Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000003.1

Orthogroup ID

OG0008864

Physical Location & Seq

Genomic Coordinates Forward (+)

78728 .. 79883

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000003.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgaagacatattccgacgtggctttccgggcatttgggcgaaagggcagaatattcgtttccattttcttatacctagaggtttacctagtcccaacaggattgctgataatggaggctgataatttagttaagttattcccacaccttggagtcaagggagtcaatttcggtggacttcacgtggcaggaaaaccatttttcacaatgcttgtgggtctgataatattaccttcgatgtggttaaaggacctgagattgctttcctacatctctttatgtgggatactttcaaccattgttatcatcagcgccattgtttgggttggtattgatgaagtagggttctccgcagcaggagagatattcgattggaaaggacttcctactgctcttagtttgtatgcattttgttatggagctcatccagttttgctcatcacttttttcctatgcactgtaaactacatgctggtggcgattcttggctatttgatgtttggcaagaatgtccaatctcaattgacactgaacatgtctacaaaactcggctcaaaaatagtcatatacaccagtttagctgctccgatggttaagtatgcactgataatctcacctatagcagatgccattgagatgaatttaccgagtaaatggaaaagcaagctggtttggatactcgtaaggacattgttattggttagcacagttgtagtggctttagtttttccctattttgagtcactaacgggacttgttggagcaattctttgcgtaacgatttccatcttgcttccatgtatttgctacttgaagatatttagtctataccagaagtttgatgtggaagttttgattgttggaagcattatggttatggctgtagctgttggtgtgatgggcacatatgcatctgttaaaacgagagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

310

Amino Acids

34.09

Weight (kDa)

9.12

Isoelectric Point (pI)

23.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02190
rosa_chinensis	RchiOBHm_Chr7g0182211 RchiOBHm_Chr7g0197941
rosa_laevigata	RLG00000003901
rosa_multiflora	Rmu_sc0000003.1_g000015 Rmu_sc0001082.1_g000012 Rmu_sc0016104.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258090 Rroxscaffold_3G00271420
rosa_rugosa	Rorug06G0446000 Rorug06G0446000 Rorug06G0446000 Rorug06G0446000 Rorug07G0044700 Rorug07G0044800
rosa_samantha	Rh7BG049200 Rh7BG171100 Rh7CG050500 Rh7CG177700 Rh7DG048400 Rh7DG170300
rosa_wichuraiana	Rw7G004020 Rw7G014680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	149, 321
AccI	GTMKAC	1 cut(s)	539
AciI	CCGC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	640
AcvI	CACGTG	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	149, 321
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	2 cut(s)	294, 814
AjiI	CACGTC	1 cut(s)	19
AluBI	AGCT	4 cut(s)	422, 581, 667, 887
AluI	AGCT	4 cut(s)	422, 581, 667, 887
Alw21I	GWGCWC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	353, 581
ApoI	RAATTY	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	424
BbrPI	CACGTG	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	365, 568
BccI	CCATC	3 cut(s)	583, 794, 892
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciVI	GTATCC	2 cut(s)	279, 669
BcnI	CCSGG	1 cut(s)	29
BfaI	CTAG	2 cut(s)	77, 89
BfmI	CTRYAG	2 cut(s)	618, 882
BfoI	RGCGCY	1 cut(s)	315
BfuI	GTATCC	2 cut(s)	279, 669
BisI	GCNGC	2 cut(s)	354, 582
BlsI	GCNGC	2 cut(s)	355, 583
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	616, 920
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	785
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 321
Bse1I	ACTGG	2 cut(s)	428, 573
Bse8I	GATNNNNATC	1 cut(s)	785
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	1 cut(s)	785
BseLI	CCNNNNNNNGG	2 cut(s)	149, 321
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	2 cut(s)	428, 573
BseSI	GKGCMC	1 cut(s)	905
BseXI	GCAGC	2 cut(s)	365, 568
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	2 cut(s)	77, 765
BslI	CCNNNNNNNGG	2 cut(s)	149, 321
BsmFI	GGGAC	2 cut(s)	77, 765
Bsp1286I	GDGCHC	2 cut(s)	424, 905
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	428, 573
BssECI	CCNNGG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	460, 709
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	2 cut(s)	254, 395
BstF5I	GGATG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNSI	RCATGY	2 cut(s)	472, 538
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	2 cut(s)	618, 882
BstSLI	GKGCMC	1 cut(s)	905
BstV1I	GCAGC	2 cut(s)	365, 568
BstV2I	GAAGAC	1 cut(s)	11
BsuI	GTATCC	2 cut(s)	279, 669
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	3 cut(s)	456, 527, 602
Cac8I	GCNNGC	1 cut(s)	665
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	250
CspCI	CAANNNNNGTGG	4 cut(s)	154, 189, 195, 230
CviAII	CATG	3 cut(s)	469, 535, 798
DdeI	CTNAG	2 cut(s)	254, 395
Ecl136II	GAGCTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	422
Eco72I	CACGTG	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	2 cut(s)	409, 913
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	3 cut(s)	472, 538, 801
FaqI	GGGAC	2 cut(s)	77, 765
FatI	CATG	3 cut(s)	468, 534, 797
FauNDI	CATATG	1 cut(s)	907
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	2 cut(s)	354, 582
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	2 cut(s)	354, 582
FspBI	CTAG	2 cut(s)	77, 89
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	2 cut(s)	354, 582
HaeII	RGCGCY	1 cut(s)	315
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	472, 538, 801
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	4 cut(s)	153, 162, 481, 740
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	606
Hpy166II	GTNNAC	4 cut(s)	85, 176, 463, 540
Hpy188I	TCNGA	3 cut(s)	16, 222, 588
Hpy8I	GTNNAC	4 cut(s)	85, 176, 463, 540
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	460, 709
HpyCH4IV	ACGT	2 cut(s)	18, 183
HpyCH4V	TGCA	4 cut(s)	407, 456, 602, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	254, 395
HpySE526I	ACGT	2 cut(s)	18, 183
Hsp92II	CATG	3 cut(s)	472, 538, 801
HspAI	GCGC	1 cut(s)	312
LmnI	GCTCC	3 cut(s)	419, 589, 761
Lsp1109I	GCAGC	2 cut(s)	365, 568
LweI	GCATC	2 cut(s)	616, 920
MaeI	CTAG	2 cut(s)	77, 89
MaeII	ACGT	2 cut(s)	18, 183
MaeIII	GTNAC	2 cut(s)	741, 775
MboII	GAAGA	2 cut(s)	16, 826
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	2 cut(s)	424, 905
MluCI	AATT	5 cut(s)	124, 166, 521, 640, 765
MlyI	GAGTC	3 cut(s)	162, 171, 749
MmeI	TCCRAC	3 cut(s)	39, 739, 841
MnlI	CCTC	2 cut(s)	73, 109
Mph1103I	ATGCAT	2 cut(s)	409, 913
MseI	TTAA	4 cut(s)	132, 245, 594, 918
MslI	CAYNNNNRTG	2 cut(s)	473, 635
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	29
NdeI	CATATG	1 cut(s)	907
NlaIII	CATG	3 cut(s)	472, 538, 801
NmeAIII	GCCGAG	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	741
NsiI	ATGCAT	2 cut(s)	409, 913
NspI	RCATGY	2 cut(s)	472, 538
PciI	ACATGT	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	481
PflMI	CCANNNNNTGG	2 cut(s)	149, 321
PkrI	GCNGC	2 cut(s)	355, 583
PleI	GAGTC	3 cut(s)	161, 170, 748
PmaCI	CACGTG	1 cut(s)	184
PmlI	CACGTG	1 cut(s)	184
PpsI	GAGTC	3 cut(s)	161, 170, 748
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	250
PscI	ACATGT	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
RseI	CAYNNNNRTG	2 cut(s)	473, 635
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	4 cut(s)	132, 245, 594, 918
SatI	GCNGC	2 cut(s)	354, 582
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	3 cut(s)	162, 171, 749
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	424, 905
SfaNI	GCATC	2 cut(s)	616, 920
SfcI	CTRYAG	2 cut(s)	618, 882
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	2 cut(s)	473, 635
Sse9I	AATT	5 cut(s)	124, 166, 521, 640, 765
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	2 cut(s)	54, 228
SspMI	CTAG	2 cut(s)	77, 89
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	460, 709
TaiI	ACGT	2 cut(s)	21, 186
TaqI	TCGA	2 cut(s)	236, 369
TasI	AATT	5 cut(s)	124, 166, 521, 640, 765
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	4 cut(s)	132, 245, 594, 918
Tru9I	TTAA	4 cut(s)	132, 245, 594, 918
TscAI	CASTG	3 cut(s)	463, 534, 609
TseFI	GTSAC	1 cut(s)	741
TseI	GCWGC	2 cut(s)	353, 581
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	3 cut(s)	17, 351, 653
TspRI	CASTG	3 cut(s)	463, 534, 609
Van91I	CCANNNNNTGG	2 cut(s)	149, 321
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	2 cut(s)	472, 538
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	2 cut(s)	77, 89
Zsp2I	ATGCAT	2 cut(s)	409, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.