RLG00000003901

amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008864
Physical Location & Seq
Forward (+)
54084067 .. 54085439
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003901

Sequence Viewer

Length: 1203 bp
ATGTTGGAAGATCAGCTAACGGAAGTTCAAGAAGCTAAAGGAACAAGCTTCCTGAAAACTTGCTTCAACATGATCAATGCCCTGACAGGACTTGGGCTCATTACAACCCCTTACGCAGTTTCGAGGACAGGGTGGTCAAGCCTTCCTTTTCTTATAGCTACTGGAATTATAAGTTGTTATGCTGGGATCTTACTCACCAAATGCTTGAACACCGATGCATCAATGAAGACCTATCCTGATATTGGTTTCCATGCATTCGGGTCTAAAGGCAGGATGTTCGTGTCCATTTTCATGTATCTTGAGCTTTACCTAGTCTCAATAGGATTCTTGATAATGGAAGCTGATAATTTGGAAAGGTTTTTCCCACAGGCTGGGATCAATCTACGCGGATATCACCTAGGGGGAAAACCATTTTTTACAATGGTTGTGGGGCTAATAATATTACCTACAATGTGGTTGAAAAACCTACAATTGCTTGCCTACGTCTCAATGTGTGGCTTTCTATCAGCCATTATCATCGTCGTCTCAATTGTTTTTGTTGGTATTGATGGAGTAGGGTTCTCTAAAAGAGGGAAGATATTTGATTTGACCGGAATTCCTACCTCTCTTAGTTTGTTTGCATTTTGTTATGGAGTTCATTCCGTTACTCCCATGGTATACTCTTCTATGAGACATAGAAATCATTTCTACAAGATTTTGTTCATCATTTTTCCCCTCTGCACTGTGAACTACATTATCCTAGCTGTTCTTGGCTACTTAATGTTTGGCGATGATGTTCAATCTCAAGTGATAATGAACCTGCCTACAAGTAAAGTCATCTCAAAAATAGCAATATATACCACTTTAGCGATCCCCATCGTCAAGTATGCACTCCTAATGACACCTTTAGCAAATGCCATTGACAACAGCTTGCCAAAAAAATGGAATAACATGCTCATTTTCATGTTCATAAGAACACTGCTATTAGTGAGCACAGTTGTATTGGCCATAGTTTTTCCATATTTTGACACACTGATGGCACTTGTTGGAGCCATTCTTTGTGTCACTATGTCCATGTTGCTTCCATGTATATGTTACTTGAAGATATTCAGATTATACCGGAAGTGTAGCGTCGAAGTTGCAATAATTGGATGTATTATAGTTATCGGTGTGGCTGTTGGTGTACTAGGTACATACACATCTGTTAAAGAGAGATTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

401

Amino Acids

44.33

Weight (kDa)

9.09

Isoelectric Point (pI)

21.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 14 - 394 3.5e-66 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
AasI GACNNNNNNGTC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 807
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 1 cut(s) 657
AccII CGCG 1 cut(s) 387
AciI CCGC 1 cut(s) 387
AclWI GGATC 3 cut(s) 194, 383, 844
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 1 cut(s) 594
AfaI GTAC 2 cut(s) 1164, 1171
AfiI CCNNNNNNNGG 2 cut(s) 242, 371
AgsI TTSAA 6 cut(s) 29, 67, 208, 460, 779, 1081
AluBI AGCT 8 cut(s) 16, 35, 48, 158, 304, 341, 743, 909
AluI AGCT 8 cut(s) 16, 35, 48, 158, 304, 341, 743, 909
Alw21I GWGCWC 1 cut(s) 974
Alw26I GTCTC 4 cut(s) 319, 490, 529, 664
AlwI GGATC 3 cut(s) 194, 383, 844
AoxI GGCC 1 cut(s) 984
ApoI RAATTY 1 cut(s) 594
Asp700I GAANNNNTTC 1 cut(s) 1085
AspA2I CCTAGG 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 187, 386
AvrII CCTAGG 1 cut(s) 397
BalI TGGCCA 1 cut(s) 986
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 974
BccI CCATC 3 cut(s) 542, 863, 1009
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 4 cut(s) 319, 490, 529, 664
BfaI CTAG 4 cut(s) 311, 398, 740, 1166
BfuAI ACCTGC 1 cut(s) 807
BlnI CCTAGG 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 1030
BmsI GCATC 2 cut(s) 205, 227
BpiI GAAGAC 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 320, 768
BsaBI GATNNNNATC 1 cut(s) 854
BsaJI CCNNGG 2 cut(s) 397, 651
BsaWI WCCGGW 2 cut(s) 590, 1098
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 371
Bse1I ACTGG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 854
BseDI CCNNGG 2 cut(s) 397, 651
BseGI GGATG 2 cut(s) 279, 1136
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 2 cut(s) 242, 371
BseNI ACTGG 1 cut(s) 166
BseYI CCCAGC 2 cut(s) 182, 371
BsgI GTGCAG 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 986
BsiHKAI GWGCWC 1 cut(s) 974
BsiSI CCGG 2 cut(s) 591, 1099
BslI CCNNNNNNNGG 2 cut(s) 242, 371
BsmAI GTCTC 4 cut(s) 319, 490, 529, 664
BsmBI CGTCTC 2 cut(s) 490, 529
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 986
Bsp1286I GDGCHC 2 cut(s) 99, 974
Bsp143I GATC 5 cut(s) 10, 72, 186, 375, 849
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 1 cut(s) 387
BspANI GGCC 1 cut(s) 986
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 1030
BspMI ACCTGC 1 cut(s) 807
BspPI GGATC 3 cut(s) 194, 383, 844
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 397, 651
BssMI GATC 5 cut(s) 10, 72, 186, 375, 849
BssNAI GTATAC 1 cut(s) 658
BssT1I CCWWGG 2 cut(s) 397, 651
Bst1107I GTATAC 1 cut(s) 658
Bst4CI ACNGT 2 cut(s) 724, 976
Bst6I CTCTTC 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 477, 911
BstDEI CTNAG 1 cut(s) 608
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 279, 1136
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 5 cut(s) 13, 75, 189, 378, 852
BstMAI GTCTC 4 cut(s) 319, 490, 529, 664
BstMBI GATC 5 cut(s) 10, 72, 186, 375, 849
BstNSI RCATGY 1 cut(s) 934
BstUI CGCG 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 921
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 658
BsuRI GGCC 1 cut(s) 986
BtgI CCRYGG 1 cut(s) 651
BtgZI GCGATG 1 cut(s) 783
BtsCI GGATG 2 cut(s) 279, 1136
BtsI GCAGTG 1 cut(s) 956
BtsIMutI CAGTG 3 cut(s) 720, 956, 1010
BveI ACCTGC 1 cut(s) 807
Cac8I GCNNGC 2 cut(s) 477, 911
CseI GACGC 1 cut(s) 1099
Csp6I GTAC 2 cut(s) 1163, 1170
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 8 cut(s) 70, 251, 292, 652, 931, 943, 1054, 1065
CviQI GTAC 2 cut(s) 1163, 1170
DdeI CTNAG 1 cut(s) 608
DpnI GATC 5 cut(s) 12, 74, 188, 377, 851
DpnII GATC 5 cut(s) 10, 72, 186, 375, 849
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 984
Eam1104I CTCTTC 1 cut(s) 667
EarI CTCTTC 1 cut(s) 667
Eco130I CCWWGG 2 cut(s) 397, 651
Eco24I GRGCYC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 594
EcoRV GATATC 1 cut(s) 392
EcoT14I CCWWGG 2 cut(s) 397, 651
EcoT22I ATGCAT 2 cut(s) 220, 256
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 397, 651
Esp3I CGTCTC 2 cut(s) 490, 529
FaeI CATG 8 cut(s) 73, 254, 295, 655, 934, 946, 1057, 1068
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 8 cut(s) 69, 250, 291, 651, 930, 942, 1053, 1064
FbaI TGATCA 1 cut(s) 72
FblI GTMKAC 1 cut(s) 657
FokI GGATG 2 cut(s) 286, 1143
FriOI GRGCYC 1 cut(s) 99
FspBI CTAG 4 cut(s) 311, 398, 740, 1166
GsaI CCCAGC 2 cut(s) 186, 375
HaeIII GGCC 1 cut(s) 986
HapII CCGG 2 cut(s) 591, 1099
HgaI GACGC 1 cut(s) 1099
Hin1II CATG 8 cut(s) 73, 254, 295, 655, 934, 946, 1057, 1068
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 1 cut(s) 324
HpaII CCGG 2 cut(s) 591, 1099
HphI GGTGA 2 cut(s) 187, 386
Hpy166II GTNNAC 3 cut(s) 658, 727, 1163
Hpy188I TCNGA 1 cut(s) 1091
Hpy188III TCNNGA 5 cut(s) 29, 52, 236, 299, 328
Hpy8I GTNNAC 3 cut(s) 658, 727, 1163
Hpy99I CGWCG 2 cut(s) 524, 1115
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 724, 976
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 6 cut(s) 218, 254, 620, 720, 869, 1121
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 8 cut(s) 73, 254, 295, 655, 934, 946, 1057, 1068
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 5 cut(s) 10, 72, 186, 375, 849
LmnI GCTCC 1 cut(s) 1028
LweI GCATC 2 cut(s) 205, 227
MaeI CTAG 4 cut(s) 311, 398, 740, 1166
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 3 cut(s) 643, 1042, 1073
MalI GATC 5 cut(s) 12, 74, 188, 377, 851
MboI GATC 5 cut(s) 10, 72, 186, 375, 849
MboII GAAGA 5 cut(s) 20, 238, 586, 654, 1093
MfeI CAATTG 2 cut(s) 470, 528
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 99, 974
MlsI TGGCCA 1 cut(s) 986
MluCI AATT 6 cut(s) 165, 346, 470, 528, 594, 1125
MluNI TGGCCA 1 cut(s) 986
MmeI TCCRAC 1 cut(s) 1006
MnlI CCTC 4 cut(s) 117, 563, 613, 725
Mox20I TGGCCA 1 cut(s) 986
Mph1103I ATGCAT 2 cut(s) 220, 256
MroXI GAANNNNTTC 1 cut(s) 1085
MscI TGGCCA 1 cut(s) 986
MseI TTAA 2 cut(s) 758, 1185
MslI CAYNNNNRTG 4 cut(s) 290, 941, 1013, 1069
Msp20I TGGCCA 1 cut(s) 986
MspI CCGG 2 cut(s) 591, 1099
MunI CAATTG 2 cut(s) 470, 528
Mva1269I GAATGC 1 cut(s) 254
MvnI CGCG 1 cut(s) 387
NcoI CCATGG 1 cut(s) 651
NdeII GATC 5 cut(s) 10, 72, 186, 375, 849
NlaIII CATG 8 cut(s) 73, 254, 295, 655, 934, 946, 1057, 1068
NlaIV GGNNCC 1 cut(s) 1030
NmuCI GTSAC 1 cut(s) 1042
NsiI ATGCAT 2 cut(s) 220, 256
NspI RCATGY 1 cut(s) 934
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 1 cut(s) 324
PflMI CCANNNNNTGG 1 cut(s) 371
PsiI TTATAA 1 cut(s) 170
PspFI CCCAGC 2 cut(s) 182, 371
PspN4I GGNNCC 1 cut(s) 1030
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 2 cut(s) 1164, 1171
RsaNI GTAC 2 cut(s) 1163, 1170
RseI CAYNNNNRTG 4 cut(s) 290, 941, 1013, 1069
SaqAI TTAA 2 cut(s) 758, 1185
Sau3AI GATC 5 cut(s) 10, 72, 186, 375, 849
SduI GDGCHC 2 cut(s) 99, 974
SfaNI GCATC 2 cut(s) 205, 227
SmiMI CAYNNNNRTG 4 cut(s) 290, 941, 1013, 1069
SmlI CTYRAG 2 cut(s) 299, 783
SmoI CTYRAG 2 cut(s) 299, 783
Sse9I AATT 6 cut(s) 165, 346, 470, 528, 594, 1125
SsiI CCGC 1 cut(s) 387
SspI AATATT 1 cut(s) 441
SspMI CTAG 4 cut(s) 311, 398, 740, 1166
StyI CCWWGG 2 cut(s) 397, 651
TaaI ACNGT 2 cut(s) 724, 976
TaiI ACGT 1 cut(s) 486
TaqI TCGA 2 cut(s) 122, 1113
TasI AATT 6 cut(s) 165, 346, 470, 528, 594, 1125
TatI WGTACW 1 cut(s) 1162
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 2 cut(s) 758, 1185
Tru9I TTAA 2 cut(s) 758, 1185
TscAI CASTG 3 cut(s) 727, 963, 1017
TseFI GTSAC 1 cut(s) 1042
Tsp45I GTSAC 1 cut(s) 1042
TspDTI ATGAA 7 cut(s) 239, 280, 626, 691, 809, 931, 937
TspGWI ACGGA 2 cut(s) 35, 631
TspRI CASTG 3 cut(s) 727, 963, 1017
Van91I CCANNNNNTGG 1 cut(s) 371
XapI RAATTY 1 cut(s) 594
XceI RCATGY 1 cut(s) 934
XmaJI CCTAGG 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 657
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 4 cut(s) 311, 398, 740, 1166
Zsp2I ATGCAT 2 cut(s) 220, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.