Rh7DG170300

amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008864
Physical Location & Seq
Reverse (-)
15242284 .. 15243891
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG170300.1

Sequence Viewer

Length: 981 bp
ATGAAGACCTATCCTGATGTTGGTTTCCATGCATTCGGGTCTAAAGGCAGGATGTTTGTGTCCATTTTCATGTATCTTGAGCTTTACCTAGTCTCAATAGGATTCTTGATAATGGAAGCTGATAATTTAGAAAGGTTTTTCCCACAGGCTGGGATCAATCTACGCGGATATCACATAGGGGGAAAACCATTTTTTACAATGGTTGTGGGGCTAATAATATTACCTACAATGTGGTTGAAAAACCTACGATTGCTTGCCTACGTCTCAATGTGTGGCTTTCTATCAGCCATTATCATCGTCGTCTCAATTGTTTGTGTTGGTATTGATGGAGTAGGGTTCTCTAAAAGAGGGAAGATATTTGATTTGACCGGAATTCCTACCTCTCTTAGTTTGTTTGCATTTTGTTATGGAGTTCATTCCGTTACTCCCATGGTATACTCTTCTATGAGACATAGAAATCATTTCTACAAGATTTTGTTCATCGTTTTTCCCCTCTGCACTGTGAACTACATTATCCTAGCTGTTCTTGGCTACTTAATGTTTGGCGATGATGTTCAATCTCAAGTGATAATGAACCTGCCTACGAGTAAAGTCATTTCAAAAATAGCAATATACACCACTTTAGCGATCCCCATCGTCAAGTATGCACTCCTAATGACACCTTTAGCAAATGCCATTGAGAACAGCTTGCCGAAAAAATGGAATAACATGCTCATTTTCATGTTCATAAGAACACTGCTATTAGTGAGCACAGTTGTATTGGCCATACTTTTTCCATATTTTGACACACTGATGGCACTTGTTGGAGCCATTCTTTGTGTCACTATGTCCATGTTGCTTCCATGTATATGTTACTTGAAGATATTCAGATTATACCGGAAGTGTAGCGTCGAAGTTGCAATTATTGGATGTATTATAGTTATCGGTGTGGCTGTTGGTGTACTAGGTACATACACATCTGTTAAAGAGAGATTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

326

Amino Acids

36.41

Weight (kDa)

9.36

Isoelectric Point (pI)

20.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 2 - 320 1.4e-53 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 585
AccB7I CCANNNNNTGG 1 cut(s) 149
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 165
AciI CCGC 1 cut(s) 165
AclWI GGATC 2 cut(s) 161, 622
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 1 cut(s) 372
AfaI GTAC 2 cut(s) 942, 949
AfiI CCNNNNNNNGG 2 cut(s) 20, 149
AgsI TTSAA 4 cut(s) 238, 557, 600, 859
AluBI AGCT 4 cut(s) 82, 119, 521, 687
AluI AGCT 4 cut(s) 82, 119, 521, 687
Alw21I GWGCWC 1 cut(s) 752
Alw26I GTCTC 4 cut(s) 97, 268, 307, 442
AlwI GGATC 2 cut(s) 161, 622
AoxI GGCC 1 cut(s) 762
ApoI RAATTY 1 cut(s) 372
Asp700I GAANNNNTTC 1 cut(s) 863
BalI TGGCCA 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 752
BccI CCATC 3 cut(s) 320, 641, 787
BcoDI GTCTC 4 cut(s) 97, 268, 307, 442
BfaI CTAG 3 cut(s) 89, 518, 944
BfuAI ACCTGC 1 cut(s) 585
BmiI GGNNCC 1 cut(s) 808
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 2 cut(s) 98, 546
BsaBI GATNNNNATC 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 429
BsaWI WCCGGW 2 cut(s) 368, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 149
Bse8I GATNNNNATC 1 cut(s) 632
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 57, 914
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 2 cut(s) 20, 149
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 481
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 764
BsiHKAI GWGCWC 1 cut(s) 752
BsiSI CCGG 2 cut(s) 369, 877
BslI CCNNNNNNNGG 2 cut(s) 20, 149
BsmAI GTCTC 4 cut(s) 97, 268, 307, 442
BsmBI CGTCTC 2 cut(s) 268, 307
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 752
Bsp143I GATC 2 cut(s) 153, 627
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 764
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 585
BspPI GGATC 2 cut(s) 161, 622
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 2 cut(s) 153, 627
BssNAI GTATAC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 429
Bst1107I GTATAC 1 cut(s) 436
Bst4CI ACNGT 2 cut(s) 502, 754
Bst6I CTCTTC 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 255, 689
BstDEI CTNAG 1 cut(s) 386
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 57, 914
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 2 cut(s) 156, 630
BstMAI GTCTC 4 cut(s) 97, 268, 307, 442
BstMBI GATC 2 cut(s) 153, 627
BstNSI RCATGY 1 cut(s) 712
BstUI CGCG 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 11
BstZ17I GTATAC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 764
BtgI CCRYGG 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 2 cut(s) 57, 914
BtsI GCAGTG 1 cut(s) 734
BtsIMutI CAGTG 3 cut(s) 498, 734, 788
BveI ACCTGC 1 cut(s) 585
Cac8I GCNNGC 2 cut(s) 255, 689
CseI GACGC 1 cut(s) 877
Csp6I GTAC 2 cut(s) 941, 948
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 7 cut(s) 29, 70, 430, 709, 721, 832, 843
CviQI GTAC 2 cut(s) 941, 948
DdeI CTNAG 1 cut(s) 386
DpnI GATC 2 cut(s) 155, 629
DpnII GATC 2 cut(s) 153, 627
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 429
Eco32I GATATC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 372
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 429
Esp3I CGTCTC 2 cut(s) 268, 307
FaeI CATG 7 cut(s) 32, 73, 433, 712, 724, 835, 846
FatI CATG 7 cut(s) 28, 69, 429, 708, 720, 831, 842
FblI GTMKAC 1 cut(s) 435
FokI GGATG 2 cut(s) 64, 921
FspBI CTAG 3 cut(s) 89, 518, 944
GsaI CCCAGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 764
HapII CCGG 2 cut(s) 369, 877
HgaI GACGC 1 cut(s) 877
Hin1II CATG 7 cut(s) 32, 73, 433, 712, 724, 835, 846
HinfI GANTC 1 cut(s) 102
HpaII CCGG 2 cut(s) 369, 877
Hpy166II GTNNAC 3 cut(s) 436, 505, 941
Hpy188I TCNGA 1 cut(s) 869
Hpy188III TCNNGA 3 cut(s) 14, 77, 106
Hpy8I GTNNAC 3 cut(s) 436, 505, 941
Hpy99I CGWCG 2 cut(s) 302, 893
HpyCH4III ACNGT 2 cut(s) 502, 754
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 5 cut(s) 32, 398, 498, 647, 899
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 7 cut(s) 32, 73, 433, 712, 724, 835, 846
Kzo9I GATC 2 cut(s) 153, 627
LmnI GCTCC 1 cut(s) 806
LpnPI CCDG 7 cut(s) 27, 34, 131, 135, 382, 590, 890
MaeI CTAG 3 cut(s) 89, 518, 944
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 3 cut(s) 421, 820, 851
MalI GATC 2 cut(s) 155, 629
MboI GATC 2 cut(s) 153, 627
MboII GAAGA 4 cut(s) 16, 364, 432, 871
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 752
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 4 cut(s) 124, 306, 372, 900
MluNI TGGCCA 1 cut(s) 764
MmeI TCCRAC 1 cut(s) 784
MnlI CCTC 3 cut(s) 341, 391, 503
Mox20I TGGCCA 1 cut(s) 764
Mph1103I ATGCAT 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 863
MscI TGGCCA 1 cut(s) 764
MseI TTAA 2 cut(s) 536, 963
MslI CAYNNNNRTG 4 cut(s) 68, 719, 791, 847
Msp20I TGGCCA 1 cut(s) 764
MspI CCGG 2 cut(s) 369, 877
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 32
MvnI CGCG 1 cut(s) 165
NcoI CCATGG 1 cut(s) 429
NdeII GATC 2 cut(s) 153, 627
NlaIII CATG 7 cut(s) 32, 73, 433, 712, 724, 835, 846
NlaIV GGNNCC 1 cut(s) 808
NmuCI GTSAC 1 cut(s) 820
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 1 cut(s) 712
PctI GAATGC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 808
RsaI GTAC 2 cut(s) 942, 949
RsaNI GTAC 2 cut(s) 941, 948
RseI CAYNNNNRTG 4 cut(s) 68, 719, 791, 847
SaqAI TTAA 2 cut(s) 536, 963
Sau3AI GATC 2 cut(s) 153, 627
SduI GDGCHC 1 cut(s) 752
SmiMI CAYNNNNRTG 4 cut(s) 68, 719, 791, 847
SmlI CTYRAG 2 cut(s) 77, 561
SmoI CTYRAG 2 cut(s) 77, 561
Sse9I AATT 4 cut(s) 124, 306, 372, 900
SsiI CCGC 1 cut(s) 165
SspI AATATT 1 cut(s) 219
SspMI CTAG 3 cut(s) 89, 518, 944
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 502, 754
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 891
TasI AATT 4 cut(s) 124, 306, 372, 900
TatI WGTACW 1 cut(s) 940
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 2 cut(s) 536, 963
Tru9I TTAA 2 cut(s) 536, 963
TscAI CASTG 3 cut(s) 505, 741, 795
TseFI GTSAC 1 cut(s) 820
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 7 cut(s) 17, 58, 404, 469, 587, 709, 715
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 3 cut(s) 505, 741, 795
Van91I CCANNNNNTGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 372
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 3 cut(s) 89, 518, 944
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.