Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008134

Physical Location & Seq

Genomic Coordinates Forward (+)

13550291 .. 13551886

Gene Structure 1596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1173400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAGTAACCAACAGGTGCATTACTAAAAAATCCCCCCTCGACGACGGAGAACCGAAAGAGTCAGACTTTGAGGTCAAAACTTCACCCCTTGCTCTATCAGTTTCCGCTGGTTCCACTGATGTCATCGTGAAAAATCTCTATGTGTCGATCGATCCGTACCTGCACAACCGCATGAAAAGGTTTAGCTCCTCCCACAAAACCATAAATTATTTAGCTGCCGTCGCCCCAGGAGATGAAATTGATGCTTATGGTTTGGCAAAAGTTGTGGCTTCTGGGAATCCAGAGTTTGAGAAGGATGACTTGGTTGTGGGGTTCATCAGTTGGGGAGAGTACACTGTTCTAAAAGAAGGGACCATGTTTAGGAAATTTGACCCTTTGGGATTTCCACTTTCTTATCAAGTTGGAATTCTAGGTTTTAGTGGACTTACAGCATATGGGGGATTTTTTGAAGTGTGCAAGCCTAAAAAGGGGGAGAGAGTTTTCGTATCTGCAGCTTCTGGATCGGTTGGAAATTTGGTCGGACAGTACGCAAAACTCTTTGGTTGCTATGTTGTTGGCTGTGCCGGAAGCAAAGAAAAGGTCACATTGCTCAAAGGAAAGCTCAGATTCGACGATGCCTTCAACTGCAAGGAAGAGCCTGATTTAAAGTCAACTCTCAAAAAGTACTTCCCGGATGGGATTGATATATATTTTGACAATGTGGGAGCTGAGATGCTGGAAGCAGCAGTTGAGAACATGAACACCTTCGGTAGGGTTGCTGTCTGCGGCATGATTTCTGAGTACACAGATGCCGGAAAGCGAGCTGCGCCAAATATGCTAGACGTTGTTTGCAAGAGAATTAAGATCCAAGGGTTTTTAGCGGCTGATCACATGAATGTGTACTCTGATTTTATCTCCACCACCGTGGATCATCTTCGCACGGGCAATTTGCAAGCGGTTGAAGACATCTCGTGTGGTTTGGAGAGTTTTCCATCTGCTTTCATTGGACTTTTTCGCGGTCATAACACCGGAAAGAAAATGGTTAAGCTTGCAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

348

Amino Acids

37.88

Weight (kDa)

5.86

Isoelectric Point (pI)

19.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	16 - 120	4.1e-17	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	170 - 292	8.1e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03870
malus_domestica	MD15G1173200.v1.1 MD15G1173400.v1.1
prunus_persica	Prupe.7G242400_v2.0.a1 Prupe.7G242400_v2.0.a1
pyrus_communis	pycom15g15510 pycom15g15530 pycom15g15540
rosa_chinensis	RchiOBHm_Chr2g0088551 RchiOBHm_Chr2g0088561
rosa_laevigata	RLG00000015962 RLG00000015965
rosa_multiflora	Rmu_co8462133.1_g000001 Rmu_sc0004733.1_g000007 Rmu_sc0041148.1_g000001 Rmu_sc0041185.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152610
rosa_rugosa	Rorug01G0485000 Rorug01G0485100
rosa_samantha	Rh2AG039800 Rh2CG039900 Rh2DG039200
rosa_wichuraiana	Rw2G003110 Rw2G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	171
AccII	CGCG	1 cut(s)	999
AciI	CCGC	6 cut(s)	108, 172, 768, 863, 938, 999
AclWI	GGATC	4 cut(s)	149, 511, 841, 918
AcsI	RAATTY	3 cut(s)	368, 408, 514
AfaI	GTAC	6 cut(s)	161, 335, 530, 668, 785, 884
AfiI	CCNNNNNNNGG	3 cut(s)	363, 470, 753
AgsI	TTSAA	3 cut(s)	452, 625, 944
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AleI	CACNNNNGTG	1 cut(s)	905
AluBI	AGCT	7 cut(s)	189, 218, 497, 604, 710, 806, 1030
AluI	AGCT	7 cut(s)	189, 218, 497, 604, 710, 806, 1030
AlwI	GGATC	4 cut(s)	149, 511, 841, 918
AlwNI	CAGNNNCTG	1 cut(s)	500
ApeKI	GCWGC	4 cut(s)	218, 494, 725, 806
ApoI	RAATTY	3 cut(s)	368, 408, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
Asp700I	GAANNNNTTC	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	952
BbsI	GAAGAC	1 cut(s)	951
BbvI	GCAGC	4 cut(s)	205, 506, 737, 793
BccI	CCATC	2 cut(s)	671, 982
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	674
BfaI	CTAG	2 cut(s)	413, 821
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	6 cut(s)	219, 495, 726, 769, 807, 864
BlsI	GCNGC	6 cut(s)	220, 496, 727, 770, 808, 865
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	2 cut(s)	231, 674
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	2 cut(s)	115, 355
BmrFI	CCNGG	2 cut(s)	231, 674
BmsI	GCATC	4 cut(s)	235, 607, 705, 781
BpiI	GAAGAC	1 cut(s)	951
BpuMI	CCSGG	1 cut(s)	674
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	229, 850, 906
BsaWI	WCCGGW	1 cut(s)	1010
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 470, 753
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	229, 850, 906
BseGI	GGATG	2 cut(s)	304, 682
BseLI	CCNNNNNNNGG	3 cut(s)	363, 470, 753
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	3 cut(s)	619, 702, 771
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	4 cut(s)	205, 506, 737, 793
BsgI	GTGCAG	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	999
Bsh1285I	CGRYCG	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	153
BsiSI	CCGG	4 cut(s)	567, 674, 795, 1011
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	363, 470, 753
BsmFI	GGGAC	1 cut(s)	367
Bsp143I	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
BspACI	CCGC	6 cut(s)	108, 172, 768, 863, 938, 999
BspCNI	CTCAG	3 cut(s)	618, 703, 772
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	999
BspLI	GGNNCC	2 cut(s)	115, 355
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	171
BspPI	GGATC	4 cut(s)	149, 511, 841, 918
BspQI	GCTCTTC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	587
BssECI	CCNNGG	3 cut(s)	229, 850, 906
BssMI	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
BssSI	CACGAG	1 cut(s)	952
BssT1I	CCWWGG	1 cut(s)	850
Bst2BI	CACGAG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	340, 528, 907
Bst6I	CTCTTC	1 cut(s)	630
BstC8I	GCNNGC	4 cut(s)	461, 804, 936, 1032
BstDEI	CTNAG	3 cut(s)	605, 711, 780
BstDSI	CCRYGG	1 cut(s)	906
BstENI	CCTNNNNNAGG	1 cut(s)	751
BstF5I	GGATG	2 cut(s)	304, 682
BstFNI	CGCG	1 cut(s)	999
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	6 cut(s)	153, 157, 506, 849, 871, 913
BstMBI	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 808, 817
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	229, 672
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	999
BstV1I	GCAGC	4 cut(s)	205, 506, 737, 793
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	1 cut(s)	846
BstXI	CCANNNNNNTGG	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	846
Bsu15I	ATCGAT	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	2 cut(s)	304, 682
BtsIMutI	CAGTG	2 cut(s)	117, 336
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	4 cut(s)	461, 804, 936, 1032
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	354
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	6 cut(s)	160, 334, 529, 667, 784, 883
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	5 cut(s)	175, 358, 739, 772, 874
CviQI	GTAC	6 cut(s)	160, 334, 529, 667, 784, 883
DdeI	CTNAG	3 cut(s)	605, 711, 780
DpnI	GATC	6 cut(s)	152, 156, 505, 848, 870, 912
DpnII	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
DraI	TTTAAA	1 cut(s)	648
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	850
Eco47I	GGWCC	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	850
ErhI	CCWWGG	1 cut(s)	850
FaeI	CATG	5 cut(s)	178, 361, 742, 775, 877
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	5 cut(s)	174, 357, 738, 771, 873
FauNDI	CATATG	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	6 cut(s)	219, 495, 726, 769, 807, 864
FokI	GGATG	2 cut(s)	311, 689
Fsp4HI	GCNGC	6 cut(s)	219, 495, 726, 769, 807, 864
FspBI	CTAG	2 cut(s)	413, 821
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	6 cut(s)	219, 495, 726, 769, 807, 864
HapII	CCGG	4 cut(s)	567, 674, 795, 1011
HhaI	GCGC	1 cut(s)	811
Hin1II	CATG	5 cut(s)	178, 361, 742, 775, 877
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HindIII	AAGCTT	1 cut(s)	1028
HinfI	GANTC	3 cut(s)	62, 280, 609
HpaII	CCGG	4 cut(s)	567, 674, 795, 1011
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	5 cut(s)	336, 425, 654, 786, 883
Hpy188I	TCNGA	5 cut(s)	67, 524, 608, 781, 889
Hpy188III	TCNNGA	3 cut(s)	130, 284, 501
Hpy8I	GTNNAC	5 cut(s)	336, 425, 654, 786, 883
Hpy99I	CGWCG	4 cut(s)	47, 50, 227, 617
HpyAV	CCTTC	4 cut(s)	289, 344, 631, 757
HpyCH4III	ACNGT	3 cut(s)	340, 528, 907
HpyCH4IV	ACGT	1 cut(s)	825
HpyCH4V	TGCA	8 cut(s)	21, 166, 459, 494, 630, 834, 934, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 808, 817
HpyF3I	CTNAG	3 cut(s)	605, 711, 780
HpySE526I	ACGT	1 cut(s)	825
Hsp92II	CATG	5 cut(s)	178, 361, 742, 775, 877
HspAI	GCGC	1 cut(s)	809
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	2 cut(s)	194, 707
Lsp1109I	GCAGC	4 cut(s)	205, 506, 737, 793
LweI	GCATC	4 cut(s)	235, 607, 705, 781
MaeI	CTAG	2 cut(s)	413, 821
MaeII	ACGT	1 cut(s)	825
MaeIII	GTNAC	2 cut(s)	7, 583
MalI	GATC	6 cut(s)	152, 156, 505, 848, 870, 912
MboI	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
MboII	GAAGA	3 cut(s)	647, 908, 956
MflI	RGATCY	1 cut(s)	846
MluCI	AATT	7 cut(s)	208, 240, 368, 408, 514, 840, 928
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	3 cut(s)	385, 490, 502
MnlI	CCTC	3 cut(s)	50, 67, 202
MroXI	GAANNNNTTC	1 cut(s)	746
MseI	TTAA	3 cut(s)	647, 843, 1026
MslI	CAYNNNNRTG	3 cut(s)	876, 878, 905
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	4 cut(s)	567, 674, 795, 1011
MspR9I	CCNGG	2 cut(s)	231, 674
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	999
MwoI	GCNNNNNNNGC	3 cut(s)	224, 808, 817
NciI	CCSGG	1 cut(s)	674
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
NlaIII	CATG	5 cut(s)	178, 361, 742, 775, 877
NlaIV	GGNNCC	2 cut(s)	115, 355
NmuCI	GTSAC	1 cut(s)	583
OliI	CACNNNNGTG	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	280, 609
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	6 cut(s)	220, 496, 727, 770, 808, 865
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	115, 355
PspPI	GGNCC	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	846
PvuI	CGATCG	1 cut(s)	153
RsaI	GTAC	6 cut(s)	161, 335, 530, 668, 785, 884
RsaNI	GTAC	6 cut(s)	160, 334, 529, 667, 784, 883
RseI	CAYNNNNRTG	3 cut(s)	876, 878, 905
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	647, 843, 1026
SatI	GCNGC	6 cut(s)	219, 495, 726, 769, 807, 864
Sau3AI	GATC	6 cut(s)	150, 154, 503, 846, 868, 910
Sau96I	GGNCC	1 cut(s)	354
ScaI	AGTACT	1 cut(s)	668
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	231, 674
SfaNI	GCATC	4 cut(s)	235, 607, 705, 781
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	3 cut(s)	876, 878, 905
Sse9I	AATT	7 cut(s)	208, 240, 368, 408, 514, 840, 928
SsiI	CCGC	6 cut(s)	108, 172, 768, 863, 938, 999
SspMI	CTAG	2 cut(s)	413, 821
StyD4I	CCNGG	2 cut(s)	229, 672
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	3 cut(s)	340, 528, 907
TaiI	ACGT	1 cut(s)	828
TaqI	TCGA	4 cut(s)	42, 149, 153, 612
TasI	AATT	7 cut(s)	208, 240, 368, 408, 514, 840, 928
TatI	WGTACW	4 cut(s)	333, 666, 783, 882
TauI	GCSGC	2 cut(s)	771, 866
TfiI	GAWTC	2 cut(s)	280, 609
Tru1I	TTAA	3 cut(s)	647, 843, 1026
Tru9I	TTAA	3 cut(s)	647, 843, 1026
TscAI	CASTG	2 cut(s)	124, 343
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	4 cut(s)	218, 494, 725, 806
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	6 cut(s)	191, 252, 307, 755, 890, 973
TspGWI	ACGGA	2 cut(s)	63, 147
TspRI	CASTG	2 cut(s)	124, 343
VpaK11BI	GGWCC	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	751
XapI	RAATTY	3 cut(s)	368, 408, 514
XmnI	GAANNNNTTC	1 cut(s)	746
XspI	CTAG	2 cut(s)	413, 821
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.