MD00G1083000.v1.1

ACT domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
16538095 .. 16540839
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1083000.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGGAGTGTACTGCTTACCTCGACGAATATGAAAAACTCGTCTTCCGGATGAACACTCCCAGGGTCGTGATCGACAATGCCGTCTGCTCCACTGCGACTTTAGTCAAGGTTGACAGCGCTAGAAGGCATGGAATTCTTCTGGAGGCTGTGCAGGTCCTCACGGATCTTAATCTCTCCATTAAAAAAGCTTACATTTCTTCTGATGGTCGCTGGTTCATGGATGTTTTTCATGTTACTGATCAAAACGGGAATAAATTGACGGACGAGAGCGTTATTAACTATATTGAGCAGTCACTTGGAACAATTCATTTTGGATCATCCAACTGTATTAAGGGTCTTACGGCCCTTGAGCTTACCGGGACAGATCGAGTAGGCCTTCTTTCCGAGGTGTTTGCAGTGCTAGCTGACCTGCAATGCAATGTGGTTGAGTCCAAGGTGTGGACGCACAACGGCCGCATTGCTTCACTGATATACGTGAAGGACTGTGATTCCGGGTGCCCTATTGAGGACTCGCAGAAAATTGATAGAATTGAAGCGCGGTTAAGGAATGTTCTCAAGGGCGACAATGATATTAGGAGTGCAAAAACCTCTGTTTCCATGGCGGTTACACACACCGAAAGAAGACTGCATCAAATGATGTTTGCAGATCGTGATTATGATCGAAAGCCCGTTTTGCAGCTTGGCACCGATTTTCCGGTCATAACGGTGCAGAATTGGGCAGAAAGGGGTTACTCCATAGTGAATATTCAGTGCAAGGATAGGGCAAAGCTTTTGTTCGATGTTGTTTGCACGTTGACGGACATGGACTATGTGGTTTTTCATGCCACAATTAAAACATCAGGGGACAGAGGATACATGGAATTTTACATCAGGCACACTGATGGAACCCCGATTAGCTCTGAACCTGAACGACAGCGTGTAATCCAATGCTTACAAGCCGCGGTTCAAAGAAGAGCATCCGAGGGTGTGAGGCTAGAACTATGCACCGAGGATAGGCAAGGTCTTCTAGCATACGTTACAAGAACATTCCGCGAGAACGGTCTTAATGTGACAAGGGCCGAGATTTCCACAACGATGGACAAAGCTCTAAACGTATTCTACGTGACGGATGCAGTCGGAAACCCGGCAGATCCGAAAACCATCGAATCAGTGAGGCAGAAAATCGGGTTGAGTAACTTGAAAGTGAAGGAACTGCCATTGATATACCATCCAAAGGAGGAAAGGGAGGAGCAGCAAGGAGTTGGTGGAGTTGGTGGTGTTGGTGGGGCAGTGTTGTTTTCACTTGGGAGCCTAGTCAGAAGGAATCTCTACAATTTGGGGCTCATCAGATCTCATTCTTGA

Protein Analysis

447

Amino Acids

49.96

Weight (kDa)

6.39

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT PF01842 42 - 87 4e-06 ACT domain
ACT PF01842 115 - 175 9.7e-07 ACT domain
ACT_6 PF13740 117 - 154 1e-05 ACT domain
ACT_ACR9_3rd PF24931 234 - 316 4.7e-08 ACR9-like, ACT-like domain
ACT PF01842 246 - 297 3.9e-07 ACT domain
ACT PF01842 324 - 385 8.7e-07 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012060)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
Acc36I ACCTGC 2 cut(s) 142, 417
AccB1I GGYRCC 2 cut(s) 495, 683
AccB7I CCANNNNNTGG 1 cut(s) 438
AccII CGCG 3 cut(s) 538, 941, 1032
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 6 cut(s) 454, 538, 602, 939, 941, 1030
AclWI GGATC 3 cut(s) 171, 322, 1124
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 2 cut(s) 132, 860
AfaI GTAC 1 cut(s) 10
AfeI AGCGCT 1 cut(s) 118
AfiI CCNNNNNNNGG 4 cut(s) 438, 505, 993, 1213
AgsI TTSAA 3 cut(s) 533, 947, 1180
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 7 cut(s) 188, 352, 404, 679, 769, 897, 1085
AluI AGCT 7 cut(s) 188, 352, 404, 679, 769, 897, 1085
AlwI GGATC 3 cut(s) 171, 322, 1124
Aor13HI TCCGGA 1 cut(s) 45
Aor51HI AGCGCT 1 cut(s) 118
AoxI GGCC 4 cut(s) 342, 373, 451, 1056
ApeKI GCWGC 2 cut(s) 676, 1231
ApoI RAATTY 2 cut(s) 132, 860
AspLEI GCGC 2 cut(s) 119, 538
AspS9I GGNCC 3 cut(s) 154, 343, 1056
AsuC2I CCSGG 3 cut(s) 358, 493, 1124
AsuNHI GCTAGC 1 cut(s) 400
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 500
BanI GGYRCC 2 cut(s) 495, 683
BanII GRGCYC 1 cut(s) 1323
BbsI GAAGAC 3 cut(s) 34, 628, 995
BbvI GCAGC 2 cut(s) 688, 1243
BccI CCATC 5 cut(s) 197, 875, 1069, 1148, 1215
BceAI ACGGC 3 cut(s) 65, 357, 466
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 1 cut(s) 61
BciVI GTATCC 1 cut(s) 845
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 3 cut(s) 358, 493, 1124
BfaI CTAG 5 cut(s) 120, 401, 974, 1007, 1292
BfoI RGCGCY 1 cut(s) 120
BfuAI ACCTGC 2 cut(s) 142, 417
BfuI GTATCC 1 cut(s) 845
BglII AGATCT 1 cut(s) 1328
BisI GCNGC 4 cut(s) 454, 677, 939, 1232
BlsI GCNGC 4 cut(s) 455, 678, 940, 1233
Bme1390I CCNGG 4 cut(s) 61, 358, 493, 1124
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 154, 343, 1056
BmiI GGNNCC 4 cut(s) 497, 685, 886, 1289
BmrFI CCNGG 4 cut(s) 61, 358, 493, 1124
BmsI GCATC 3 cut(s) 637, 965, 1099
BmtI GCTAGC 1 cut(s) 404
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 3 cut(s) 34, 628, 995
BpmI CTGGAG 1 cut(s) 161
BpuEI CTTGAG 2 cut(s) 368, 539
BpuMI CCSGG 3 cut(s) 358, 493, 1124
BsaAI YACGTR 2 cut(s) 475, 1102
BsaBI GATNNNNATC 2 cut(s) 168, 657
BsaJI CCNNGG 8 cut(s) 59, 60, 384, 432, 597, 939, 960, 987
BsaWI WCCGGW 2 cut(s) 45, 694
Bsc4I CCNNNNNNNGG 4 cut(s) 438, 505, 993, 1213
Bse3DI GCAATG 3 cut(s) 419, 424, 456
Bse8I GATNNNNATC 2 cut(s) 168, 657
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 8 cut(s) 59, 60, 384, 432, 597, 939, 960, 987
BseGI GGATG 6 cut(s) 54, 226, 317, 956, 1114, 1207
BseJI GATNNNNATC 2 cut(s) 168, 657
BseLI CCNNNNNNNGG 4 cut(s) 438, 505, 993, 1213
BseMI GCAATG 3 cut(s) 419, 424, 456
BseRI GAGGAG 1 cut(s) 1241
BseSI GKGCMC 1 cut(s) 500
BseX3I CGGCCG 1 cut(s) 451
BseXI GCAGC 2 cut(s) 688, 1243
BsgI GTGCAG 2 cut(s) 170, 728
Bsh1236I CGCG 3 cut(s) 538, 941, 1032
Bsh1285I CGRYCG 1 cut(s) 454
BshFI GGCC 4 cut(s) 344, 375, 453, 1058
BshNI GGYRCC 2 cut(s) 495, 683
BsiEI CGRYCG 1 cut(s) 454
BsiSI CCGG 5 cut(s) 46, 357, 492, 695, 1124
BslFI GGGAC 2 cut(s) 373, 857
BslI CCNNNNNNNGG 4 cut(s) 438, 505, 993, 1213
BsmFI GGGAC 2 cut(s) 373, 857
BsnI GGCC 4 cut(s) 344, 375, 453, 1058
Bsp1286I GDGCHC 2 cut(s) 500, 1323
Bsp13I TCCGGA 1 cut(s) 45
Bsp143I GATC 9 cut(s) 69, 163, 238, 314, 364, 646, 658, 1129, 1328
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 6 cut(s) 454, 538, 602, 939, 941, 1030
BspANI GGCC 4 cut(s) 344, 375, 453, 1058
BspEI TCCGGA 1 cut(s) 45
BspFNI CGCG 3 cut(s) 538, 941, 1032
BspLI GGNNCC 4 cut(s) 497, 685, 886, 1289
BspMI ACCTGC 2 cut(s) 142, 417
BspOI GCTAGC 1 cut(s) 404
BspPI GGATC 3 cut(s) 171, 322, 1124
BspQI GCTCTTC 1 cut(s) 946
BspT107I GGYRCC 2 cut(s) 495, 683
BsrDI GCAATG 3 cut(s) 419, 424, 456
BssECI CCNNGG 8 cut(s) 59, 60, 384, 432, 597, 939, 960, 987
BssMI GATC 9 cut(s) 69, 163, 238, 314, 364, 646, 658, 1129, 1328
BssT1I CCWWGG 2 cut(s) 432, 597
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 4 cut(s) 326, 485, 706, 1040
Bst6I CTCTTC 1 cut(s) 946
BstBAI YACGTR 2 cut(s) 475, 1102
BstC8I GCNNGC 1 cut(s) 402
BstDSI CCRYGG 2 cut(s) 597, 939
BstF5I GGATG 6 cut(s) 54, 226, 317, 956, 1114, 1207
BstFNI CGCG 3 cut(s) 538, 941, 1032
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 2 cut(s) 119, 538
BstKTI GATC 9 cut(s) 72, 166, 241, 317, 367, 649, 661, 1132, 1331
BstMBI GATC 9 cut(s) 69, 163, 238, 314, 364, 646, 658, 1129, 1328
BstMCI CGRYCG 1 cut(s) 454
BstMWI GCNNNNNNNGC 2 cut(s) 401, 673
BstNI CCWGG 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 4 cut(s) 59, 356, 491, 1122
BstSLI GKGCMC 1 cut(s) 500
BstUI CGCG 3 cut(s) 538, 941, 1032
BstV1I GCAGC 2 cut(s) 688, 1243
BstV2I GAAGAC 3 cut(s) 34, 628, 995
BstX2I RGATCY 3 cut(s) 163, 1129, 1328
BstXI CCANNNNNNTGG 1 cut(s) 1075
BstYI RGATCY 3 cut(s) 163, 1129, 1328
BstZI CGGCCG 1 cut(s) 451
BsuI GTATCC 1 cut(s) 845
BsuRI GGCC 4 cut(s) 344, 375, 453, 1058
BtgI CCRYGG 2 cut(s) 597, 939
BtsCI GGATG 6 cut(s) 54, 226, 317, 956, 1114, 1207
BtsI GCAGTG 3 cut(s) 90, 402, 1275
BtsIMutI CAGTG 7 cut(s) 90, 402, 464, 755, 876, 1155, 1275
BveI ACCTGC 2 cut(s) 142, 417
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 2 cut(s) 119, 538
Cfr13I GGNCC 3 cut(s) 154, 343, 1056
Cfr42I CCGCGG 1 cut(s) 942
CseI GACGC 1 cut(s) 451
Csp6I GTAC 1 cut(s) 9
CviAII CATG 7 cut(s) 128, 217, 230, 598, 802, 821, 856
CviQI GTAC 1 cut(s) 9
DpnI GATC 9 cut(s) 71, 165, 240, 316, 366, 648, 660, 1131, 1330
DpnII GATC 9 cut(s) 69, 163, 238, 314, 364, 646, 658, 1129, 1328
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 451
EagI CGGCCG 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 946
EarI CTCTTC 1 cut(s) 946
EclXI CGGCCG 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 432, 597
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 1323
Eco47I GGWCC 1 cut(s) 154
Eco47III AGCGCT 1 cut(s) 118
Eco52I CGGCCG 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 432, 597
EcoT38I GRGCYC 1 cut(s) 1323
ErhI CCWWGG 2 cut(s) 432, 597
FaeI CATG 7 cut(s) 131, 220, 233, 601, 805, 824, 859
FaqI GGGAC 2 cut(s) 373, 857
FatI CATG 7 cut(s) 127, 216, 229, 597, 801, 820, 855
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 454, 677, 939, 1232
FokI GGATG 6 cut(s) 61, 233, 304, 943, 1121, 1194
FriOI GRGCYC 1 cut(s) 1323
Fsp4HI GCNGC 4 cut(s) 454, 677, 939, 1232
FspBI CTAG 5 cut(s) 120, 401, 974, 1007, 1292
GlaI GCGC 2 cut(s) 118, 537
GluI GCNGC 4 cut(s) 454, 677, 939, 1232
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 4 cut(s) 344, 375, 453, 1058
HapII CCGG 5 cut(s) 46, 357, 492, 695, 1124
HgaI GACGC 1 cut(s) 451
HhaI GCGC 2 cut(s) 119, 538
Hin1II CATG 7 cut(s) 131, 220, 233, 601, 805, 824, 859
Hin6I GCGC 2 cut(s) 117, 536
HinP1I GCGC 2 cut(s) 117, 536
HincII GTYRAC 2 cut(s) 112, 795
HindII GTYRAC 2 cut(s) 112, 795
HindIII AAGCTT 2 cut(s) 186, 767
HinfI GANTC 5 cut(s) 428, 488, 509, 1145, 1303
HpaII CCGG 5 cut(s) 46, 357, 492, 695, 1124
Hpy166II GTNNAC 4 cut(s) 9, 112, 441, 795
Hpy188I TCNGA 8 cut(s) 202, 385, 901, 961, 1118, 1134, 1298, 1328
Hpy188III TCNNGA 5 cut(s) 46, 67, 140, 650, 1338
Hpy8I GTNNAC 4 cut(s) 9, 112, 441, 795
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 5 cut(s) 117, 386, 472, 1180, 1293
HpyCH4III ACNGT 4 cut(s) 326, 485, 706, 1040
HpyCH4IV ACGT 5 cut(s) 474, 791, 1014, 1092, 1101
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 673
HpySE526I ACGT 5 cut(s) 474, 791, 1014, 1092, 1101
Hsp92II CATG 7 cut(s) 131, 220, 233, 601, 805, 824, 859
HspAI GCGC 2 cut(s) 117, 536
Kpn2I TCCGGA 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 238
KspI CCGCGG 1 cut(s) 942
Kzo9I GATC 9 cut(s) 69, 163, 238, 314, 364, 646, 658, 1129, 1328
LguI GCTCTTC 1 cut(s) 946
LmnI GCTCC 3 cut(s) 92, 1228, 1287
Lsp1109I GCAGC 2 cut(s) 688, 1243
LweI GCATC 3 cut(s) 637, 965, 1099
MaeI CTAG 5 cut(s) 120, 401, 974, 1007, 1292
MaeII ACGT 5 cut(s) 474, 791, 1014, 1092, 1101
MaeIII GTNAC 8 cut(s) 232, 291, 604, 728, 1015, 1048, 1102, 1172
MalI GATC 9 cut(s) 71, 165, 240, 316, 366, 648, 660, 1131, 1330
MboI GATC 9 cut(s) 69, 163, 238, 314, 364, 646, 658, 1129, 1328
MboII GAAGA 6 cut(s) 34, 128, 189, 633, 963, 995
MflI RGATCY 3 cut(s) 163, 1129, 1328
MhlI GDGCHC 2 cut(s) 500, 1323
MluCI AATT 9 cut(s) 132, 254, 303, 519, 528, 712, 828, 860, 1312
MlyI GAGTC 2 cut(s) 437, 503
MmeI TCCRAC 2 cut(s) 345, 1096
MroI TCCGGA 1 cut(s) 45
MseI TTAA 7 cut(s) 168, 180, 276, 330, 542, 831, 1044
MslI CAYNNNNRTG 3 cut(s) 704, 879, 1073
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 5 cut(s) 46, 357, 492, 695, 1124
MspR9I CCNGG 4 cut(s) 61, 358, 493, 1124
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 3 cut(s) 538, 941, 1032
MwoI GCNNNNNNNGC 2 cut(s) 401, 673
NciI CCSGG 3 cut(s) 358, 493, 1124
NcoI CCATGG 1 cut(s) 597
NdeII GATC 9 cut(s) 69, 163, 238, 314, 364, 646, 658, 1129, 1328
NheI GCTAGC 1 cut(s) 400
NlaIII CATG 7 cut(s) 131, 220, 233, 601, 805, 824, 859
NlaIV GGNNCC 4 cut(s) 497, 685, 886, 1289
NmeAIII GCCGAG 1 cut(s) 1084
NmuCI GTSAC 3 cut(s) 291, 1048, 1102
PasI CCCWGGG 1 cut(s) 60
PceI AGGCCT 1 cut(s) 375
PciSI GCTCTTC 1 cut(s) 946
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 1098
PfeI GAWTC 3 cut(s) 488, 1145, 1303
PflMI CCANNNNNTGG 1 cut(s) 438
PkrI GCNGC 4 cut(s) 455, 678, 940, 1233
PleI GAGTC 2 cut(s) 436, 503
PpsI GAGTC 2 cut(s) 436, 503
Ppu21I YACGTR 2 cut(s) 475, 1102
PpuMI RGGWCCY 1 cut(s) 154
PshAI GACNNNNGTC 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 4 cut(s) 497, 685, 886, 1289
PspPI GGNCC 3 cut(s) 154, 343, 1056
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 3 cut(s) 163, 1129, 1328
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 3 cut(s) 704, 879, 1073
SacII CCGCGG 1 cut(s) 942
SapI GCTCTTC 1 cut(s) 946
SaqAI TTAA 7 cut(s) 168, 180, 276, 330, 542, 831, 1044
SatI GCNGC 4 cut(s) 454, 677, 939, 1232
Sau3AI GATC 9 cut(s) 69, 163, 238, 314, 364, 646, 658, 1129, 1328
Sau96I GGNCC 3 cut(s) 154, 343, 1056
SchI GAGTC 2 cut(s) 437, 503
ScrFI CCNGG 4 cut(s) 61, 358, 493, 1124
SduI GDGCHC 2 cut(s) 500, 1323
SfaNI GCATC 3 cut(s) 637, 965, 1099
Sfr303I CCGCGG 1 cut(s) 942
SgrBI CCGCGG 1 cut(s) 942
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 3 cut(s) 704, 879, 1073
SmlI CTYRAG 2 cut(s) 347, 554
SmoI CTYRAG 2 cut(s) 347, 554
Sse9I AATT 9 cut(s) 132, 254, 303, 519, 528, 712, 828, 860, 1312
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 6 cut(s) 454, 538, 602, 939, 941, 1030
SspI AATATT 1 cut(s) 745
SspMI CTAG 5 cut(s) 120, 401, 974, 1007, 1292
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 4 cut(s) 59, 356, 491, 1122
StyI CCWWGG 2 cut(s) 432, 597
TaaI ACNGT 4 cut(s) 326, 485, 706, 1040
TaiI ACGT 5 cut(s) 477, 794, 1017, 1095, 1104
TaqI TCGA 6 cut(s) 21, 72, 367, 661, 777, 1143
TasI AATT 9 cut(s) 132, 254, 303, 519, 528, 712, 828, 860, 1312
TatI WGTACW 1 cut(s) 8
TauI GCSGC 2 cut(s) 456, 941
TfiI GAWTC 3 cut(s) 488, 1145, 1303
Tru1I TTAA 7 cut(s) 168, 180, 276, 330, 542, 831, 1044
Tru9I TTAA 7 cut(s) 168, 180, 276, 330, 542, 831, 1044
TscAI CASTG 7 cut(s) 97, 402, 471, 755, 883, 1155, 1275
TseFI GTSAC 3 cut(s) 291, 1048, 1102
TseI GCWGC 2 cut(s) 676, 1231
Tsp45I GTSAC 3 cut(s) 291, 1048, 1102
TspDTI ATGAA 6 cut(s) 45, 65, 205, 218, 296, 809
TspGWI ACGGA 4 cut(s) 176, 275, 812, 1121
TspRI CASTG 7 cut(s) 97, 402, 471, 755, 883, 1155, 1275
Van91I CCANNNNNTGG 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 2 cut(s) 132, 860
XspI CTAG 5 cut(s) 120, 401, 974, 1007, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.