Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008864

Physical Location & Seq

Genomic Coordinates Forward (+)

57701733 .. 57704870

Gene Structure 3138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0446000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCCTTTGAAGCTTCTAATGGAAGAGGGCTTCAGCCCAGTTTATTCAATGTGGATGATATCGAGTTAAATACAAATTGGGAAGATGTGACTTGTCCTATATGTTTGGATTTCCCTCACAATGGCGTACTCCTACAGTGCACATCACACAATAATGGATGCCGTCCTTTTGTCTGTGACACAAATCACTTGCACTCAAATTGTTTGGACCGTTTCAAAAATGCAAATGGTATGTCATCTCCTTCAAAATCTGATGCTAGTCCGACAAGTGACACTGAGCCAGTGGCATCAGAAGACAACTGCAAGCCAACTTGCCCATTGTGTAGGGGTGAAGTGACTGGGTGGGTTGTTGTCGATAAGGCTCGTGTTCATCTCGATGTGAAGAAGCGTTGTTGCGAGGAGCAACGATGCACATTTATGGGTACATACTTGGAATTGCAAAAACATGCTGAACTGGAGCACCCTCATTCTCAACCATCAAAAATTGATCCTGCTCGGCAGCTTGATTGGGAAAATTTCCAACAGTCTTCGGAGATCATAGATGTTTTGAGCACTATACATTCGGAAGTCCCTCGGGGGGTTGTTTTAGGAGATTATGTGATTGAATATGGTGATGATGAGACTGGGGATGAGTTCGAGGACTTCCCTGGCGACGAACGTAACTGGTGGACCTCCTGTATATTGTATCAGGTATTTGATAACTTGAGGAATTCCAGAAATAGAAGAAGGTCAAGAGTTGGTGACACTAGAAGAGGAGGCCGCCGAGCAAGCTATGATGCAAATTCTGATGACGGGTCTGTGACATCTGTTGACTTCACAGACTACAGGGCAGATGAGATTGATGATGAGTTTATGAGTTCAAGTGGCTCCTCCAGGGGTGGCTCAAGTCATCGCAGTTCCCGTAGACGACGCTCTCGCTTCTATGACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

310

Amino Acids

35.11

Weight (kDa)

5.05

Isoelectric Point (pI)

65.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1644	PF07800	28 - 184	1.6e-63	Protein of unknown function (DUF1644)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02190
rosa_chinensis	RchiOBHm_Chr7g0182211 RchiOBHm_Chr7g0197941
rosa_laevigata	RLG00000003901
rosa_multiflora	Rmu_sc0000003.1_g000015 Rmu_sc0001082.1_g000012 Rmu_sc0016104.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258090 Rroxscaffold_3G00271420
rosa_rugosa	Rorug06G0446000 Rorug06G0446000 Rorug06G0446000 Rorug06G0446000 Rorug07G0044700 Rorug07G0044800
rosa_samantha	Rh7BG049200 Rh7BG171100 Rh7CG050500 Rh7CG177700 Rh7DG048400 Rh7DG170300
rosa_wichuraiana	Rw7G004020 Rw7G014680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	904
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	3 cut(s)	514, 709, 781
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	2 cut(s)	129, 424
AfiI	CCNNNNNNNGG	2 cut(s)	122, 577
AgsI	TTSAA	6 cut(s)	11, 49, 217, 246, 605, 861
AjnI	CCWGG	2 cut(s)	646, 872
AluBI	AGCT	3 cut(s)	14, 502, 771
AluI	AGCT	3 cut(s)	14, 502, 771
Alw21I	GWGCWC	3 cut(s)	143, 462, 554
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	2 cut(s)	3, 757
ApaLI	GTGCAC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	3 cut(s)	514, 709, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	2 cut(s)	208, 669
AsuHPI	GGTGA	3 cut(s)	341, 623, 752
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	2 cut(s)	208, 669
BaeGI	GKGCMC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	300, 519
Bbv12I	GWGCWC	3 cut(s)	143, 462, 554
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	2 cut(s)	648, 874
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	2 cut(s)	258, 747
BfmI	CTRYAG	2 cut(s)	134, 823
BisI	GCNGC	2 cut(s)	500, 760
BlsI	GCNGC	2 cut(s)	501, 761
Bme1390I	CCNGG	2 cut(s)	648, 874
Bme18I	GGWCC	2 cut(s)	208, 669
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	2 cut(s)	208, 669
BmiI	GGNNCC	1 cut(s)	868
BmrFI	CCNGG	2 cut(s)	648, 874
BmrI	ACTGGG	3 cut(s)	33, 348, 633
BmsI	GCATC	5 cut(s)	149, 244, 296, 398, 766
BmuI	ACTGGG	3 cut(s)	33, 348, 633
BpiI	GAAGAC	2 cut(s)	300, 519
BpmI	CTGGAG	2 cut(s)	476, 856
BpuEI	CTTGAG	2 cut(s)	724, 868
BsaJI	CCNNGG	3 cut(s)	572, 646, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 577
Bse1I	ACTGG	6 cut(s)	39, 281, 343, 459, 628, 668
BseBI	CCWGG	2 cut(s)	648, 874
BseDI	CCNNGG	3 cut(s)	572, 646, 873
BseGI	GGATG	3 cut(s)	61, 164, 634
BseLI	CCNNNNNNNGG	2 cut(s)	122, 577
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	6 cut(s)	39, 281, 343, 459, 628, 668
BseRI	GAGGAG	3 cut(s)	413, 768, 859
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	2 cut(s)	5, 759
BsiHKAI	GWGCWC	3 cut(s)	143, 462, 554
BsiHKCI	CYCGRG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	122, 577
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	5, 759
BsoBI	CYCGRG	1 cut(s)	573
Bsp1286I	GDGCHC	3 cut(s)	143, 462, 554
Bsp143I	GATC	2 cut(s)	487, 534
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	2 cut(s)	5, 759
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	868
BspPI	GGATC	1 cut(s)	482
BsrI	ACTGG	6 cut(s)	39, 281, 343, 459, 628, 668
BssECI	CCNNGG	3 cut(s)	572, 646, 873
BssMI	GATC	2 cut(s)	487, 534
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	648, 874
Bst4CI	ACNGT	4 cut(s)	138, 212, 525, 929
Bst6I	CTCTTC	2 cut(s)	19, 745
BstC8I	GCNNGC	2 cut(s)	305, 769
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	3 cut(s)	61, 164, 634
BstKTI	GATC	2 cut(s)	490, 537
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	2 cut(s)	487, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 768
BstNI	CCWGG	2 cut(s)	648, 874
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	646, 872
BstSFI	CTRYAG	2 cut(s)	134, 823
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	2 cut(s)	300, 519
BsuRI	GGCC	2 cut(s)	5, 759
BtgZI	GCGATG	1 cut(s)	875
BtsCI	GGATG	3 cut(s)	61, 164, 634
BtsIMutI	CAGTG	3 cut(s)	143, 273, 288
Cac8I	GCNNGC	2 cut(s)	305, 769
Cfr13I	GGNCC	2 cut(s)	208, 669
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	2 cut(s)	128, 423
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	2 cut(s)	128, 423
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	489, 536
DpnII	GATC	2 cut(s)	487, 534
Eam1104I	CTCTTC	2 cut(s)	19, 745
EarI	CTCTTC	2 cut(s)	19, 745
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	208, 669
Eco57I	CTGAAG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	646, 872
EcoRV	GATATC	1 cut(s)	61
FaeI	CATG	1 cut(s)	449
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	904
Fnu4HI	GCNGC	2 cut(s)	500, 760
FokI	GGATG	3 cut(s)	68, 171, 641
Fsp4HI	GCNGC	2 cut(s)	500, 760
FspBI	CTAG	2 cut(s)	258, 747
GluI	GCNGC	2 cut(s)	500, 760
GsuI	CTGGAG	2 cut(s)	476, 856
HaeIII	GGCC	2 cut(s)	5, 759
HgaI	GACGC	1 cut(s)	918
Hin1II	CATG	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	3 cut(s)	341, 623, 752
Hpy166II	GTNNAC	4 cut(s)	141, 669, 811, 905
Hpy188I	TCNGA	6 cut(s)	253, 264, 292, 532, 565, 787
Hpy188III	TCNNGA	3 cut(s)	374, 714, 732
Hpy8I	GTNNAC	4 cut(s)	141, 669, 811, 905
Hpy99I	CGWCG	2 cut(s)	656, 912
HpyAV	CCTTC	2 cut(s)	252, 720
HpyCH4III	ACNGT	4 cut(s)	138, 212, 525, 929
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	7 cut(s)	141, 193, 224, 303, 411, 439, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 768
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	487, 534
LmnI	GCTCC	3 cut(s)	400, 457, 872
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	5 cut(s)	149, 244, 296, 398, 766
MaeI	CTAG	2 cut(s)	258, 747
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	7 cut(s)	88, 176, 269, 334, 659, 740, 799
MalI	GATC	2 cut(s)	489, 536
MboI	GATC	2 cut(s)	487, 534
MboII	GAAGA	7 cut(s)	36, 95, 305, 394, 519, 735, 762
MhlI	GDGCHC	3 cut(s)	143, 462, 554
MluCI	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
MmeI	TCCRAC	2 cut(s)	287, 544
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	3 cut(s)	153, 375, 416
MspR9I	CCNGG	2 cut(s)	648, 874
MvaI	CCWGG	2 cut(s)	648, 874
MwoI	GCNNNNNNNGC	2 cut(s)	11, 768
NdeII	GATC	2 cut(s)	487, 534
NlaIII	CATG	1 cut(s)	449
NlaIV	GGNNCC	1 cut(s)	868
NmeAIII	GCCGAG	2 cut(s)	475, 788
NmuCI	GTSAC	6 cut(s)	88, 176, 269, 334, 740, 799
NspI	RCATGY	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	898
PkrI	GCNGC	2 cut(s)	501, 761
Psp6I	CCWGG	2 cut(s)	646, 872
PspGI	CCWGG	2 cut(s)	646, 872
PspN4I	GGNNCC	1 cut(s)	868
PspPI	GGNCC	2 cut(s)	208, 669
RsaI	GTAC	2 cut(s)	129, 424
RsaNI	GTAC	2 cut(s)	128, 423
RseI	CAYNNNNRTG	3 cut(s)	153, 375, 416
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	500, 760
Sau3AI	GATC	2 cut(s)	487, 534
Sau96I	GGNCC	2 cut(s)	208, 669
ScrFI	CCNGG	2 cut(s)	648, 874
SduI	GDGCHC	3 cut(s)	143, 462, 554
SetI	ASST	7 cut(s)	16, 504, 661, 674, 693, 731, 773
SfaNI	GCATC	5 cut(s)	149, 244, 296, 398, 766
SfcI	CTRYAG	2 cut(s)	134, 823
SinI	GGWCC	2 cut(s)	208, 669
SmiMI	CAYNNNNRTG	3 cut(s)	153, 375, 416
SmlI	CTYRAG	2 cut(s)	703, 883
SmoI	CTYRAG	2 cut(s)	703, 883
Sse9I	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
SsiI	CCGC	1 cut(s)	760
SspMI	CTAG	2 cut(s)	258, 747
StyD4I	CCNGG	2 cut(s)	646, 872
TaaI	ACNGT	4 cut(s)	138, 212, 525, 929
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	4 cut(s)	63, 354, 375, 636
TasI	AATT	7 cut(s)	76, 199, 434, 483, 514, 709, 781
TauI	GCSGC	1 cut(s)	762
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	3 cut(s)	143, 280, 288
TseFI	GTSAC	6 cut(s)	88, 176, 269, 334, 740, 799
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	6 cut(s)	88, 176, 269, 334, 740, 799
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	3 cut(s)	143, 280, 288
VneI	GTGCAC	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	208, 669
XapI	RAATTY	3 cut(s)	514, 709, 781
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	904
XspI	CTAG	2 cut(s)	258, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.