Rorug07G0044800

amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0008864
Physical Location & Seq
Reverse (-)
3271364 .. 3271849
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0044800.1

Sequence Viewer

Length: 486 bp
ATGGAGCTCCAGTACGTGGAAGGCCGTCCAGTGTTTGTGAAACATCTGAAGCAATCAGATGTGGATAGCAGGCTGGTACTGACTACTGAGATGCTTCACATGATCATGCCTCGTCCAGATCCAGAGAATGACACTCCAATCAGAGTCTTGGATGATAAGGGTGATGTCTATCAGTTCAAATTGTCTGTAAGAACGGGCCCACATCCCAAACCAGTTTTGCAGGCCAAAGAATGGAAAGCATTCCTCAGAAAACGAGGAGCCAGAGTTGAACACACCATCTGTTTCTGGAGAGAGGTGAATGCAATTAAGCGTACAGACTACGGCATCAAGTTATATCCATACACATGTTATCTTTCCCCCGAGCCAGAAGGTCTTTCATCTTCCGAGCCATCATCTGCAGGTGCAGATGAGCATGAAAAGCTAGCTATGAAGGCTTGGGCGGCTCACGGTCTAACACTAAGCACTGTAGCGAATGATCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

161

Amino Acids

18.37

Weight (kDa)

7.06

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 389
AccB7I CCANNNNNTGG 2 cut(s) 16, 231
AciI CCGC 1 cut(s) 440
AclWI GGATC 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 3 cut(s) 14, 78, 313
AfiI CCNNNNNNNGG 2 cut(s) 16, 231
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 2 cut(s) 178, 269
AluBI AGCT 3 cut(s) 7, 421, 425
AluI AGCT 3 cut(s) 7, 421, 425
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 3 cut(s) 22, 196, 222
ApaI GGGCCC 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 196, 197
AsuHPI GGTGA 2 cut(s) 173, 307
AsuNHI GCTAGC 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 9, 200
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 2 cut(s) 284, 397
BceAI ACGGC 2 cut(s) 9, 337
BclI TGATCA 2 cut(s) 102, 475
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 2 cut(s) 396, 465
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 196, 197
BmiI GGNNCC 2 cut(s) 198, 259
BmsI GCATC 2 cut(s) 81, 333
BmtI GCTAGC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 168
BsaXI ACNNNNNCTCC 3 cut(s) 26, 249, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 231
Bse1I ACTGG 3 cut(s) 10, 29, 212
Bse8I GATNNNNATC 1 cut(s) 168
BseGI GGATG 2 cut(s) 157, 202
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 16, 231
BseMII CTCAG 2 cut(s) 78, 259
BseNI ACTGG 3 cut(s) 10, 29, 212
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 3 cut(s) 24, 198, 224
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 16, 231
BsmI GAATGC 2 cut(s) 239, 304
BsnI GGCC 3 cut(s) 24, 198, 224
BsoBI CYCGRG 1 cut(s) 359
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 9, 200
Bsp143I GATC 3 cut(s) 102, 118, 475
BspACI CCGC 1 cut(s) 440
BspANI GGCC 3 cut(s) 24, 198, 224
BspCNI CTCAG 2 cut(s) 79, 258
BspLI GGNNCC 2 cut(s) 198, 259
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 389
BspOI GCTAGC 1 cut(s) 425
BspPI GGATC 1 cut(s) 113
BsrI ACTGG 3 cut(s) 10, 29, 212
BssMI GATC 3 cut(s) 102, 118, 475
Bst4CI ACNGT 2 cut(s) 449, 466
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 71, 222, 423
BstDEI CTNAG 3 cut(s) 87, 245, 458
BstF5I GGATG 2 cut(s) 157, 202
BstKTI GATC 3 cut(s) 105, 121, 478
BstMBI GATC 3 cut(s) 102, 118, 475
BstMWI GCNNNNNNNGC 3 cut(s) 418, 431, 440
BstNSI RCATGY 1 cut(s) 348
BstSFI CTRYAG 2 cut(s) 396, 465
BstSLI GKGCMC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 3 cut(s) 24, 198, 224
BtsCI GGATG 2 cut(s) 157, 202
BtsIMutI CAGTG 2 cut(s) 36, 462
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 71, 222, 423
Cfr13I GGNCC 2 cut(s) 196, 197
Csp6I GTAC 3 cut(s) 13, 77, 312
CviAII CATG 4 cut(s) 100, 106, 345, 413
CviQI GTAC 3 cut(s) 13, 77, 312
DdeI CTNAG 3 cut(s) 87, 245, 458
DpnI GATC 3 cut(s) 104, 120, 477
DpnII GATC 3 cut(s) 102, 118, 475
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 2 cut(s) 9, 200
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 7
EcoT38I GRGCYC 2 cut(s) 9, 200
FaeI CATG 4 cut(s) 103, 109, 348, 416
FaiI YATR 7 cut(s) 101, 107, 334, 340, 346, 414, 428
FatI CATG 4 cut(s) 99, 105, 344, 412
FbaI TGATCA 2 cut(s) 102, 475
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 2 cut(s) 164, 189
FriOI GRGCYC 2 cut(s) 9, 200
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 422
GluI GCNGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 307
HaeIII GGCC 3 cut(s) 24, 198, 224
Hin1II CATG 4 cut(s) 103, 109, 348, 416
HinfI GANTC 1 cut(s) 144
HphI GGTGA 2 cut(s) 173, 307
Hpy188I TCNGA 5 cut(s) 48, 58, 143, 248, 385
Hpy188III TCNNGA 3 cut(s) 116, 122, 286
HpyAV CCTTC 3 cut(s) 14, 362, 424
HpyCH4III ACNGT 2 cut(s) 449, 466
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 220, 302, 398, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 418, 431, 440
HpyF3I CTNAG 3 cut(s) 87, 245, 458
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 4 cut(s) 103, 109, 348, 416
Ksp22I TGATCA 2 cut(s) 102, 475
Kzo9I GATC 3 cut(s) 102, 118, 475
LmnI GCTCC 3 cut(s) 4, 12, 257
LweI GCATC 2 cut(s) 81, 333
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 15
MalI GATC 3 cut(s) 104, 120, 477
MboI GATC 3 cut(s) 102, 118, 475
MboII GAAGA 1 cut(s) 372
MfeI CAATTG 1 cut(s) 481
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 9, 200
MluCI AATT 3 cut(s) 179, 303, 481
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 4 cut(s) 120, 248, 254, 286
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 104, 343
MunI CAATTG 1 cut(s) 481
Mva1269I GAATGC 2 cut(s) 239, 304
MwoI GCNNNNNNNGC 3 cut(s) 418, 431, 440
NdeII GATC 3 cut(s) 102, 118, 475
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 4 cut(s) 103, 109, 348, 416
NlaIV GGNNCC 2 cut(s) 198, 259
NspI RCATGY 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 389
PciI ACATGT 1 cut(s) 344
PctI GAATGC 2 cut(s) 239, 304
PdmI GAANNNNTTC 1 cut(s) 239
PflMI CCANNNNNTGG 2 cut(s) 16, 231
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 16
PscI ACATGT 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 198, 259
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 196, 197
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 3 cut(s) 14, 78, 313
RsaNI GTAC 3 cut(s) 13, 77, 312
RseI CAYNNNNRTG 2 cut(s) 104, 343
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 3 cut(s) 102, 118, 475
Sau96I GGNCC 2 cut(s) 196, 197
SchI GAGTC 1 cut(s) 153
SduI GDGCHC 2 cut(s) 9, 200
SetI ASST 7 cut(s) 9, 18, 297, 373, 403, 423, 427
SfaNI GCATC 2 cut(s) 81, 333
SfcI CTRYAG 2 cut(s) 396, 465
SmiMI CAYNNNNRTG 2 cut(s) 104, 343
Sse9I AATT 3 cut(s) 179, 303, 481
SsiI CCGC 1 cut(s) 440
SspMI CTAG 1 cut(s) 422
SstI GAGCTC 1 cut(s) 9
TaaI ACNGT 2 cut(s) 449, 466
TaiI ACGT 1 cut(s) 18
TasI AATT 3 cut(s) 179, 303, 481
TauI GCSGC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 36, 469
TspDTI ATGAA 3 cut(s) 366, 429, 443
TspRI CASTG 2 cut(s) 36, 469
Van91I CCANNNNNTGG 2 cut(s) 16, 231
XceI RCATGY 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.