
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 5 cut(s) 12, 325, 410, 677, 939
FokI GGATG 3 cut(s) 61, 233, 656
Fsp4HI GCNGC 5 cut(s) 12, 325, 410, 677, 939
FspBI CTAG 4 cut(s) 60, 120, 1007, 1020
GlaI GCGC 1 cut(s) 537
GluI GCNGC 5 cut(s) 12, 325, 410, 677, 939
GsuI CTGGAG 2 cut(s) 304, 368
HaeIII GGCC 4 cut(s) 336, 404, 1037, 1058
HapII CCGG 4 cut(s) 46, 760, 905, 1038
HhaI GCGC 1 cut(s) 538
Hin1II CATG 6 cut(s) 131, 220, 233, 601, 824, 859
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 6 cut(s) 428, 509, 624, 689, 1288, 1305
HpaII CCGG 4 cut(s) 46, 760, 905, 1038
HphI GGTGA 3 cut(s) 166, 1096, 1229
Hpy166II GTNNAC 2 cut(s) 742, 984
Hpy188I TCNGA 7 cut(s) 202, 385, 576, 901, 961, 1031, 1089
Hpy188III TCNNGA 8 cut(s) 20, 46, 67, 140, 439, 650, 1133, 1323
Hpy8I GTNNAC 2 cut(s) 742, 984
HpyAV CCTTC 2 cut(s) 117, 1278
HpyCH4III ACNGT 6 cut(s) 210, 368, 485, 550, 706, 1255
HpyCH4IV ACGT 1 cut(s) 1092
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 401, 406, 673
HpyF3I CTNAG 6 cut(s) 384, 432, 960, 987, 1086, 1276
HpySE526I ACGT 1 cut(s) 1092
Hsp92II CATG 6 cut(s) 131, 220, 233, 601, 824, 859
HspAI GCGC 1 cut(s) 536
KflI GGGWCCC 1 cut(s) 885
Kpn2I TCCGGA 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 5 cut(s) 238, 646, 1062, 1129, 1200
LguI GCTCTTC 2 cut(s) 946, 1221
LmnI GCTCC 3 cut(s) 92, 349, 1272
Lsp1109I GCAGC 4 cut(s) 311, 396, 688, 925
LweI GCATC 3 cut(s) 965, 1099, 1135
MabI ACCWGGT 1 cut(s) 997
MaeI CTAG 4 cut(s) 60, 120, 1007, 1020
MaeII ACGT 1 cut(s) 1092
MaeIII GTNAC 8 cut(s) 232, 291, 604, 700, 1015, 1048, 1102, 1172
MalI GATC 5 cut(s) 240, 648, 1064, 1131, 1202
MboI GATC 5 cut(s) 238, 646, 1062, 1129, 1200
MboII GAAGA 8 cut(s) 128, 189, 368, 518, 633, 963, 995, 1238
MfeI CAATTG 3 cut(s) 501, 528, 1113
MflI RGATCY 1 cut(s) 1062
MhlI GDGCHC 2 cut(s) 853, 986
MlyI GAGTC 4 cut(s) 437, 503, 618, 1299
MroI TCCGGA 1 cut(s) 45
MroXI GAANNNNTTC 3 cut(s) 147, 460, 1094
MseI TTAA 4 cut(s) 180, 257, 831, 1169
MslI CAYNNNNRTG 1 cut(s) 879
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 4 cut(s) 46, 760, 905, 1038
MspR9I CCNGG 3 cut(s) 347, 761, 999
MunI CAATTG 3 cut(s) 501, 528, 1113
MvaI CCWGG 2 cut(s) 347, 999
MvnI CGCG 2 cut(s) 538, 651
MwoI GCNNNNNNNGC 4 cut(s) 333, 401, 406, 673
NciI CCSGG 1 cut(s) 761
NcoI CCATGG 1 cut(s) 597
NdeII GATC 5 cut(s) 238, 646, 1062, 1129, 1200
NlaIII CATG 6 cut(s) 131, 220, 233, 601, 824, 859
NlaIV GGNNCC 3 cut(s) 316, 886, 887
NmeAIII GCCGAG 2 cut(s) 430, 1084
NmuCI GTSAC 6 cut(s) 291, 604, 1015, 1048, 1102, 1172
NruI TCGCGA 1 cut(s) 651
PciSI GCTCTTC 2 cut(s) 946, 1221
PdmI GAANNNNTTC 3 cut(s) 147, 460, 1094
PfeI GAWTC 2 cut(s) 689, 1288
PflFI GACNNNGTC 1 cut(s) 999
PkrI GCNGC 5 cut(s) 13, 326, 411, 678, 940
PleI GAGTC 4 cut(s) 436, 503, 618, 1299
PpsI GAGTC 4 cut(s) 436, 503, 618, 1299
PpuMI RGGWCCY 3 cut(s) 154, 315, 885
PshAI GACNNNNGTC 1 cut(s) 101
Psp1406I AACGTT 1 cut(s) 1092
Psp5II RGGWCCY 3 cut(s) 154, 315, 885
Psp6I CCWGG 2 cut(s) 345, 997
PspGI CCWGG 2 cut(s) 345, 997
PspN4I GGNNCC 3 cut(s) 316, 886, 887
PspPI GGNCC 7 cut(s) 154, 163, 315, 364, 757, 885, 1056
PspPPI RGGWCCY 3 cut(s) 154, 315, 885
PstI CTGCAG 1 cut(s) 678
PsuI RGATCY 1 cut(s) 1062
PsyI GACNNNGTC 1 cut(s) 999
PvuII CAGCTG 1 cut(s) 324
RruI TCGCGA 1 cut(s) 651
RsaI GTAC 1 cut(s) 1295
RsaNI GTAC 1 cut(s) 1294
RseI CAYNNNNRTG 1 cut(s) 879
Rsr2I CGGWCCG 1 cut(s) 364
RsrII CGGWCCG 1 cut(s) 364
SapI GCTCTTC 2 cut(s) 946, 1221
SaqAI TTAA 4 cut(s) 180, 257, 831, 1169
SatI GCNGC 5 cut(s) 12, 325, 410, 677, 939
Sau3AI GATC 5 cut(s) 238, 646, 1062, 1129, 1200
Sau96I GGNCC 7 cut(s) 154, 163, 315, 364, 757, 885, 1056
SchI GAGTC 4 cut(s) 437, 503, 618, 1299
ScrFI CCNGG 3 cut(s) 347, 761, 999
SduI GDGCHC 2 cut(s) 853, 986
SexAI ACCWGGT 1 cut(s) 997
SfaNI GCATC 3 cut(s) 965, 1099, 1135
SfcI CTRYAG 2 cut(s) 674, 735
SinI GGWCC 6 cut(s) 154, 163, 315, 364, 757, 885
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SsiI CCGC 1 cut(s) 538
SspMI CTAG 4 cut(s) 60, 120, 1007, 1020
StyD4I CCNGG 3 cut(s) 345, 759, 997
StyI CCWWGG 2 cut(s) 59, 597
TaaI ACNGT 6 cut(s) 210, 368, 485, 550, 706, 1255
TaiI ACGT 1 cut(s) 1095
TaqI TCGA 5 cut(s) 111, 141, 1073, 1132, 1143
TatI WGTACW 1 cut(s) 1293
TfiI GAWTC 2 cut(s) 689, 1288
Tru1I TTAA 4 cut(s) 180, 257, 831, 1169
Tru9I TTAA 4 cut(s) 180, 257, 831, 1169
TscAI CASTG 8 cut(s) 402, 471, 691, 711, 755, 991, 1155, 1260
TseFI GTSAC 6 cut(s) 291, 604, 1015, 1048, 1102, 1172
TseI GCWGC 5 cut(s) 11, 324, 409, 676, 938
Tsp45I GTSAC 6 cut(s) 291, 604, 1015, 1048, 1102, 1172
TspDTI ATGAA 4 cut(s) 65, 205, 218, 809
TspGWI ACGGA 3 cut(s) 176, 275, 377
TspRI CASTG 8 cut(s) 402, 471, 691, 711, 755, 991, 1155, 1260
Tth111I GACNNNGTC 1 cut(s) 999
VneI GTGCAC 1 cut(s) 982
VpaK11BI GGWCC 6 cut(s) 154, 163, 315, 364, 757, 885
XapI RAATTY 2 cut(s) 132, 860
XmaJI CCTAGG 1 cut(s) 59
XmnI GAANNNNTTC 3 cut(s) 147, 460, 1094
XspI CTAG 4 cut(s) 60, 120, 1007, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.