Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041148.1

Orthogroup ID

OG0008134

Physical Location & Seq

Genomic Coordinates Reverse (-)

422 .. 1812

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041148.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgcaggtaaccaataggtacatcaccataaagactcaggtagacggagagcccaaagagtcggatttcgagctcaaaacttcagccctttcactctcacttgaccccagttccaatgacatcattgtgaagaatctgtatgtgtcaatcgacccttaccagctaaaccgcatgaaaagtcagagctcatcacagaaagctataggttttgcagcagccatcactccgggcgaggatattgatgcttatggtgtcgcgaaggttgtggcttctgggaaccctgagtttgagaaggatgacttggttgtggggctcatcacttggggagagtacagtgtgctaaaaggagcaaaatacatgttgaggaaatttgatcctatgggattcccactgtcttaccaagttggaattctaggtttcagtggacttacagcatatggtggattttttgaaatatgcaaaccgaagaagggggagaaagttttcgtctctgcagcttctggatcagttgggaatttggtcggacaatatgcaaagctttttggttgctatgttgttggatgtgcaggaagcaaagaaaaggtagcattgcttaaggaaaagcttggatttgatgatgcattcaactacaaggaagagcctgatttgaaggcagctctccaaaggtacttccctgatgggattgacatctactttgataatgtggggtttgaaatgctagaggctgcagttgttaacatgaacaccttcggtagagttgctgtctgcggcgtgatctccgagtacattgatgctacgaagcgagccgcacccaatatgctagatgttgtgtacaagagaattaaaatccaagggtttctagcagccgatcaaatgaatgtgtttccggatttcctttccaccacaactgatcatcttcgtacaggaaaattgcatgcggttgaagacatctcagatggtgtggagagtttcccatcggctttcattggactttttcgtggtcataacactggaaagaaaatggttaaagttgcagatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

347

Amino Acids

37.93

Weight (kDa)

5.46

Isoelectric Point (pI)

17.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03870
malus_domestica	MD15G1173200.v1.1 MD15G1173400.v1.1
prunus_persica	Prupe.7G242400_v2.0.a1 Prupe.7G242400_v2.0.a1
pyrus_communis	pycom15g15510 pycom15g15530 pycom15g15540
rosa_chinensis	RchiOBHm_Chr2g0088551 RchiOBHm_Chr2g0088561
rosa_laevigata	RLG00000015962 RLG00000015965
rosa_multiflora	Rmu_co8462133.1_g000001 Rmu_sc0004733.1_g000007 Rmu_sc0041148.1_g000001 Rmu_sc0041185.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152610
rosa_rugosa	Rorug01G0485000 Rorug01G0485100
rosa_samantha	Rh2AG039800 Rh2CG039900 Rh2DG039200
rosa_wichuraiana	Rw2G003110 Rw2G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	886
AciI	CCGC	4 cut(s)	169, 768, 807, 938
AclWI	GGATC	2 cut(s)	368, 511
AcsI	RAATTY	3 cut(s)	368, 408, 514
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	6 cut(s)	20, 332, 668, 785, 833, 922
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflII	CTTAAG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	5 cut(s)	452, 625, 649, 713, 944
AjuI	GAANNNNNNNTTGG	4 cut(s)	284, 316, 393, 425
AluBI	AGCT	8 cut(s)	73, 163, 186, 200, 497, 538, 604, 656
AluI	AGCT	8 cut(s)	73, 163, 186, 200, 497, 538, 604, 656
Alw21I	GWGCWC	2 cut(s)	75, 188
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	2 cut(s)	368, 511
AlwNI	CAGNNNCTG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	886
ApeKI	GCWGC	6 cut(s)	212, 215, 494, 653, 725, 863
ApoI	RAATTY	3 cut(s)	368, 408, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
Asp700I	GAANNNNTTC	2 cut(s)	482, 746
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	16
BanII	GRGCYC	4 cut(s)	54, 75, 188, 315
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	2 cut(s)	75, 188
BbvI	GCAGC	6 cut(s)	224, 227, 506, 665, 712, 875
BccI	CCATC	4 cut(s)	227, 671, 950, 982
BclI	TGATCA	1 cut(s)	910
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	4 cut(s)	413, 719, 821, 860
BfmI	CTRYAG	3 cut(s)	201, 492, 726
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	8 cut(s)	213, 216, 495, 654, 726, 769, 807, 864
BlsI	GCNGC	8 cut(s)	214, 217, 496, 655, 727, 770, 808, 865
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	3 cut(s)	232, 607, 781
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	951
BpuMI	CCSGG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	686
BsaJI	CCNNGG	1 cut(s)	850
BsaWI	WCCGGW	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	108, 1015
Bse3DI	GCAATG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	686
BseAI	TCCGGA	1 cut(s)	886
BseDI	CCNNGG	1 cut(s)	850
BseGI	GGATG	2 cut(s)	301, 566
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	3 cut(s)	50, 273, 966
BseNI	ACTGG	2 cut(s)	108, 1015
BseXI	GCAGC	6 cut(s)	224, 227, 506, 665, 712, 875
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	75, 188
BsiSI	CCGG	2 cut(s)	227, 887
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	493
BsmBI	CGTCTC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	620
Bsp1286I	GDGCHC	4 cut(s)	54, 75, 188, 315
Bsp13I	TCCGGA	1 cut(s)	886
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	5 cut(s)	373, 503, 774, 868, 910
Bsp68I	TCGCGA	1 cut(s)	257
BspACI	CCGC	4 cut(s)	169, 768, 807, 938
BspCNI	CTCAG	3 cut(s)	49, 274, 965
BspEI	TCCGGA	1 cut(s)	886
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	2 cut(s)	496, 730
BspPI	GGATC	2 cut(s)	368, 511
BspQI	GCTCTTC	1 cut(s)	630
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	587
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	2 cut(s)	108, 1015
BssECI	CCNNGG	1 cut(s)	850
BssMI	GATC	5 cut(s)	373, 503, 774, 868, 910
BssT1I	CCWWGG	1 cut(s)	850
Bst4CI	ACNGT	2 cut(s)	335, 393
Bst6I	CTCTTC	1 cut(s)	630
BstAFI	CTTAAG	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	831
BstC8I	GCNNGC	2 cut(s)	804, 936
BstDEI	CTNAG	3 cut(s)	36, 282, 952
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	301, 566
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	5 cut(s)	376, 506, 777, 871, 913
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	5 cut(s)	373, 503, 774, 868, 910
BstNSI	RCATGY	2 cut(s)	361, 938
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	3 cut(s)	201, 492, 726
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	6 cut(s)	224, 227, 506, 665, 712, 875
BstV2I	GAAGAC	1 cut(s)	951
BtsCI	GGATG	2 cut(s)	301, 566
BtsIMutI	CAGTG	4 cut(s)	340, 389, 427, 1008
BtuMI	TCGCGA	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	804, 936
CaiI	CAGNNNCTG	1 cut(s)	500
Csp6I	GTAC	6 cut(s)	19, 331, 667, 784, 832, 921
CviAII	CATG	4 cut(s)	172, 358, 739, 935
CviQI	GTAC	6 cut(s)	19, 331, 667, 784, 832, 921
DdeI	CTNAG	3 cut(s)	36, 282, 952
DpnI	GATC	5 cut(s)	375, 505, 776, 870, 912
DpnII	GATC	5 cut(s)	373, 503, 774, 868, 910
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	2 cut(s)	73, 186
Eco130I	CCWWGG	1 cut(s)	850
Eco24I	GRGCYC	4 cut(s)	54, 75, 188, 315
Eco53kI	GAGCTC	2 cut(s)	73, 186
Eco57I	CTGAAG	1 cut(s)	66
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	2 cut(s)	73, 186
EcoO65I	GGTNACC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	850
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	4 cut(s)	54, 75, 188, 315
ErhI	CCWWGG	1 cut(s)	850
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	4 cut(s)	175, 361, 742, 938
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	4 cut(s)	171, 357, 738, 934
FauNDI	CATATG	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	910
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	8 cut(s)	213, 216, 495, 654, 726, 769, 807, 864
FokI	GGATG	2 cut(s)	308, 573
FriOI	GRGCYC	4 cut(s)	54, 75, 188, 315
Fsp4HI	GCNGC	8 cut(s)	213, 216, 495, 654, 726, 769, 807, 864
FspBI	CTAG	4 cut(s)	413, 719, 821, 860
GluI	GCNGC	8 cut(s)	213, 216, 495, 654, 726, 769, 807, 864
HapII	CCGG	2 cut(s)	227, 887
Hin1II	CATG	4 cut(s)	175, 361, 742, 938
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	2 cut(s)	536, 602
HinfI	GANTC	4 cut(s)	34, 59, 133, 384
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	2 cut(s)	227, 887
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	43, 425, 736, 832
Hpy188I	TCNGA	5 cut(s)	64, 183, 524, 781, 955
Hpy188III	TCNNGA	3 cut(s)	256, 501, 887
Hpy8I	GTNNAC	4 cut(s)	43, 425, 736, 832
HpyAV	CCTTC	5 cut(s)	253, 286, 463, 643, 757
HpyCH4III	ACNGT	2 cut(s)	335, 393
HpyF3I	CTNAG	3 cut(s)	36, 282, 952
Hsp92II	CATG	4 cut(s)	175, 361, 742, 938
Kpn2I	TCCGGA	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	910
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	373, 503, 774, 868, 910
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	6 cut(s)	224, 227, 506, 665, 712, 875
LweI	GCATC	3 cut(s)	232, 607, 781
MaeI	CTAG	4 cut(s)	413, 719, 821, 860
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	5 cut(s)	375, 505, 776, 870, 912
MboI	GATC	5 cut(s)	373, 503, 774, 868, 910
MboII	GAAGA	5 cut(s)	142, 478, 647, 908, 956
MhlI	GDGCHC	4 cut(s)	54, 75, 188, 315
MluCI	AATT	5 cut(s)	368, 408, 514, 840, 929
MlyI	GAGTC	2 cut(s)	28, 68
MmeI	TCCRAC	4 cut(s)	42, 385, 502, 538
MnlI	CCTC	3 cut(s)	226, 357, 715
Mph1103I	ATGCAT	1 cut(s)	622
MroI	TCCGGA	1 cut(s)	886
MroXI	GAANNNNTTC	2 cut(s)	482, 746
MseI	TTAA	4 cut(s)	594, 735, 843, 1026
MslI	CAYNNNNRTG	1 cut(s)	125
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	2 cut(s)	227, 887
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	620
MvnI	CGCG	1 cut(s)	257
NciI	CCSGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	5 cut(s)	373, 503, 774, 868, 910
NlaIII	CATG	4 cut(s)	175, 361, 742, 938
NlaIV	GGNNCC	1 cut(s)	278
NruI	TCGCGA	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	2 cut(s)	361, 938
PaeI	GCATGC	1 cut(s)	938
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	630
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	2 cut(s)	482, 746
PfeI	GAWTC	2 cut(s)	133, 384
PkrI	GCNGC	8 cut(s)	214, 217, 496, 655, 727, 770, 808, 865
PleI	GAGTC	2 cut(s)	28, 67
PpsI	GAGTC	2 cut(s)	28, 67
PscI	ACATGT	1 cut(s)	357
Psp124BI	GAGCTC	2 cut(s)	75, 188
PspEI	GGTNACC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	278
PstI	CTGCAG	2 cut(s)	496, 730
PstNI	CAGNNNCTG	1 cut(s)	500
RruI	TCGCGA	1 cut(s)	257
RsaI	GTAC	6 cut(s)	20, 332, 668, 785, 833, 922
RsaNI	GTAC	6 cut(s)	19, 331, 667, 784, 832, 921
RseI	CAYNNNNRTG	1 cut(s)	125
SacI	GAGCTC	2 cut(s)	75, 188
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	4 cut(s)	594, 735, 843, 1026
SatI	GCNGC	8 cut(s)	213, 216, 495, 654, 726, 769, 807, 864
Sau3AI	GATC	5 cut(s)	373, 503, 774, 868, 910
SchI	GAGTC	2 cut(s)	28, 68
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	4 cut(s)	54, 75, 188, 315
SfaNI	GCATC	3 cut(s)	232, 607, 781
SfcI	CTRYAG	3 cut(s)	201, 492, 726
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SphI	GCATGC	1 cut(s)	938
Sse9I	AATT	5 cut(s)	368, 408, 514, 840, 929
SsiI	CCGC	4 cut(s)	169, 768, 807, 938
SspMI	CTAG	4 cut(s)	413, 719, 821, 860
SstI	GAGCTC	2 cut(s)	75, 188
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	2 cut(s)	335, 393
TaqI	TCGA	2 cut(s)	69, 150
TasI	AATT	5 cut(s)	368, 408, 514, 840, 929
TatI	WGTACW	3 cut(s)	330, 783, 831
TauI	GCSGC	2 cut(s)	771, 809
TfiI	GAWTC	2 cut(s)	133, 384
Tru1I	TTAA	4 cut(s)	594, 735, 843, 1026
Tru9I	TTAA	4 cut(s)	594, 735, 843, 1026
TscAI	CASTG	4 cut(s)	340, 396, 427, 1015
TseI	GCWGC	6 cut(s)	212, 215, 494, 653, 725, 863
TspDTI	ATGAA	4 cut(s)	188, 755, 890, 973
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	4 cut(s)	340, 396, 427, 1015
Vha464I	CTTAAG	1 cut(s)	593
XapI	RAATTY	3 cut(s)	368, 408, 514
XceI	RCATGY	2 cut(s)	361, 938
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	2 cut(s)	482, 746
XspI	CTAG	4 cut(s)	413, 719, 821, 860
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.