FvH4_5g02190

amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008864
Physical Location & Seq
Forward (+)
1357384 .. 1359184
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02190.t1

Sequence Viewer

Length: 1203 bp
ATGTTGGAAGAACAGCTAACAGAAGTCCATGATGCTAAAGGAACAAGCTTCCTCAAAACTTGCTTCAACATGATCAATGGCCTGACAGGACTCGGGCTCATTACAACCCCTTACGCAGTTTCGAGGACTGGTTGGTCAAGCCTTCCTTTTCTTATAGTTATTGGAATGATAAGTTGCTATGCTGGGATCTTGCTCACCAGATGCTTGGACACCGATGCATCAATGAAGACCTATCCTGATGTTGGTTTCCATGCATTCGGGTCTAAAGGCAGAATATTCGTGTCCATTTTCCAGTATCTAGAGCTTTACCTAATCCCAATAGGATTCCTGATAATGGAAGCTGATAATTTAGAAAGGTTTTTCCCACAAGCTGGGATCAATCTAGGTGGACATCACATAGGGGGAAAACCATTTTTTACAATGGTTGTGGGGATCATTATATTACCTACAATGTGGTTGAAACACCTACGGTTTCTTGCCTACGTCTCAATGTGGGGATTTGTATCTGCCATTACCATTGTCGTGTCGATTGTTTGTGTTGGTGTCGATGGAGTAGGGTTCTCTAAAAGAGGGAAGATGTTTGATCCGACTGGACTTCCTACCTCTCTTAGTTTGTTTGCATTTTGCTATGGAGTTCATTGCGTCACTCCCTCCGTATACTCCTCTATGAGACATAAAAACCAATTCTACAAGATTCTGTTCATCATTTTTTCCATCTGCACTATGAACTACATAGTTCTAGCTGTTCTTGGCTACTTAATGTTTGGTGATGATGCTCAACCTCAAGTGATAATGAACCTGCCTACAGGTAAAATAATATCAAAAGTAGCAATATACACCACTCTAGCGATCCCAATCATCAAGTTTGCACTCATAATGACACCTATAACAAATGCCATTGAAAACAGCTTGCCGAAAGATTGGAATAACATGTTCATTTTCATGTTCATCAGAACACTGCTATTAGTGAGCACAGTGGTATTGGCCATAGCTTTTCCATATTTTGACACACTGTTGGCACTAGTTGGAGCCATTCTTTGTGTCACTATGTCCATGTTGGTTCCATGTATATGTTACCTGAAGATATTCAGACTATACCGGAAGTGTACCGTGGAAGTTGCAATAATTGGATGTATTATGGTTATCAGTGTGACTATGGGTGGACTAGGTACATACACATCTATCAAAGAGAGATTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

401

Amino Acids

44.38

Weight (kDa)

8.84

Isoelectric Point (pI)

22.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 14 - 392 2.1e-64 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 807
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 1 cut(s) 657
AclWI GGATC 5 cut(s) 194, 383, 440, 578, 844
AcoI YGGCCR 1 cut(s) 984
AcuI CTGAAG 1 cut(s) 1100
AfaI GTAC 2 cut(s) 1108, 1171
AfiI CCNNNNNNNGG 3 cut(s) 242, 334, 371
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 3 cut(s) 67, 460, 902
AhlI ACTAGT 1 cut(s) 1021
AluBI AGCT 8 cut(s) 16, 48, 304, 341, 371, 743, 909, 992
AluI AGCT 8 cut(s) 16, 48, 304, 341, 371, 743, 909, 992
Alw21I GWGCWC 1 cut(s) 974
Alw26I GTCTC 2 cut(s) 490, 664
AlwI GGATC 5 cut(s) 194, 383, 440, 578, 844
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 2 cut(s) 79, 984
Asp700I GAANNNNTTC 1 cut(s) 1085
AsuHPI GGTGA 2 cut(s) 187, 779
AvaI CYCGRG 1 cut(s) 92
BalI TGGCCA 1 cut(s) 986
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 974
BccI CCATC 2 cut(s) 542, 722
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 490, 664
BcuI ACTAGT 1 cut(s) 1021
BfaI CTAG 6 cut(s) 299, 383, 740, 845, 1022, 1166
BfmI CTRYAG 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 807
BmeT110I CYCGRG 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 1030, 1062
BmsI GCATC 5 cut(s) 22, 191, 205, 227, 763
BpiI GAAGAC 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 768
BsaBI GATNNNNATC 2 cut(s) 502, 854
BsaJI CCNNGG 1 cut(s) 1110
BsaWI WCCGGW 1 cut(s) 1098
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 334, 371
Bse1I ACTGG 3 cut(s) 133, 292, 595
Bse3DI GCAATG 1 cut(s) 637
Bse8I GATNNNNATC 2 cut(s) 502, 854
BseDI CCNNGG 1 cut(s) 1110
BseGI GGATG 1 cut(s) 1136
BseJI GATNNNNATC 2 cut(s) 502, 854
BseLI CCNNNNNNNGG 3 cut(s) 242, 334, 371
BseMI GCAATG 1 cut(s) 637
BseNI ACTGG 3 cut(s) 133, 292, 595
BseRI GAGGAG 1 cut(s) 652
BseYI CCCAGC 2 cut(s) 182, 371
BsgI GTGCAG 1 cut(s) 703
BshFI GGCC 2 cut(s) 81, 986
BsiHKAI GWGCWC 1 cut(s) 974
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 1099
BslI CCNNNNNNNGG 3 cut(s) 242, 334, 371
BsmAI GTCTC 2 cut(s) 490, 664
BsmBI CGTCTC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 2 cut(s) 81, 986
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 99, 974
Bsp143I GATC 6 cut(s) 72, 186, 375, 432, 583, 849
BspANI GGCC 2 cut(s) 81, 986
BspHI TCATGA 1 cut(s) 1199
BspLI GGNNCC 2 cut(s) 1030, 1062
BspMI ACCTGC 1 cut(s) 807
BspPI GGATC 5 cut(s) 194, 383, 440, 578, 844
BsrDI GCAATG 1 cut(s) 637
BsrI ACTGG 3 cut(s) 133, 292, 595
BssECI CCNNGG 1 cut(s) 1110
BssMI GATC 6 cut(s) 72, 186, 375, 432, 583, 849
BssNAI GTATAC 1 cut(s) 658
Bst1107I GTATAC 1 cut(s) 658
Bst4CI ACNGT 4 cut(s) 471, 976, 1014, 1111
BstC8I GCNNGC 1 cut(s) 911
BstDEI CTNAG 1 cut(s) 608
BstDSI CCRYGG 1 cut(s) 1110
BstF5I GGATG 1 cut(s) 1136
BstKTI GATC 6 cut(s) 75, 189, 378, 435, 586, 852
BstMAI GTCTC 2 cut(s) 490, 664
BstMBI GATC 6 cut(s) 72, 186, 375, 432, 583, 849
BstNSI RCATGY 1 cut(s) 934
BstSFI CTRYAG 1 cut(s) 804
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 658
BsuRI GGCC 2 cut(s) 81, 986
BtgI CCRYGG 1 cut(s) 1110
BtsCI GGATG 1 cut(s) 1136
BtsI GCAGTG 1 cut(s) 956
BtsIMutI CAGTG 4 cut(s) 956, 981, 1010, 1153
BveI ACCTGC 1 cut(s) 807
Cac8I GCNNGC 1 cut(s) 911
CciI TCATGA 1 cut(s) 1199
CseI GACGC 1 cut(s) 631
Csp6I GTAC 2 cut(s) 1107, 1170
CspCI CAANNNNNGTGG 4 cut(s) 367, 402, 408, 443
CviAII CATG 8 cut(s) 29, 70, 251, 931, 943, 1054, 1065, 1200
CviQI GTAC 2 cut(s) 1107, 1170
DdeI CTNAG 1 cut(s) 608
DpnI GATC 6 cut(s) 74, 188, 377, 434, 585, 851
DpnII GATC 6 cut(s) 72, 186, 375, 432, 583, 849
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 984
Eco24I GRGCYC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 1100
Eco88I CYCGRG 1 cut(s) 92
EcoT22I ATGCAT 2 cut(s) 220, 256
EcoT38I GRGCYC 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 490
FaeI CATG 8 cut(s) 32, 73, 254, 934, 946, 1057, 1068, 1203
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 8 cut(s) 28, 69, 250, 930, 942, 1053, 1064, 1199
FbaI TGATCA 1 cut(s) 72
FblI GTMKAC 1 cut(s) 657
FokI GGATG 1 cut(s) 1143
FriOI GRGCYC 1 cut(s) 99
FspBI CTAG 6 cut(s) 299, 383, 740, 845, 1022, 1166
GsaI CCCAGC 2 cut(s) 186, 375
HaeIII GGCC 2 cut(s) 81, 986
HapII CCGG 1 cut(s) 1099
HgaI GACGC 1 cut(s) 631
Hin1II CATG 8 cut(s) 32, 73, 254, 934, 946, 1057, 1068, 1203
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 3 cut(s) 90, 324, 694
HpaII CCGG 1 cut(s) 1099
HphI GGTGA 2 cut(s) 187, 779
Hpy166II GTNNAC 4 cut(s) 389, 658, 1107, 1163
Hpy188I TCNGA 3 cut(s) 588, 953, 1091
Hpy188III TCNNGA 4 cut(s) 236, 299, 328, 1200
Hpy8I GTNNAC 4 cut(s) 389, 658, 1107, 1163
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 4 cut(s) 471, 976, 1014, 1111
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 6 cut(s) 218, 254, 620, 720, 869, 1121
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 8 cut(s) 32, 73, 254, 934, 946, 1057, 1068, 1203
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 6 cut(s) 72, 186, 375, 432, 583, 849
LmnI GCTCC 1 cut(s) 1028
LweI GCATC 5 cut(s) 22, 191, 205, 227, 763
MaeI CTAG 6 cut(s) 299, 383, 740, 845, 1022, 1166
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 4 cut(s) 643, 1042, 1073, 1150
MalI GATC 6 cut(s) 74, 188, 377, 434, 585, 851
MboI GATC 6 cut(s) 72, 186, 375, 432, 583, 849
MboII GAAGA 4 cut(s) 20, 238, 586, 1093
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 99, 974
MlsI TGGCCA 1 cut(s) 986
MluCI AATT 3 cut(s) 346, 683, 1125
MluNI TGGCCA 1 cut(s) 986
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 2 cut(s) 611, 1006
MnlI CCTC 7 cut(s) 62, 117, 563, 613, 661, 673, 792
Mox20I TGGCCA 1 cut(s) 986
Mph1103I ATGCAT 2 cut(s) 220, 256
MroXI GAANNNNTTC 1 cut(s) 1085
MscI TGGCCA 1 cut(s) 986
MseI TTAA 1 cut(s) 758
MslI CAYNNNNRTG 3 cut(s) 521, 941, 1069
Msp20I TGGCCA 1 cut(s) 986
MspI CCGG 1 cut(s) 1099
Mva1269I GAATGC 1 cut(s) 254
NdeII GATC 6 cut(s) 72, 186, 375, 432, 583, 849
NlaIII CATG 8 cut(s) 32, 73, 254, 934, 946, 1057, 1068, 1203
NlaIV GGNNCC 2 cut(s) 1030, 1062
NmuCI GTSAC 3 cut(s) 643, 1042, 1150
NsiI ATGCAT 2 cut(s) 220, 256
NspI RCATGY 1 cut(s) 934
PagI TCATGA 1 cut(s) 1199
PciI ACATGT 1 cut(s) 930
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 2 cut(s) 324, 694
PflMI CCANNNNNTGG 1 cut(s) 371
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PscI ACATGT 1 cut(s) 930
PspFI CCCAGC 2 cut(s) 182, 371
PspN4I GGNNCC 2 cut(s) 1030, 1062
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 2 cut(s) 1108, 1171
RsaNI GTAC 2 cut(s) 1107, 1170
RseI CAYNNNNRTG 3 cut(s) 521, 941, 1069
SaqAI TTAA 1 cut(s) 758
Sau3AI GATC 6 cut(s) 72, 186, 375, 432, 583, 849
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 2 cut(s) 99, 974
SfaNI GCATC 5 cut(s) 22, 191, 205, 227, 763
SfcI CTRYAG 1 cut(s) 804
SmiMI CAYNNNNRTG 3 cut(s) 521, 941, 1069
SmlI CTYRAG 1 cut(s) 783
SmoI CTYRAG 1 cut(s) 783
SpeI ACTAGT 1 cut(s) 1021
Sse9I AATT 3 cut(s) 346, 683, 1125
SspI AATATT 1 cut(s) 276
SspMI CTAG 6 cut(s) 299, 383, 740, 845, 1022, 1166
TaaI ACNGT 4 cut(s) 471, 976, 1014, 1111
TaiI ACGT 1 cut(s) 486
TaqI TCGA 3 cut(s) 122, 527, 546
TasI AATT 3 cut(s) 346, 683, 1125
TfiI GAWTC 2 cut(s) 324, 694
Tru1I TTAA 1 cut(s) 758
Tru9I TTAA 1 cut(s) 758
TscAI CASTG 4 cut(s) 963, 981, 1017, 1153
TseFI GTSAC 3 cut(s) 643, 1042, 1150
Tsp45I GTSAC 3 cut(s) 643, 1042, 1150
TspDTI ATGAA 9 cut(s) 239, 626, 691, 740, 809, 925, 931, 937, 1188
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 4 cut(s) 963, 981, 1017, 1153
Van91I CCANNNNNTGG 1 cut(s) 371
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 1 cut(s) 934
XmiI GTMKAC 1 cut(s) 657
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 6 cut(s) 299, 383, 740, 845, 1022, 1166
Zsp2I ATGCAT 2 cut(s) 220, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.