Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001082.1

Orthogroup ID

OG0008864

Physical Location & Seq

Genomic Coordinates Forward (+)

49015 .. 50590

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001082.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgttggaagatcagctaacggaagtccaagaagctaaaggaacaagcttcctgaaaacttgcttcaacatgatcaatgccctgacaggacttgggctcattacaaccccttacgcagtttcgaggactgggtggtcaagccttccttttcttatagctactggaattataagttgctatgctgggatcttactcaccaaatgcttgaacaccgatgcatcaatgaagacctatcctgatgttggtttccatgcattcgggtctaaaggcaggatgtttgtgtccattttcatgtatcttgagctttacctagtctcaataggattcttgataatggaagctgataatttagaaaggtttttcccacaggctgggatcaatctacgcggatatcacatagggggaaaaccattttttacaatggttgtggggctaataatattacctacaatgtggttgaaaaacctacgattgcttgcctacgtctcaatgtgtggctttctatcagccattatcatcgtcgtctcaattgtttgtgttggtattgatggagtagggttctctaaaagagggaagatatttgatttgaccggaattcctacctctcttagtttgtttgcattttgttatggagttcattccgttactcccatggtatactcttctatgagacatagaaatcatttctacaagattttgttcatcgtttttcccctctgcactgtgaactacattatcctagctgttcttggctacttaatgtttggcgatgatgttcaatctcaagtgataatgaacctgcctacaagtaaagtcatttcaaaaatagcaatatacaccactttagcgatccccatcgtcaagtatgcactcctaatgacacctttagcaaatgccattgagaacagcttgccgaaaaaatggaataacatgctcattttcatgttcataagaacactgctattatttactgttatgcctaagcctatggcttacccacatttttgctccattcgagcagagcaaggttatgctctaactgaacgtacatttgccccagataccgcagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

357

Amino Acids

39.81

Weight (kDa)

9.01

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02190
rosa_chinensis	RchiOBHm_Chr7g0182211 RchiOBHm_Chr7g0197941
rosa_laevigata	RLG00000003901
rosa_multiflora	Rmu_sc0000003.1_g000015 Rmu_sc0001082.1_g000012 Rmu_sc0016104.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258090 Rroxscaffold_3G00271420
rosa_rugosa	Rorug06G0446000 Rorug06G0446000 Rorug06G0446000 Rorug06G0446000 Rorug07G0044700 Rorug07G0044800
rosa_samantha	Rh7BG049200 Rh7BG171100 Rh7CG050500 Rh7CG177700 Rh7DG048400 Rh7DG170300
rosa_wichuraiana	Rw7G004020 Rw7G014680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	807
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	657
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	387, 1065
AclWI	GGATC	3 cut(s)	194, 383, 844
AcsI	RAATTY	1 cut(s)	594
AfaI	GTAC	1 cut(s)	1048
AfiI	CCNNNNNNNGG	2 cut(s)	242, 371
AgsI	TTSAA	5 cut(s)	67, 208, 460, 779, 822
AluBI	AGCT	8 cut(s)	16, 35, 48, 158, 304, 341, 743, 909
AluI	AGCT	8 cut(s)	16, 35, 48, 158, 304, 341, 743, 909
Alw26I	GTCTC	4 cut(s)	319, 490, 529, 664
AlwI	GGATC	3 cut(s)	194, 383, 844
ApoI	RAATTY	1 cut(s)	594
AsuHPI	GGTGA	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	233
BccI	CCATC	2 cut(s)	542, 863
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	4 cut(s)	319, 490, 529, 664
BfaI	CTAG	2 cut(s)	311, 740
BfuAI	ACCTGC	1 cut(s)	807
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	205, 227
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	981
BpuEI	CTTGAG	2 cut(s)	320, 768
BsaBI	GATNNNNATC	1 cut(s)	854
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 371
Bse1I	ACTGG	2 cut(s)	133, 166
Bse8I	GATNNNNATC	1 cut(s)	854
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	854
BseLI	CCNNNNNNNGG	2 cut(s)	242, 371
BseNI	ACTGG	2 cut(s)	133, 166
BseYI	CCCAGC	2 cut(s)	182, 371
BsgI	GTGCAG	1 cut(s)	703
Bsh1236I	CGCG	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	591
BslI	CCNNNNNNNGG	2 cut(s)	242, 371
BsmAI	GTCTC	4 cut(s)	319, 490, 529, 664
BsmBI	CGTCTC	2 cut(s)	490, 529
BsmI	GAATGC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	5 cut(s)	10, 72, 186, 375, 849
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	2 cut(s)	387, 1065
BspFNI	CGCG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	807
BspPI	GGATC	3 cut(s)	194, 383, 844
BsrI	ACTGG	2 cut(s)	133, 166
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	5 cut(s)	10, 72, 186, 375, 849
BssNAI	GTATAC	1 cut(s)	658
BssT1I	CCWWGG	1 cut(s)	651
Bst1107I	GTATAC	1 cut(s)	658
Bst4CI	ACNGT	2 cut(s)	724, 973
Bst6I	CTCTTC	1 cut(s)	667
BstC8I	GCNNGC	2 cut(s)	477, 911
BstDEI	CTNAG	2 cut(s)	608, 981
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	5 cut(s)	13, 75, 189, 378, 852
BstMAI	GTCTC	4 cut(s)	319, 490, 529, 664
BstMBI	GATC	5 cut(s)	10, 72, 186, 375, 849
BstNSI	RCATGY	1 cut(s)	934
BstUI	CGCG	1 cut(s)	387
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BstZ17I	GTATAC	1 cut(s)	658
BtgI	CCRYGG	1 cut(s)	651
BtgZI	GCGATG	1 cut(s)	783
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	956
BtsIMutI	CAGTG	2 cut(s)	720, 956
BveI	ACCTGC	1 cut(s)	807
Cac8I	GCNNGC	2 cut(s)	477, 911
Csp6I	GTAC	1 cut(s)	1047
CspCI	CAANNNNNGTGG	2 cut(s)	408, 443
CviAII	CATG	6 cut(s)	70, 251, 292, 652, 931, 943
CviQI	GTAC	1 cut(s)	1047
DdeI	CTNAG	2 cut(s)	608, 981
DpnI	GATC	5 cut(s)	12, 74, 188, 377, 851
DpnII	GATC	5 cut(s)	10, 72, 186, 375, 849
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	667
EarI	CTCTTC	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	651
EcoT22I	ATGCAT	2 cut(s)	220, 256
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	651
Esp3I	CGTCTC	2 cut(s)	490, 529
FaeI	CATG	6 cut(s)	73, 254, 295, 655, 934, 946
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FatI	CATG	6 cut(s)	69, 250, 291, 651, 930, 942
FbaI	TGATCA	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	657
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	311, 740
GsaI	CCCAGC	2 cut(s)	186, 375
HapII	CCGG	1 cut(s)	591
Hin1II	CATG	6 cut(s)	73, 254, 295, 655, 934, 946
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	1 cut(s)	324
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	658, 727
Hpy188III	TCNNGA	4 cut(s)	52, 236, 299, 328
Hpy8I	GTNNAC	2 cut(s)	658, 727
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	724, 973
HpyCH4IV	ACGT	2 cut(s)	483, 1045
HpyCH4V	TGCA	5 cut(s)	218, 254, 620, 720, 869
HpyF3I	CTNAG	2 cut(s)	608, 981
HpySE526I	ACGT	2 cut(s)	483, 1045
Hsp92II	CATG	6 cut(s)	73, 254, 295, 655, 934, 946
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	10, 72, 186, 375, 849
LmnI	GCTCC	1 cut(s)	1013
LweI	GCATC	2 cut(s)	205, 227
MaeI	CTAG	2 cut(s)	311, 740
MaeII	ACGT	2 cut(s)	483, 1045
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	5 cut(s)	12, 74, 188, 377, 851
MboI	GATC	5 cut(s)	10, 72, 186, 375, 849
MboII	GAAGA	4 cut(s)	20, 238, 586, 654
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	4 cut(s)	165, 346, 528, 594
MnlI	CCTC	4 cut(s)	117, 563, 613, 725
Mph1103I	ATGCAT	2 cut(s)	220, 256
MseI	TTAA	1 cut(s)	758
MslI	CAYNNNNRTG	2 cut(s)	290, 941
MspI	CCGG	1 cut(s)	591
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	254
MvnI	CGCG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	5 cut(s)	10, 72, 186, 375, 849
NlaIII	CATG	6 cut(s)	73, 254, 295, 655, 934, 946
NsiI	ATGCAT	2 cut(s)	220, 256
NspI	RCATGY	1 cut(s)	934
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	324
PflMI	CCANNNNNTGG	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	170
PspFI	CCCAGC	2 cut(s)	182, 371
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	1048
RsaNI	GTAC	1 cut(s)	1047
RseI	CAYNNNNRTG	2 cut(s)	290, 941
SaqAI	TTAA	1 cut(s)	758
Sau3AI	GATC	5 cut(s)	10, 72, 186, 375, 849
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	205, 227
SmiMI	CAYNNNNRTG	2 cut(s)	290, 941
SmlI	CTYRAG	2 cut(s)	299, 783
SmoI	CTYRAG	2 cut(s)	299, 783
Sse9I	AATT	4 cut(s)	165, 346, 528, 594
SsiI	CCGC	2 cut(s)	387, 1065
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	2 cut(s)	311, 740
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	724, 973
TaiI	ACGT	2 cut(s)	486, 1048
TaqI	TCGA	2 cut(s)	122, 1015
TasI	AATT	4 cut(s)	165, 346, 528, 594
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TscAI	CASTG	2 cut(s)	727, 963
TspDTI	ATGAA	7 cut(s)	239, 280, 626, 691, 809, 931, 937
TspGWI	ACGGA	2 cut(s)	35, 631
TspRI	CASTG	2 cut(s)	727, 963
Van91I	CCANNNNNTGG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	594
XceI	RCATGY	1 cut(s)	934
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	2 cut(s)	311, 740
Zsp2I	ATGCAT	2 cut(s)	220, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.