Rmu_sc0016104.1_g000005

amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016104.1
OG0008864
Physical Location & Seq
Forward (+)
12953 .. 14528
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016104.1_g000005.1.cds

Sequence Viewer

Length: 1290 bp
atgttggaagatcagctaacggaagtccaagaagctaaaggaacaagcttcctgaaaacttgcttcaacatgatcaatgccctgacaggacttgggctcattacaaccccttacgcagtttcgaggactgggtggtcaagccttccttttcttatagctactggaattataagttgctatgctgggatcttactcaccaaatgcttgaacaccgatgcatcaatgaagacctatcctgatgttggtttccatgcattcgggtctaaaggcaggatgtttgtgtccattttcatgtatcttgagctttacctagtctcaataggattcttgataatggaagctgataatttagaaaggtttttcccacaggctgggatcaatctacgcggatatcacatagggggaaaaccattttttacaatggttgtggggctaataatattacctacaatgtggttgaaaaacctacgattgcttgcctacgtctcaatgtgtggctttctatcagccattatcatcgtcgtctcaattgtttgtgttggtattgatggagtagggttctctaaaagagggaagatatttgatttgaccggaattcctacctctcttagtttgtttgcattttgttatggagttcattccgttactcccatggtatactcttctatgagacatagaaatcatttctacaagattttgttcatcgtttttcccctctgcactgtgaactacattatcctagctgttcttggctacttaatgtttggcgatgatgttcaatctcaagtgataatgaacctgcctacaagtaaagtcatttcaaaaatagcaatatacaccactttagcgatccccatcgtcaagtatgcactcctaatgacacctttagcaaatgccattgagaacagcttgccgaaaaaatggaataacatgctcattttcatgttcataagaacactgctattagtgagcacagttgtattggccatactttttccatattttgacacactgatggcacttgttggagccattctttgtgtcactatgtccatgttgcttccatgtatatgttacttgaagatattcagattataccggaagtgtagcgtcgaagttgcaattattggatgtattatagttatcggtgtggctgttggtgtactaggtacatacacatcttttactgttatgcctatgcctatcgcttacccgcatttttgctccattcgagcagagcaaggttatgctctaactgaacgtacatttgccccagataccgcaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

429

Amino Acids

47.47

Weight (kDa)

8.94

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
AasI GACNNNNNNGTC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 807
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 1 cut(s) 657
AccII CGCG 1 cut(s) 387
AciI CCGC 3 cut(s) 387, 1214, 1281
AclWI GGATC 3 cut(s) 194, 383, 844
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 1 cut(s) 594
AfaI GTAC 3 cut(s) 1164, 1171, 1264
AfiI CCNNNNNNNGG 2 cut(s) 242, 371
AgsI TTSAA 6 cut(s) 67, 208, 460, 779, 822, 1081
AluBI AGCT 8 cut(s) 16, 35, 48, 158, 304, 341, 743, 909
AluI AGCT 8 cut(s) 16, 35, 48, 158, 304, 341, 743, 909
Alw21I GWGCWC 1 cut(s) 974
Alw26I GTCTC 4 cut(s) 319, 490, 529, 664
AlwI GGATC 3 cut(s) 194, 383, 844
AoxI GGCC 1 cut(s) 984
ApoI RAATTY 1 cut(s) 594
Asp700I GAANNNNTTC 1 cut(s) 1085
AsuHPI GGTGA 1 cut(s) 187
BalI TGGCCA 1 cut(s) 986
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 974
BccI CCATC 3 cut(s) 542, 863, 1009
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 4 cut(s) 319, 490, 529, 664
BfaI CTAG 3 cut(s) 311, 740, 1166
BfuAI ACCTGC 1 cut(s) 807
BmiI GGNNCC 1 cut(s) 1030
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 205, 227
BmuI ACTGGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 320, 768
BsaBI GATNNNNATC 1 cut(s) 854
BsaJI CCNNGG 1 cut(s) 651
BsaWI WCCGGW 2 cut(s) 590, 1098
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 371
Bse1I ACTGG 2 cut(s) 133, 166
Bse8I GATNNNNATC 1 cut(s) 854
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 2 cut(s) 279, 1136
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 2 cut(s) 242, 371
BseNI ACTGG 2 cut(s) 133, 166
BseYI CCCAGC 2 cut(s) 182, 371
BsgI GTGCAG 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 986
BsiHKAI GWGCWC 1 cut(s) 974
BsiSI CCGG 2 cut(s) 591, 1099
BslI CCNNNNNNNGG 2 cut(s) 242, 371
BsmAI GTCTC 4 cut(s) 319, 490, 529, 664
BsmBI CGTCTC 2 cut(s) 490, 529
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 986
Bsp1286I GDGCHC 2 cut(s) 99, 974
Bsp143I GATC 5 cut(s) 10, 72, 186, 375, 849
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 3 cut(s) 387, 1214, 1281
BspANI GGCC 1 cut(s) 986
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 1030
BspMI ACCTGC 1 cut(s) 807
BspPI GGATC 3 cut(s) 194, 383, 844
BsrI ACTGG 2 cut(s) 133, 166
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 5 cut(s) 10, 72, 186, 375, 849
BssNAI GTATAC 1 cut(s) 658
BssT1I CCWWGG 1 cut(s) 651
Bst1107I GTATAC 1 cut(s) 658
Bst4CI ACNGT 3 cut(s) 724, 976, 1189
Bst6I CTCTTC 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 477, 911
BstDEI CTNAG 1 cut(s) 608
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 279, 1136
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 5 cut(s) 13, 75, 189, 378, 852
BstMAI GTCTC 4 cut(s) 319, 490, 529, 664
BstMBI GATC 5 cut(s) 10, 72, 186, 375, 849
BstNSI RCATGY 1 cut(s) 934
BstUI CGCG 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 658
BsuRI GGCC 1 cut(s) 986
BtgI CCRYGG 1 cut(s) 651
BtgZI GCGATG 1 cut(s) 783
BtsCI GGATG 2 cut(s) 279, 1136
BtsI GCAGTG 1 cut(s) 956
BtsIMutI CAGTG 3 cut(s) 720, 956, 1010
BveI ACCTGC 1 cut(s) 807
Cac8I GCNNGC 2 cut(s) 477, 911
CseI GACGC 1 cut(s) 1099
Csp6I GTAC 3 cut(s) 1163, 1170, 1263
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 8 cut(s) 70, 251, 292, 652, 931, 943, 1054, 1065
CviQI GTAC 3 cut(s) 1163, 1170, 1263
DdeI CTNAG 1 cut(s) 608
DpnI GATC 5 cut(s) 12, 74, 188, 377, 851
DpnII GATC 5 cut(s) 10, 72, 186, 375, 849
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 984
Eam1104I CTCTTC 1 cut(s) 667
EarI CTCTTC 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 594
EcoRV GATATC 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 651
EcoT22I ATGCAT 2 cut(s) 220, 256
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 651
Esp3I CGTCTC 2 cut(s) 490, 529
FaeI CATG 8 cut(s) 73, 254, 295, 655, 934, 946, 1057, 1068
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 8 cut(s) 69, 250, 291, 651, 930, 942, 1053, 1064
FauI CCCGC 1 cut(s) 1221
FbaI TGATCA 1 cut(s) 72
FblI GTMKAC 1 cut(s) 657
FokI GGATG 2 cut(s) 286, 1143
FriOI GRGCYC 1 cut(s) 99
FspBI CTAG 3 cut(s) 311, 740, 1166
GsaI CCCAGC 2 cut(s) 186, 375
HaeIII GGCC 1 cut(s) 986
HapII CCGG 2 cut(s) 591, 1099
HgaI GACGC 1 cut(s) 1099
Hin1II CATG 8 cut(s) 73, 254, 295, 655, 934, 946, 1057, 1068
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 1 cut(s) 324
HpaII CCGG 2 cut(s) 591, 1099
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 658, 727, 1163
Hpy188I TCNGA 1 cut(s) 1091
Hpy188III TCNNGA 4 cut(s) 52, 236, 299, 328
Hpy8I GTNNAC 3 cut(s) 658, 727, 1163
Hpy99I CGWCG 2 cut(s) 524, 1115
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 724, 976, 1189
HpyCH4IV ACGT 2 cut(s) 483, 1261
HpyCH4V TGCA 6 cut(s) 218, 254, 620, 720, 869, 1121
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 2 cut(s) 483, 1261
Hsp92II CATG 8 cut(s) 73, 254, 295, 655, 934, 946, 1057, 1068
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 5 cut(s) 10, 72, 186, 375, 849
LmnI GCTCC 2 cut(s) 1028, 1229
LweI GCATC 2 cut(s) 205, 227
MaeI CTAG 3 cut(s) 311, 740, 1166
MaeII ACGT 2 cut(s) 483, 1261
MaeIII GTNAC 3 cut(s) 643, 1042, 1073
MalI GATC 5 cut(s) 12, 74, 188, 377, 851
MboI GATC 5 cut(s) 10, 72, 186, 375, 849
MboII GAAGA 5 cut(s) 20, 238, 586, 654, 1093
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 99, 974
MlsI TGGCCA 1 cut(s) 986
MluCI AATT 5 cut(s) 165, 346, 528, 594, 1122
MluNI TGGCCA 1 cut(s) 986
MmeI TCCRAC 1 cut(s) 1006
MnlI CCTC 4 cut(s) 117, 563, 613, 725
Mox20I TGGCCA 1 cut(s) 986
Mph1103I ATGCAT 2 cut(s) 220, 256
MroXI GAANNNNTTC 1 cut(s) 1085
MscI TGGCCA 1 cut(s) 986
MseI TTAA 1 cut(s) 758
MslI CAYNNNNRTG 4 cut(s) 290, 941, 1013, 1069
Msp20I TGGCCA 1 cut(s) 986
MspI CCGG 2 cut(s) 591, 1099
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 254
MvnI CGCG 1 cut(s) 387
NcoI CCATGG 1 cut(s) 651
NdeII GATC 5 cut(s) 10, 72, 186, 375, 849
NlaIII CATG 8 cut(s) 73, 254, 295, 655, 934, 946, 1057, 1068
NlaIV GGNNCC 1 cut(s) 1030
NmuCI GTSAC 1 cut(s) 1042
NsiI ATGCAT 2 cut(s) 220, 256
NspI RCATGY 1 cut(s) 934
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 1 cut(s) 324
PflMI CCANNNNNTGG 1 cut(s) 371
PsiI TTATAA 1 cut(s) 170
PspFI CCCAGC 2 cut(s) 182, 371
PspN4I GGNNCC 1 cut(s) 1030
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 3 cut(s) 1164, 1171, 1264
RsaNI GTAC 3 cut(s) 1163, 1170, 1263
RseI CAYNNNNRTG 4 cut(s) 290, 941, 1013, 1069
SaqAI TTAA 1 cut(s) 758
Sau3AI GATC 5 cut(s) 10, 72, 186, 375, 849
SduI GDGCHC 2 cut(s) 99, 974
SfaNI GCATC 2 cut(s) 205, 227
SmiMI CAYNNNNRTG 4 cut(s) 290, 941, 1013, 1069
SmlI CTYRAG 2 cut(s) 299, 783
SmoI CTYRAG 2 cut(s) 299, 783
Sse9I AATT 5 cut(s) 165, 346, 528, 594, 1122
SsiI CCGC 3 cut(s) 387, 1214, 1281
SspI AATATT 1 cut(s) 441
SspMI CTAG 3 cut(s) 311, 740, 1166
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 3 cut(s) 724, 976, 1189
TaiI ACGT 2 cut(s) 486, 1264
TaqI TCGA 3 cut(s) 122, 1113, 1231
TasI AATT 5 cut(s) 165, 346, 528, 594, 1122
TatI WGTACW 1 cut(s) 1162
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 758
Tru9I TTAA 1 cut(s) 758
TscAI CASTG 3 cut(s) 727, 963, 1017
TseFI GTSAC 1 cut(s) 1042
Tsp45I GTSAC 1 cut(s) 1042
TspDTI ATGAA 7 cut(s) 239, 280, 626, 691, 809, 931, 937
TspGWI ACGGA 2 cut(s) 35, 631
TspRI CASTG 3 cut(s) 727, 963, 1017
Van91I CCANNNNNTGG 1 cut(s) 371
XapI RAATTY 1 cut(s) 594
XceI RCATGY 1 cut(s) 934
XmiI GTMKAC 1 cut(s) 657
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 3 cut(s) 311, 740, 1166
Zsp2I ATGCAT 2 cut(s) 220, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.