Rh7DG048400

amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008864
Physical Location & Seq
Reverse (-)
3736208 .. 3737661
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG048400.1

Sequence Viewer

Length: 702 bp
ATGGCGGATCAGCTAATGGATCTCCCACATACCACAGGAGCAAGTTTTGCAAAGACTTGCTTCAATGGGTTCAATGCCCTATCAGGAATTGGATTGCTTACCACCCCTTATGCACTTTCAAAATCTGGATGGTTAAGTCTTGGTCTTCTTCTAGTTATGGCAATAACAACTTGCTACACTGGAATCTTGCTCACCAAATGCTTGAACACGAACAGATCAATGAAGACATATTCCGACGTGGCTTTCCGGGCATTTGGGCGAAAGGGCAGAATATTCGTTTCCATTTTCTTATACCTAGAGGTTTACCTAGTCCCAACAGGATTGCTGATAATGGAGGCTGATAATTTAGTTAAGTTATTCCCACACCTTGGAGTCAAGGGAGTCAATTTCGGTGGACTTCACGTGGCAGGAAAACCATTTTTCACAATGCTTGTGGGTCTGATAATATTACCTTCGATGTGGTTAAAGGACCTGAGATTGCTTTCCTACATCTCTTTATGTGGGATACTTTCAACCATTGTTATCATCAGCGCCATTGTTTGGGTTGGTATTGATGAAGTAGGGTTCTCCGCAGCAGGAGAGATATTCGATTGGAAAGGACTTCCTACTGCTCTTAGTTTGTATGCATTTTGTTATGGAGCTCATCCAGTCTTTCCAGTCCTATATTCTTCAATGAAACAAAAAAATCACTTCTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

233

Amino Acids

25.54

Weight (kDa)

9.19

Isoelectric Point (pI)

18.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 13 - 231 5.3e-33 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 368, 540
AciI CCGC 2 cut(s) 5, 570
AclWI GGATC 2 cut(s) 15, 27
AcvI CACGTG 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 368, 540
AgsI TTSAA 7 cut(s) 64, 73, 120, 205, 513, 672, 697
AjiI CACGTC 1 cut(s) 238
AluBI AGCT 2 cut(s) 13, 641
AluI AGCT 2 cut(s) 13, 641
Alw21I GWGCWC 1 cut(s) 643
AlwI GGATC 2 cut(s) 15, 27
ApeKI GCWGC 1 cut(s) 572
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 643
BbrPI CACGTG 1 cut(s) 403
BbsI GAAGAC 2 cut(s) 137, 230
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 1 cut(s) 584
BccI CCATC 1 cut(s) 123
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciVI GTATCC 1 cut(s) 498
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 3 cut(s) 152, 296, 308
BfoI RGCGCY 1 cut(s) 534
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 469
BmrFI CCNGG 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 137, 230
BpuMI CCSGG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 540
Bse1I ACTGG 3 cut(s) 184, 647, 656
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 134, 643
BseLI CCNNNNNNNGG 2 cut(s) 368, 540
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 3 cut(s) 184, 647, 656
BseXI GCAGC 1 cut(s) 584
BsiHKAI GWGCWC 1 cut(s) 643
BsiSI CCGG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 368, 540
BsmFI GGGAC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 3 cut(s) 7, 19, 215
BspACI CCGC 2 cut(s) 5, 570
BspCNI CTCAG 1 cut(s) 465
BspPI GGATC 2 cut(s) 15, 27
BsrI ACTGG 3 cut(s) 184, 647, 656
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 3 cut(s) 7, 19, 215
BssT1I CCWWGG 1 cut(s) 367
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 403
BstDEI CTNAG 2 cut(s) 473, 614
BstF5I GGATG 2 cut(s) 134, 643
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 3 cut(s) 10, 22, 218
BstMBI GATC 3 cut(s) 7, 19, 215
BstMWI GCNNNNNNNGC 2 cut(s) 47, 248
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 2 cut(s) 137, 230
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuI GTATCC 1 cut(s) 498
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 2 cut(s) 134, 643
BtsIMutI CAGTG 1 cut(s) 177
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 469
CspCI CAANNNNNGTGG 4 cut(s) 373, 408, 414, 449
CviJI RGCY 4 cut(s) 13, 242, 338, 641
CviKI_1 RGCY 4 cut(s) 13, 242, 338, 641
DdeI CTNAG 2 cut(s) 473, 614
DpnI GATC 3 cut(s) 9, 21, 217
DpnII GATC 3 cut(s) 7, 19, 215
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 469
Eco53kI GAGCTC 1 cut(s) 641
Eco72I CACGTG 1 cut(s) 403
EcoICRI GAGCTC 1 cut(s) 641
EcoO109I RGGNCCY 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 367
FaiI YATR 9 cut(s) 30, 111, 158, 229, 292, 499, 624, 636, 664
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 2 cut(s) 141, 630
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 3 cut(s) 152, 296, 308
GlaI GCGC 1 cut(s) 532
GluI GCNGC 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 534
HapII CCGG 1 cut(s) 247
HhaI GCGC 1 cut(s) 533
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 3 cut(s) 183, 372, 381
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 304, 395
Hpy188I TCNGA 2 cut(s) 235, 441
Hpy188III TCNNGA 2 cut(s) 84, 126
Hpy8I GTNNAC 2 cut(s) 304, 395
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 462
HpyCH4IV ACGT 2 cut(s) 237, 402
HpyCH4V TGCA 3 cut(s) 50, 113, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 248
HpyF3I CTNAG 2 cut(s) 473, 614
HpySE526I ACGT 2 cut(s) 237, 402
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 3 cut(s) 7, 19, 215
LmnI GCTCC 2 cut(s) 38, 638
Lsp1109I GCAGC 1 cut(s) 584
MaeI CTAG 3 cut(s) 152, 296, 308
MaeII ACGT 2 cut(s) 237, 402
MalI GATC 3 cut(s) 9, 21, 217
MboI GATC 3 cut(s) 7, 19, 215
MboII GAAGA 5 cut(s) 137, 140, 235, 660, 685
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 3 cut(s) 87, 343, 385
MlyI GAGTC 2 cut(s) 381, 390
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 2 cut(s) 292, 328
Mph1103I ATGCAT 1 cut(s) 628
MseI TTAA 3 cut(s) 134, 351, 464
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 47, 248
NciI CCSGG 1 cut(s) 248
NdeII GATC 3 cut(s) 7, 19, 215
NsiI ATGCAT 1 cut(s) 628
PfeI GAWTC 1 cut(s) 183
PflMI CCANNNNNTGG 2 cut(s) 368, 540
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 2 cut(s) 380, 389
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
PpsI GAGTC 2 cut(s) 380, 389
Ppu21I YACGTR 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 643
Psp5II RGGWCCY 1 cut(s) 469
PspCI CACGTG 1 cut(s) 403
PspPI GGNCC 1 cut(s) 469
PspPPI RGGWCCY 1 cut(s) 469
PsuI RGATCY 1 cut(s) 19
SacI GAGCTC 1 cut(s) 643
SaqAI TTAA 3 cut(s) 134, 351, 464
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 3 cut(s) 7, 19, 215
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 2 cut(s) 381, 390
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 643
SinI GGWCC 1 cut(s) 469
Sse9I AATT 3 cut(s) 87, 343, 385
SsiI CCGC 2 cut(s) 5, 570
SspI AATATT 2 cut(s) 273, 447
SspMI CTAG 3 cut(s) 152, 296, 308
SstI GAGCTC 1 cut(s) 643
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 367
TaiI ACGT 2 cut(s) 240, 405
TaqI TCGA 2 cut(s) 455, 588
TasI AATT 3 cut(s) 87, 343, 385
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 3 cut(s) 134, 351, 464
Tru9I TTAA 3 cut(s) 134, 351, 464
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 572
TspDTI ATGAA 3 cut(s) 236, 570, 689
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 2 cut(s) 368, 540
VpaK11BI GGWCC 1 cut(s) 469
XspI CTAG 3 cut(s) 152, 296, 308
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.