Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008134

Physical Location & Seq

Genomic Coordinates Reverse (-)

2306446 .. 2308731

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGGTAACCAATAGGTACATCACCATAAAGACTCATGTAGATGGAGAGCCCAAAGAGTCAGATTTCGAGCTCAAAACCTCAGCCCTTTCGTTGTCACTTGATCCCGGTTCTAATGACATCATCGTGAAGAATCTGTTTGTGTCAATCGACCCTTACCAGCTAAACCGCATGAAAAGTCAGAGTTCATCCCATAAAGCTATTGGTTTCGCTTCTGCCATCAGTCCCGGTGAAGATATTGATGCTTACGGTGTTGCAAAAGTTGTGGCTTCTGGGAACCCTGAGTTTGAGAAGGATGACTTGGTTGTGGGGATCATCACGTGGGGAGAGTACAGTTTGCTAGAAGGAGGAAAATACATGTTGAGGAAATTTGATCCTATGGGATTCCCACTGTCTTACCAAGTTGGAATTCTAGGTTTCAGTGGACTTACAGCATATGGTGGATTTTTCGAAGTATGCAAACCAAAGAAGGGGGAGAAAGTTTTCGTCTCTGCAGCTTCTGGATCGGTTGGAAATTTGGTCGGACAATATGCAAAGCTTTTCGGTTGCTATGTTGTGGGATGTGCAGGAAGCAAAGAAAAGGTCGCATTGCTTAAGGAAAAGCTTGGATTTGATGATGCATTCAACTACAAGGAAGAGCCTGATTTGAAGTCAGCTCTCGGAAGGTACTTCCCTGATGGGATTGACATCTACTTTGACAATGTGGGGGCTGAAATGCTAGAGGCTGCGGTTGTTAACATGAACAGCTTTGGTAGGGTTGCTGTCTGCGGCGTGATCTCCGAGTACACTGATGCTTCAAAGCGAGCTGCACCGAATATGCTAGATGTCGTGTACAAGAGAATCAAACTCCAAGGGTTTCTAGCAGCCGATCTTATGAGTGTGTTTTCAGATTTCCTTTCCACCACAACTGATCATCTTCGTACAGGGAAATTGCATGCACTTGAAGACATCTCATATGGTGTGGAGAGTTTTCCTTCCGCTTTCATTGCACTTTATCGTGGTCACAACACTGGAAAGAAAATGGTTAAAGTGGCAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

348

Amino Acids

37.76

Weight (kDa)

5.42

Isoelectric Point (pI)

18.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	6 - 118	1.8e-18	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	170 - 292	9.2e-22	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	202 - 339	2e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03870
malus_domestica	MD15G1173200.v1.1 MD15G1173400.v1.1
prunus_persica	Prupe.7G242400_v2.0.a1 Prupe.7G242400_v2.0.a1
pyrus_communis	pycom15g15510 pycom15g15530 pycom15g15540
rosa_chinensis	RchiOBHm_Chr2g0088551 RchiOBHm_Chr2g0088561
rosa_laevigata	RLG00000015962 RLG00000015965
rosa_multiflora	Rmu_co8462133.1_g000001 Rmu_sc0004733.1_g000007 Rmu_sc0041148.1_g000001 Rmu_sc0041185.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152610
rosa_rugosa	Rorug01G0485000 Rorug01G0485100
rosa_samantha	Rh2AG039800 Rh2CG039900 Rh2DG039200
rosa_wichuraiana	Rw2G003110 Rw2G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	169, 728, 768, 978
AclWI	GGATC	4 cut(s)	98, 320, 368, 511
AcsI	RAATTY	3 cut(s)	368, 408, 514
AcvI	CACGTG	1 cut(s)	321
AfaI	GTAC	6 cut(s)	20, 332, 668, 785, 833, 922
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflII	CTTAAG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	625, 649, 798, 944
AjuI	GAANNNNNNNTTGG	4 cut(s)	284, 316, 393, 425
AluBI	AGCT	9 cut(s)	73, 163, 200, 497, 538, 604, 656, 747, 806
AluI	AGCT	9 cut(s)	73, 163, 200, 497, 538, 604, 656, 747, 806
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	4 cut(s)	98, 320, 368, 511
AlwNI	CAGNNNCTG	1 cut(s)	500
ApeKI	GCWGC	4 cut(s)	494, 725, 806, 863
ApoI	RAATTY	3 cut(s)	368, 408, 514
ArsI	GACNNNNNNTTYG	4 cut(s)	567, 599, 677, 709
Asp700I	GAANNNNTTC	1 cut(s)	482
AsuC2I	CCSGG	2 cut(s)	108, 228
AsuHPI	GGTGA	2 cut(s)	16, 242
AsuII	TTCGAA	1 cut(s)	450
BanII	GRGCYC	2 cut(s)	54, 75
BbrPI	CACGTG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	506, 712, 793, 875
BccI	CCATC	3 cut(s)	38, 227, 671
BclI	TGATCA	1 cut(s)	910
BcnI	CCSGG	2 cut(s)	108, 228
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	5 cut(s)	341, 413, 719, 821, 860
BfmI	CTRYAG	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	5 cut(s)	495, 726, 769, 807, 864
BlsI	GCNGC	5 cut(s)	496, 727, 770, 808, 865
Bme1390I	CCNGG	2 cut(s)	108, 228
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	2 cut(s)	108, 228
BmsI	GCATC	3 cut(s)	232, 607, 781
BpiI	GAAGAC	1 cut(s)	951
Bpu10I	CCTNAGC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	450
BpuMI	CCSGG	2 cut(s)	108, 228
BsaAI	YACGTR	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	686
BsaJI	CCNNGG	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	1015
Bse3DI	GCAATG	2 cut(s)	587, 984
Bse8I	GATNNNNATC	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	850
BseGI	GGATG	3 cut(s)	188, 301, 566
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	2 cut(s)	587, 984
BseMII	CTCAG	2 cut(s)	96, 273
BseNI	ACTGG	1 cut(s)	1015
BseXI	GCAGC	4 cut(s)	506, 712, 793, 875
BsgI	GTGCAG	2 cut(s)	585, 792
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	108, 228
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	493
BsmBI	CGTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	54, 75
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	7 cut(s)	103, 312, 373, 503, 774, 868, 910
BspACI	CCGC	4 cut(s)	169, 728, 768, 978
BspCNI	CTCAG	2 cut(s)	95, 274
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	4 cut(s)	98, 320, 368, 511
BspQI	GCTCTTC	1 cut(s)	630
BspT104I	TTCGAA	1 cut(s)	450
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	2 cut(s)	587, 984
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	1015
BssECI	CCNNGG	1 cut(s)	850
BssMI	GATC	7 cut(s)	103, 312, 373, 503, 774, 868, 910
BssT1I	CCWWGG	1 cut(s)	850
Bst4CI	ACNGT	3 cut(s)	251, 335, 393
Bst6I	CTCTTC	1 cut(s)	630
BstAFI	CTTAAG	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	831
BstBAI	YACGTR	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	804, 936
BstDEI	CTNAG	2 cut(s)	82, 282
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	3 cut(s)	188, 301, 566
BstKTI	GATC	7 cut(s)	106, 315, 376, 506, 777, 871, 913
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	7 cut(s)	103, 312, 373, 503, 774, 868, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	986
BstNSI	RCATGY	2 cut(s)	361, 938
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	106, 226
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	4 cut(s)	506, 712, 793, 875
BstV2I	GAAGAC	1 cut(s)	951
BtsCI	GGATG	3 cut(s)	188, 301, 566
BtsIMutI	CAGTG	4 cut(s)	389, 427, 786, 1008
Cac8I	GCNNGC	2 cut(s)	804, 936
CaiI	CAGNNNCTG	1 cut(s)	500
Csp6I	GTAC	6 cut(s)	19, 331, 667, 784, 832, 921
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	5 cut(s)	38, 172, 358, 739, 935
CviQI	GTAC	6 cut(s)	19, 331, 667, 784, 832, 921
DdeI	CTNAG	2 cut(s)	82, 282
DpnI	GATC	7 cut(s)	105, 314, 375, 505, 776, 870, 912
DpnII	GATC	7 cut(s)	103, 312, 373, 503, 774, 868, 910
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	850
Eco24I	GRGCYC	2 cut(s)	54, 75
Eco53kI	GAGCTC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	321
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	850
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	2 cut(s)	54, 75
ErhI	CCWWGG	1 cut(s)	850
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	5 cut(s)	41, 175, 361, 742, 938
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	5 cut(s)	37, 171, 357, 738, 934
FauNDI	CATATG	2 cut(s)	436, 955
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	5 cut(s)	495, 726, 769, 807, 864
FokI	GGATG	3 cut(s)	175, 308, 573
FriOI	GRGCYC	2 cut(s)	54, 75
Fsp4HI	GCNGC	5 cut(s)	495, 726, 769, 807, 864
FspBI	CTAG	5 cut(s)	341, 413, 719, 821, 860
GluI	GCNGC	5 cut(s)	495, 726, 769, 807, 864
HapII	CCGG	2 cut(s)	108, 228
Hin1II	CATG	5 cut(s)	41, 175, 361, 742, 938
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	2 cut(s)	536, 602
HinfI	GANTC	5 cut(s)	34, 59, 133, 384, 840
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	2 cut(s)	108, 228
HphI	GGTGA	2 cut(s)	16, 242
Hpy166II	GTNNAC	4 cut(s)	425, 736, 786, 832
Hpy188I	TCNGA	6 cut(s)	64, 183, 524, 662, 781, 889
Hpy188III	TCNNGA	2 cut(s)	127, 501
Hpy8I	GTNNAC	4 cut(s)	425, 736, 786, 832
HpyAV	CCTTC	5 cut(s)	286, 338, 463, 657, 984
HpyCH4III	ACNGT	3 cut(s)	251, 335, 393
HpyCH4IV	ACGT	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	986
HpyF3I	CTNAG	2 cut(s)	82, 282
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	5 cut(s)	41, 175, 361, 742, 938
Ksp22I	TGATCA	1 cut(s)	910
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	7 cut(s)	103, 312, 373, 503, 774, 868, 910
LguI	GCTCTTC	1 cut(s)	630
Lsp1109I	GCAGC	4 cut(s)	506, 712, 793, 875
LweI	GCATC	3 cut(s)	232, 607, 781
MaeI	CTAG	5 cut(s)	341, 413, 719, 821, 860
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	7, 96, 1001
MalI	GATC	7 cut(s)	105, 314, 375, 505, 776, 870, 912
MboI	GATC	7 cut(s)	103, 312, 373, 503, 774, 868, 910
MboII	GAAGA	5 cut(s)	142, 245, 647, 908, 956
MhlI	GDGCHC	2 cut(s)	54, 75
MluCI	AATT	4 cut(s)	368, 408, 514, 929
MlyI	GAGTC	2 cut(s)	28, 68
MmeI	TCCRAC	3 cut(s)	385, 490, 502
MnlI	CCTC	4 cut(s)	91, 341, 357, 715
Mph1103I	ATGCAT	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	3 cut(s)	594, 735, 1026
MslI	CAYNNNNRTG	2 cut(s)	42, 125
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	2 cut(s)	108, 228
MspR9I	CCNGG	2 cut(s)	108, 228
Mva1269I	GAATGC	1 cut(s)	620
MwoI	GCNNNNNNNGC	1 cut(s)	986
NciI	CCSGG	2 cut(s)	108, 228
NdeI	CATATG	2 cut(s)	436, 955
NdeII	GATC	7 cut(s)	103, 312, 373, 503, 774, 868, 910
NlaIII	CATG	5 cut(s)	41, 175, 361, 742, 938
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	2 cut(s)	96, 1001
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	2 cut(s)	361, 938
NspV	TTCGAA	1 cut(s)	450
PaeI	GCATGC	1 cut(s)	938
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	630
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	133, 384, 840
PkrI	GCNGC	5 cut(s)	496, 727, 770, 808, 865
PleI	GAGTC	2 cut(s)	28, 67
PmaCI	CACGTG	1 cut(s)	321
PmlI	CACGTG	1 cut(s)	321
PpsI	GAGTC	2 cut(s)	28, 67
Ppu21I	YACGTR	1 cut(s)	321
PscI	ACATGT	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	75
PspCI	CACGTG	1 cut(s)	321
PspEI	GGTNACC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	500
RsaI	GTAC	6 cut(s)	20, 332, 668, 785, 833, 922
RsaNI	GTAC	6 cut(s)	19, 331, 667, 784, 832, 921
RseI	CAYNNNNRTG	2 cut(s)	42, 125
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	594, 735, 1026
SatI	GCNGC	5 cut(s)	495, 726, 769, 807, 864
Sau3AI	GATC	7 cut(s)	103, 312, 373, 503, 774, 868, 910
SchI	GAGTC	2 cut(s)	28, 68
ScrFI	CCNGG	2 cut(s)	108, 228
SduI	GDGCHC	2 cut(s)	54, 75
SfaNI	GCATC	3 cut(s)	232, 607, 781
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	42, 125
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SphI	GCATGC	1 cut(s)	938
Sse9I	AATT	4 cut(s)	368, 408, 514, 929
SsiI	CCGC	4 cut(s)	169, 728, 768, 978
SspMI	CTAG	5 cut(s)	341, 413, 719, 821, 860
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	106, 226
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	3 cut(s)	251, 335, 393
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	3 cut(s)	69, 150, 450
TasI	AATT	4 cut(s)	368, 408, 514, 929
TatI	WGTACW	3 cut(s)	330, 783, 831
TauI	GCSGC	1 cut(s)	771
TfiI	GAWTC	3 cut(s)	133, 384, 840
Tru1I	TTAA	3 cut(s)	594, 735, 1026
Tru9I	TTAA	3 cut(s)	594, 735, 1026
TscAI	CASTG	4 cut(s)	396, 427, 793, 1015
TseFI	GTSAC	2 cut(s)	96, 1001
TseI	GCWGC	4 cut(s)	494, 725, 806, 863
Tsp45I	GTSAC	2 cut(s)	96, 1001
TspDTI	ATGAA	4 cut(s)	177, 188, 755, 973
TspRI	CASTG	4 cut(s)	396, 427, 793, 1015
Vha464I	CTTAAG	1 cut(s)	593
XapI	RAATTY	3 cut(s)	368, 408, 514
XceI	RCATGY	2 cut(s)	361, 938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	5 cut(s)	341, 413, 719, 821, 860
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.