Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008134

Physical Location & Seq

Genomic Coordinates Forward (+)

10798973 .. 10800510

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGGTAACCAACAGGTACATTACTATAAAATCCCCCCTCGACGACGGAGAACCGAAAGAGTCAGACTTTGAGGTCAAAACTTCACCCCTTGCTCTATCAGTTTCCGCTGGTTCCACTGATGTCATCGTGAAAAATCTCTATGTGTCGATCGATCCGTACCAGCTCAACCGCATGAAAAGGTTCAGCTCCTCCCACAAAACCATAAATTATGCAGCTGCCGTCGCCCCAGGAGATGAAATTGATGCTTATGGTGTGGCAAAAGTTGTGGCTTCTGGGAATCCAGAGTTTGAGAAGGATGACTTGGTTGTGGGGTTCATCCGTTGGGGAGAGTACACTGTTCTAAAAGAACGGACCATGTTTAGGAAATTTGACCCTTTGGGATTTCCACTTTCTTATCAAGTTGGAATTCTAGGTTTTAGTGGACTTACAGCATATGGGGGATTTTTTGAAGTGTGCAAGCCTAAAAAGGGGGAGAGAGTTTTCGTATCTGCGGCTTCTGGATCGGTTGGAAATTTGGTCGGACAGTATGCAAAACTCTTCGGTTGCTATGTTGTTGGCAGTGCCGGAAGCAAAGAAAAGGTGGCATTGCTCAAGGCAAAGCTCGGATTCGATGATGCCTTCAACTACAAGGAAGAGCCTGATTTAAAGTCAACTCTCAAAAAGTACTTCCCGGATGGGATTGATATATATTTTGACAATGTGGGAGCTGTGATGCTGGAAGCAGCAGTTGAGAACATGAACACCTTCGGAAGGGTTGCTGTCTGCGGCGTGATTTCTGAGTACACAGATGCAGGAAAACGGGCTGCGCCAAATATGCTAGACGTTGTTTACAAGAGAATTAAGATCCAAGGGTTTTTAGCAGCTGATCTCATGAATGTGTACTCTGATTTCATCTCCACCACCGTGGATCATCTTCGCACGGGCAATTTGCACGTGGTTGAAGACATCTCGTGTGGTTTGGAGAGTTTTCCATCTGCTTTCATTGGACTTTTTCGCGGTCATAACACCGGAAAGAAAATGGTTAAGGTTGTAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

348

Amino Acids

37.99

Weight (kDa)

5.94

Isoelectric Point (pI)

19.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03870
malus_domestica	MD15G1173200.v1.1 MD15G1173400.v1.1
prunus_persica	Prupe.7G242400_v2.0.a1 Prupe.7G242400_v2.0.a1
pyrus_communis	pycom15g15510 pycom15g15530 pycom15g15540
rosa_chinensis	RchiOBHm_Chr2g0088551 RchiOBHm_Chr2g0088561
rosa_laevigata	RLG00000015962 RLG00000015965
rosa_multiflora	Rmu_co8462133.1_g000001 Rmu_sc0004733.1_g000007 Rmu_sc0041148.1_g000001 Rmu_sc0041185.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152610
rosa_rugosa	Rorug01G0485000 Rorug01G0485100
rosa_samantha	Rh2AG039800 Rh2CG039900 Rh2DG039200
rosa_wichuraiana	Rw2G003110 Rw2G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	999
AciI	CCGC	5 cut(s)	108, 172, 494, 768, 999
AclWI	GGATC	4 cut(s)	149, 511, 841, 918
AcsI	RAATTY	3 cut(s)	368, 408, 514
AcvI	CACGTG	1 cut(s)	937
AfaI	GTAC	6 cut(s)	20, 161, 335, 668, 785, 884
AfiI	CCNNNNNNNGG	3 cut(s)	363, 470, 753
AgsI	TTSAA	3 cut(s)	452, 625, 944
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AleI	CACNNNNGTG	1 cut(s)	905
AluBI	AGCT	6 cut(s)	166, 189, 218, 604, 710, 866
AluI	AGCT	6 cut(s)	166, 189, 218, 604, 710, 866
AlwI	GGATC	4 cut(s)	149, 511, 841, 918
ApeKI	GCWGC	5 cut(s)	215, 218, 725, 806, 863
ApoI	RAATTY	3 cut(s)	368, 408, 514
Asp700I	GAANNNNTTC	2 cut(s)	182, 746
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	952
BbrPI	CACGTG	1 cut(s)	937
BbsI	GAAGAC	1 cut(s)	951
BbvI	GCAGC	5 cut(s)	205, 227, 737, 793, 875
BccI	CCATC	2 cut(s)	671, 982
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	674
BfaI	CTAG	2 cut(s)	413, 821
BisI	GCNGC	7 cut(s)	216, 219, 495, 726, 769, 807, 864
BlsI	GCNGC	7 cut(s)	217, 220, 496, 727, 770, 808, 865
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	2 cut(s)	231, 674
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	231, 674
BmsI	GCATC	4 cut(s)	235, 607, 705, 781
BpiI	GAAGAC	1 cut(s)	951
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	674
Bsa29I	ATCGAT	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	937
BsaJI	CCNNGG	3 cut(s)	229, 850, 906
BsaWI	WCCGGW	1 cut(s)	1010
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 470, 753
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	229, 850, 906
BseGI	GGATG	3 cut(s)	304, 318, 682
BseLI	CCNNNNNNNGG	3 cut(s)	363, 470, 753
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	1 cut(s)	771
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	5 cut(s)	205, 227, 737, 793, 875
Bsh1236I	CGCG	1 cut(s)	999
Bsh1285I	CGRYCG	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	567, 674, 1011
BslI	CCNNNNNNNGG	3 cut(s)	363, 470, 753
Bsp143I	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
BspACI	CCGC	5 cut(s)	108, 172, 494, 768, 999
BspCNI	CTCAG	1 cut(s)	772
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	999
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	4 cut(s)	149, 511, 841, 918
BspQI	GCTCTTC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	587
BssECI	CCNNGG	3 cut(s)	229, 850, 906
BssMI	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
BssSI	CACGAG	1 cut(s)	952
BssT1I	CCWWGG	1 cut(s)	850
Bst2BI	CACGAG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	340, 528, 907
Bst6I	CTCTTC	2 cut(s)	545, 630
BstBAI	YACGTR	1 cut(s)	937
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	780
BstDSI	CCRYGG	1 cut(s)	906
BstEII	GGTNACC	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	751
BstF5I	GGATG	3 cut(s)	304, 318, 682
BstFNI	CGCG	1 cut(s)	999
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	6 cut(s)	153, 157, 506, 849, 871, 913
BstMBI	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 817
BstNI	CCWGG	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	229, 672
BstUI	CGCG	1 cut(s)	999
BstV1I	GCAGC	5 cut(s)	205, 227, 737, 793, 875
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	1 cut(s)	846
BstXI	CCANNNNNNTGG	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	846
Bsu15I	ATCGAT	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	3 cut(s)	304, 318, 682
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	3 cut(s)	117, 336, 568
Cac8I	GCNNGC	1 cut(s)	461
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	354
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	6 cut(s)	19, 160, 334, 667, 784, 883
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	4 cut(s)	175, 358, 739, 874
CviQI	GTAC	6 cut(s)	19, 160, 334, 667, 784, 883
DdeI	CTNAG	1 cut(s)	780
DpnI	GATC	6 cut(s)	152, 156, 505, 848, 870, 912
DpnII	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
DraI	TTTAAA	1 cut(s)	648
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	2 cut(s)	545, 630
EarI	CTCTTC	2 cut(s)	545, 630
Eco130I	CCWWGG	1 cut(s)	850
Eco47I	GGWCC	1 cut(s)	354
Eco72I	CACGTG	1 cut(s)	937
Eco91I	GGTNACC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	751
EcoO65I	GGTNACC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	850
ErhI	CCWWGG	1 cut(s)	850
FaeI	CATG	4 cut(s)	178, 361, 742, 877
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	4 cut(s)	174, 357, 738, 873
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	7 cut(s)	216, 219, 495, 726, 769, 807, 864
FokI	GGATG	3 cut(s)	305, 311, 689
Fsp4HI	GCNGC	7 cut(s)	216, 219, 495, 726, 769, 807, 864
FspBI	CTAG	2 cut(s)	413, 821
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	7 cut(s)	216, 219, 495, 726, 769, 807, 864
HapII	CCGG	3 cut(s)	567, 674, 1011
HhaI	GCGC	1 cut(s)	811
Hin1II	CATG	4 cut(s)	178, 361, 742, 877
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	3 cut(s)	62, 280, 609
HpaII	CCGG	3 cut(s)	567, 674, 1011
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	6 cut(s)	336, 425, 654, 786, 832, 883
Hpy188I	TCNGA	6 cut(s)	67, 524, 608, 752, 781, 889
Hpy188III	TCNNGA	4 cut(s)	130, 284, 501, 874
Hpy8I	GTNNAC	6 cut(s)	336, 425, 654, 786, 832, 883
Hpy99I	CGWCG	3 cut(s)	47, 50, 227
HpyAV	CCTTC	4 cut(s)	289, 631, 747, 757
HpyCH4III	ACNGT	3 cut(s)	340, 528, 907
HpyCH4IV	ACGT	2 cut(s)	825, 936
HpyCH4V	TGCA	5 cut(s)	215, 459, 533, 794, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 817
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	2 cut(s)	825, 936
Hsp92II	CATG	4 cut(s)	178, 361, 742, 877
HspAI	GCGC	1 cut(s)	809
Kzo9I	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	2 cut(s)	194, 707
Lsp1109I	GCAGC	5 cut(s)	205, 227, 737, 793, 875
LweI	GCATC	4 cut(s)	235, 607, 705, 781
MaeI	CTAG	2 cut(s)	413, 821
MaeII	ACGT	2 cut(s)	825, 936
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	6 cut(s)	152, 156, 505, 848, 870, 912
MboI	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
MboII	GAAGA	4 cut(s)	532, 647, 908, 956
MflI	RGATCY	1 cut(s)	846
MluCI	AATT	7 cut(s)	208, 240, 368, 408, 514, 840, 928
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	3 cut(s)	385, 490, 502
MnlI	CCTC	3 cut(s)	50, 67, 202
MroXI	GAANNNNTTC	2 cut(s)	182, 746
MseI	TTAA	3 cut(s)	647, 843, 1026
MslI	CAYNNNNRTG	2 cut(s)	878, 905
MspA1I	CMGCKG	3 cut(s)	110, 218, 866
MspI	CCGG	3 cut(s)	567, 674, 1011
MspR9I	CCNGG	2 cut(s)	231, 674
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	999
MwoI	GCNNNNNNNGC	2 cut(s)	224, 817
NciI	CCSGG	1 cut(s)	674
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
NlaIII	CATG	4 cut(s)	178, 361, 742, 877
NlaIV	GGNNCC	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	905
PagI	TCATGA	1 cut(s)	873
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PdmI	GAANNNNTTC	2 cut(s)	182, 746
PfeI	GAWTC	2 cut(s)	280, 609
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	7 cut(s)	217, 220, 496, 727, 770, 808, 865
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	937
PmlI	CACGTG	1 cut(s)	937
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	937
Psp6I	CCWGG	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	937
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	846
PvuI	CGATCG	1 cut(s)	153
PvuII	CAGCTG	2 cut(s)	218, 866
RsaI	GTAC	6 cut(s)	20, 161, 335, 668, 785, 884
RsaNI	GTAC	6 cut(s)	19, 160, 334, 667, 784, 883
RseI	CAYNNNNRTG	2 cut(s)	878, 905
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	647, 843, 1026
SatI	GCNGC	7 cut(s)	216, 219, 495, 726, 769, 807, 864
Sau3AI	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
Sau96I	GGNCC	1 cut(s)	354
ScaI	AGTACT	1 cut(s)	668
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	231, 674
SfaNI	GCATC	4 cut(s)	235, 607, 705, 781
SinI	GGWCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	878, 905
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	7 cut(s)	208, 240, 368, 408, 514, 840, 928
SsiI	CCGC	5 cut(s)	108, 172, 494, 768, 999
SspMI	CTAG	2 cut(s)	413, 821
StyD4I	CCNGG	2 cut(s)	229, 672
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	3 cut(s)	340, 528, 907
TaiI	ACGT	2 cut(s)	828, 939
TaqI	TCGA	4 cut(s)	42, 149, 153, 612
TasI	AATT	7 cut(s)	208, 240, 368, 408, 514, 840, 928
TatI	WGTACW	4 cut(s)	333, 666, 783, 882
TauI	GCSGC	2 cut(s)	497, 771
TfiI	GAWTC	2 cut(s)	280, 609
Tru1I	TTAA	3 cut(s)	647, 843, 1026
Tru9I	TTAA	3 cut(s)	647, 843, 1026
TscAI	CASTG	3 cut(s)	124, 343, 568
TseI	GCWGC	5 cut(s)	215, 218, 725, 806, 863
TspDTI	ATGAA	7 cut(s)	191, 252, 307, 755, 883, 890, 973
TspGWI	ACGGA	4 cut(s)	63, 147, 311, 367
TspRI	CASTG	3 cut(s)	124, 343, 568
VpaK11BI	GGWCC	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	751
XapI	RAATTY	3 cut(s)	368, 408, 514
XmnI	GAANNNNTTC	2 cut(s)	182, 746
XspI	CTAG	2 cut(s)	413, 821
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.