Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008134

Physical Location & Seq

Genomic Coordinates Forward (+)

3070536 .. 3071961

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46387

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGGTAACCAATAGGTACATCACCATAAAGACTCAGGTAGACGGAGAGCCCAAAGAGTCGGATTTCGAGCTGAAAACTTCAGCCCTTTCACTCTCACTTGACCCCAGTTCCAATGACATCATTGTGAAGAATCTGTATGTGTCAATCGACCCTTACCAGCTAAACCGCATGAAAAGTCAGAGCTCATCACAGAAAGCTATAGGTTTTGCAGCAGCCATCACTCCGGGCGAGGATATTGATGCTTATGGTGTCGCGAAGGTTGTGGCTTCTGGGAACCCTGAGTTTGAGAAGGATGACTTGGTTGTGGGGCTCATCACTTGGGGAGAGTACAGTTTGCTAAAAGGAGGAAAATACATGCTGAGGAAATTTGATCCTATGGGATTCCCACTTGGACTTACAGCATATGGTGGATTTTTTGAAGTATGCAAACCGAAGAAGGGGGAGAAAGTTTTCGTCTCTGCAGCATCTGGATCGGTTGGGAATTTGGTCGGACAATATGCAAAGCTTTTTGGTTGCTATGTTGTTGGATGTGCAGGAAGCAAAGAAAAGGTAGCATTGCTTAAGGAAAAGCTTGGATTTGATGATGCATTCAACTACAAGGAAGAGCCTGATTTGAAGGCAGCTCTCCAAAGGTACTTCCCTGATGGGATTGACATCTACTTTGATAATGTGGGGTTTGAAATGCTAGAGGCTGCAGTTGTTAACATGAACACCTTCGGTAGAGTTGCTGTCTGCGGCGTGATCTCCGAGTACATTGATGCTACGAAGCGAGCCGCCCCCAATATGCTAGATGTTGTGTACAAGAGAATTAAAATCCAAGGGTTTCTAGCAGCCGATCAAATGAATGTGTTTCCGGATTTCCTCTCCACCACAACTGATCATCTTCGTACAGGAAAATTGCATGCGGTTGAAGACATCTCAGATGGTGTGGAGAGTTTCCCATCGGCTTTCATTGGACTTTTTCGTGGTCATAACACTGGAAAGAAAATGGTTAAAGTTGCAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

337

Amino Acids

36.86

Weight (kDa)

5.35

Isoelectric Point (pI)

18.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	6 - 118	2.3e-18	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	160 - 289	1.2e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03870
malus_domestica	MD15G1173200.v1.1 MD15G1173400.v1.1
prunus_persica	Prupe.7G242400_v2.0.a1 Prupe.7G242400_v2.0.a1
pyrus_communis	pycom15g15510 pycom15g15530 pycom15g15540
rosa_chinensis	RchiOBHm_Chr2g0088551 RchiOBHm_Chr2g0088561
rosa_laevigata	RLG00000015962 RLG00000015965
rosa_multiflora	Rmu_co8462133.1_g000001 Rmu_sc0004733.1_g000007 Rmu_sc0041148.1_g000001 Rmu_sc0041185.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152610
rosa_rugosa	Rorug01G0485000 Rorug01G0485100
rosa_samantha	Rh2AG039800 Rh2CG039900 Rh2DG039200
rosa_wichuraiana	Rw2G003110 Rw2G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	4 cut(s)	169, 738, 777, 908
AclWI	GGATC	2 cut(s)	368, 481
AcsI	RAATTY	2 cut(s)	368, 484
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	6 cut(s)	20, 332, 638, 755, 803, 892
AfiI	CCNNNNNNNGG	1 cut(s)	440
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	422, 595, 619, 683, 914
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	7 cut(s)	73, 163, 186, 200, 508, 574, 626
AluI	AGCT	7 cut(s)	73, 163, 186, 200, 508, 574, 626
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	2 cut(s)	368, 481
AlwNI	CAGNNNCTG	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	856
ApeKI	GCWGC	6 cut(s)	212, 215, 464, 623, 695, 833
ApoI	RAATTY	2 cut(s)	368, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
Asp700I	GAANNNNTTC	2 cut(s)	452, 716
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	16
BanII	GRGCYC	3 cut(s)	54, 188, 315
BbsI	GAAGAC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	6 cut(s)	224, 227, 476, 635, 682, 845
BccI	CCATC	4 cut(s)	227, 641, 920, 952
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	3 cut(s)	689, 791, 830
BfmI	CTRYAG	3 cut(s)	201, 462, 696
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	8 cut(s)	213, 216, 465, 624, 696, 739, 777, 834
BlsI	GCNGC	8 cut(s)	214, 217, 466, 625, 697, 740, 778, 835
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	4 cut(s)	232, 476, 577, 751
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	656
BsaJI	CCNNGG	1 cut(s)	820
BsaWI	WCCGGW	1 cut(s)	856
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	2 cut(s)	108, 985
Bse3DI	GCAATG	1 cut(s)	557
Bse8I	GATNNNNATC	1 cut(s)	656
BseAI	TCCGGA	1 cut(s)	856
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	2 cut(s)	301, 536
BseJI	GATNNNNATC	1 cut(s)	656
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMI	GCAATG	1 cut(s)	557
BseMII	CTCAG	4 cut(s)	50, 273, 353, 936
BseNI	ACTGG	2 cut(s)	108, 985
BseXI	GCAGC	6 cut(s)	224, 227, 476, 635, 682, 845
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	227, 857
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	463
BsmBI	CGTCTC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	590
Bsp1286I	GDGCHC	3 cut(s)	54, 188, 315
Bsp13I	TCCGGA	1 cut(s)	856
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	5 cut(s)	373, 473, 744, 838, 880
Bsp68I	TCGCGA	1 cut(s)	257
BspACI	CCGC	4 cut(s)	169, 738, 777, 908
BspCNI	CTCAG	4 cut(s)	49, 274, 354, 935
BspEI	TCCGGA	1 cut(s)	856
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	2 cut(s)	466, 700
BspPI	GGATC	2 cut(s)	368, 481
BspQI	GCTCTTC	1 cut(s)	600
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	557
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	2 cut(s)	108, 985
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	5 cut(s)	373, 473, 744, 838, 880
BssT1I	CCWWGG	1 cut(s)	820
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	600
BstAFI	CTTAAG	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	774, 906
BstDEI	CTNAG	4 cut(s)	36, 282, 362, 922
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	301, 536
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	5 cut(s)	376, 476, 747, 841, 883
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	5 cut(s)	373, 473, 744, 838, 880
BstNSI	RCATGY	2 cut(s)	361, 908
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	3 cut(s)	201, 462, 696
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	6 cut(s)	224, 227, 476, 635, 682, 845
BstV2I	GAAGAC	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	301, 536
BtsIMutI	CAGTG	1 cut(s)	978
BtuMI	TCGCGA	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	774, 906
CaiI	CAGNNNCTG	1 cut(s)	470
Csp6I	GTAC	6 cut(s)	19, 331, 637, 754, 802, 891
CviAII	CATG	4 cut(s)	172, 358, 709, 905
CviQI	GTAC	6 cut(s)	19, 331, 637, 754, 802, 891
DdeI	CTNAG	4 cut(s)	36, 282, 362, 922
DpnI	GATC	5 cut(s)	375, 475, 746, 840, 882
DpnII	GATC	5 cut(s)	373, 473, 744, 838, 880
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	820
Eco24I	GRGCYC	3 cut(s)	54, 188, 315
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	66
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	186
EcoO65I	GGTNACC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	820
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	3 cut(s)	54, 188, 315
ErhI	CCWWGG	1 cut(s)	820
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	4 cut(s)	175, 361, 712, 908
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	4 cut(s)	171, 357, 708, 904
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	880
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	8 cut(s)	213, 216, 465, 624, 696, 739, 777, 834
FokI	GGATG	2 cut(s)	308, 543
FriOI	GRGCYC	3 cut(s)	54, 188, 315
Fsp4HI	GCNGC	8 cut(s)	213, 216, 465, 624, 696, 739, 777, 834
FspBI	CTAG	3 cut(s)	689, 791, 830
GluI	GCNGC	8 cut(s)	213, 216, 465, 624, 696, 739, 777, 834
HapII	CCGG	2 cut(s)	227, 857
Hin1II	CATG	4 cut(s)	175, 361, 712, 908
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	2 cut(s)	506, 572
HinfI	GANTC	4 cut(s)	34, 59, 133, 384
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	2 cut(s)	227, 857
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	43, 706, 802
Hpy188I	TCNGA	5 cut(s)	64, 183, 494, 751, 925
Hpy188III	TCNNGA	3 cut(s)	256, 471, 857
Hpy8I	GTNNAC	3 cut(s)	43, 706, 802
HpyAV	CCTTC	5 cut(s)	253, 286, 433, 613, 727
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	9 cut(s)	212, 429, 464, 503, 536, 590, 698, 904, 1004
HpyF3I	CTNAG	4 cut(s)	36, 282, 362, 922
Hsp92II	CATG	4 cut(s)	175, 361, 712, 908
Kpn2I	TCCGGA	1 cut(s)	856
Ksp22I	TGATCA	1 cut(s)	880
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	5 cut(s)	373, 473, 744, 838, 880
LguI	GCTCTTC	1 cut(s)	600
Lsp1109I	GCAGC	6 cut(s)	224, 227, 476, 635, 682, 845
LweI	GCATC	4 cut(s)	232, 476, 577, 751
MaeI	CTAG	3 cut(s)	689, 791, 830
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	5 cut(s)	375, 475, 746, 840, 882
MboI	GATC	5 cut(s)	373, 473, 744, 838, 880
MboII	GAAGA	5 cut(s)	142, 448, 617, 878, 926
MhlI	GDGCHC	3 cut(s)	54, 188, 315
MluCI	AATT	4 cut(s)	368, 484, 810, 899
MlyI	GAGTC	2 cut(s)	28, 68
MmeI	TCCRAC	3 cut(s)	42, 472, 508
MnlI	CCTC	5 cut(s)	226, 341, 357, 685, 875
Mph1103I	ATGCAT	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	856
MroXI	GAANNNNTTC	2 cut(s)	452, 716
MseI	TTAA	4 cut(s)	564, 705, 813, 996
MslI	CAYNNNNRTG	1 cut(s)	125
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	2 cut(s)	227, 857
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	590
MvnI	CGCG	1 cut(s)	257
NciI	CCSGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	5 cut(s)	373, 473, 744, 838, 880
NlaIII	CATG	4 cut(s)	175, 361, 712, 908
NlaIV	GGNNCC	1 cut(s)	278
NruI	TCGCGA	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	2 cut(s)	361, 908
PaeI	GCATGC	1 cut(s)	908
PciSI	GCTCTTC	1 cut(s)	600
PctI	GAATGC	1 cut(s)	590
PdmI	GAANNNNTTC	2 cut(s)	452, 716
PfeI	GAWTC	2 cut(s)	133, 384
PkrI	GCNGC	8 cut(s)	214, 217, 466, 625, 697, 740, 778, 835
PleI	GAGTC	2 cut(s)	28, 67
PpsI	GAGTC	2 cut(s)	28, 67
Psp124BI	GAGCTC	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	278
PstI	CTGCAG	2 cut(s)	466, 700
PstNI	CAGNNNCTG	1 cut(s)	470
RruI	TCGCGA	1 cut(s)	257
RsaI	GTAC	6 cut(s)	20, 332, 638, 755, 803, 892
RsaNI	GTAC	6 cut(s)	19, 331, 637, 754, 802, 891
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	564, 705, 813, 996
SatI	GCNGC	8 cut(s)	213, 216, 465, 624, 696, 739, 777, 834
Sau3AI	GATC	5 cut(s)	373, 473, 744, 838, 880
SchI	GAGTC	2 cut(s)	28, 68
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	3 cut(s)	54, 188, 315
SfaNI	GCATC	4 cut(s)	232, 476, 577, 751
SfcI	CTRYAG	3 cut(s)	201, 462, 696
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SphI	GCATGC	1 cut(s)	908
Sse9I	AATT	4 cut(s)	368, 484, 810, 899
SsiI	CCGC	4 cut(s)	169, 738, 777, 908
SspMI	CTAG	3 cut(s)	689, 791, 830
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	69, 150
TasI	AATT	4 cut(s)	368, 484, 810, 899
TatI	WGTACW	3 cut(s)	330, 753, 801
TauI	GCSGC	2 cut(s)	741, 779
TfiI	GAWTC	2 cut(s)	133, 384
Tru1I	TTAA	4 cut(s)	564, 705, 813, 996
Tru9I	TTAA	4 cut(s)	564, 705, 813, 996
TscAI	CASTG	1 cut(s)	985
TseI	GCWGC	6 cut(s)	212, 215, 464, 623, 695, 833
TspDTI	ATGAA	4 cut(s)	188, 725, 860, 943
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	985
Vha464I	CTTAAG	1 cut(s)	563
XapI	RAATTY	2 cut(s)	368, 484
XceI	RCATGY	2 cut(s)	361, 908
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	2 cut(s)	452, 716
XspI	CTAG	3 cut(s)	689, 791, 830
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.