Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004733.1

Orthogroup ID

OG0008134

Physical Location & Seq

Genomic Coordinates Reverse (-)

25546 .. 26977

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004733.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggaggtaaccaataggtacatcaccataaaggctctagtagacggagatccgaaagtatccgattttgagctcaaaacctcaaaccttcctctgtcacttgaccctggttccaatgacatcattgtgaagaatctgtacgtatcaatcgacccttaccagataaaccgaatgaaaagtcagagctcctcacagaaagctacagctacggcaggtgccatcactcccggtgaaggtattgatgcttacggtgtagcgaaagttgtggcttctgggaaccctgagtttgagaaggatgacttgattgtcgggtacatcacttggggagagtatagtttgcttaaaggaggaaattgcgtgttgaggaaatttactcctatgggattaccattgtcttaccaagttggaattctaggtttaagtggacttacagcatatggtggattttttgaagtgtgcaaaccaaagaagggggagaaagtttttgtctctacagcttgtggatcagttgggaatttggttggacagtatgctaagcttttcggttgctacgttgttggatgtgcaggaagtaaagaaaaggtagcattgctcaaggaaaagctaggattcgatgatgcattcaattacaaggaagagcctgatttaaagtcagctctccaaaggtactttcctgatgggattgacatctactttgacaatgtgggggctgaaatgctagaggctgcagttgctaacatgaacacctttggtagagttgctgcctgcggcgtgatctctgagtacactgacgctacgaagcgagctgcacccagtatgctagatgttgtgtacaagagaattaaaatccaaggatttttggtagttgatttcatgaacgtgttttcggaattcctttccaccacaaccgaccatctccgtacaggaaaattgcatgcacttgaagacatctcaaatgggttggagagtctcccatcggctttcattggactttttcgtggtcacaacactggaaagaaaatggttaaagttgcagatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

347

Amino Acids

37.57

Weight (kDa)

5.8

Isoelectric Point (pI)

15.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03870
malus_domestica	MD15G1173200.v1.1 MD15G1173400.v1.1
prunus_persica	Prupe.7G242400_v2.0.a1 Prupe.7G242400_v2.0.a1
pyrus_communis	pycom15g15510 pycom15g15530 pycom15g15540
rosa_chinensis	RchiOBHm_Chr2g0088551 RchiOBHm_Chr2g0088561
rosa_laevigata	RLG00000015962 RLG00000015965
rosa_multiflora	Rmu_co8462133.1_g000001 Rmu_sc0004733.1_g000007 Rmu_sc0041148.1_g000001 Rmu_sc0041185.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152610
rosa_rugosa	Rorug01G0485000 Rorug01G0485100
rosa_samantha	Rh2AG039800 Rh2CG039900 Rh2DG039200
rosa_wichuraiana	Rw2G003110 Rw2G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	203
AasI	GACNNNNNNGTC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	1 cut(s)	768
AclWI	GGATC	2 cut(s)	44, 511
AcsI	RAATTY	4 cut(s)	368, 408, 514, 890
AfaI	GTAC	7 cut(s)	20, 140, 314, 668, 785, 833, 922
AfiI	CCNNNNNNNGG	2 cut(s)	233, 470
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	3 cut(s)	452, 625, 944
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 425, 654, 686
AluBI	AGCT	9 cut(s)	73, 186, 200, 206, 497, 538, 604, 656, 806
AluI	AGCT	9 cut(s)	73, 186, 200, 206, 497, 538, 604, 656, 806
Alw21I	GWGCWC	2 cut(s)	75, 188
Alw26I	GTCTC	2 cut(s)	493, 974
AlwI	GGATC	2 cut(s)	44, 511
ApeKI	GCWGC	3 cut(s)	725, 761, 806
ApoI	RAATTY	4 cut(s)	368, 408, 514, 890
ArsI	GACNNNNNNTTYG	4 cut(s)	163, 195, 677, 709
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	16, 242
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	2 cut(s)	75, 188
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	2 cut(s)	75, 188
BbvI	GCAGC	3 cut(s)	712, 748, 793
BccI	CCATC	4 cut(s)	227, 671, 921, 982
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	108
BciVI	GTATCC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	493, 974
BfaI	CTAG	5 cut(s)	38, 413, 605, 719, 821
BfmI	CTRYAG	3 cut(s)	201, 492, 726
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	4 cut(s)	726, 762, 769, 807
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	4 cut(s)	727, 763, 770, 808
Bme1390I	CCNGG	2 cut(s)	108, 228
BmiI	GGNNCC	3 cut(s)	112, 217, 278
BmrFI	CCNGG	2 cut(s)	108, 228
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	2 cut(s)	232, 607
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	951
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	106, 850
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 470
Bse1I	ACTGG	2 cut(s)	813, 1015
Bse3DI	GCAATG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	686
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	106, 850
BseGI	GGATG	2 cut(s)	301, 566
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	2 cut(s)	233, 470
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	2 cut(s)	273, 771
BseNI	ACTGG	2 cut(s)	813, 1015
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	712, 748, 793
BsgI	GTGCAG	2 cut(s)	585, 792
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	75, 188
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	233, 470
BsmAI	GTCTC	2 cut(s)	493, 974
BsmI	GAATGC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	75, 188
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	3 cut(s)	49, 503, 774
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	1 cut(s)	768
BspCNI	CTCAG	2 cut(s)	274, 772
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	3 cut(s)	112, 217, 278
BspMAI	CTGCAG	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	2 cut(s)	44, 511
BspQI	GCTCTTC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	587
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	2 cut(s)	813, 1015
BssECI	CCNNGG	2 cut(s)	106, 850
BssMI	GATC	3 cut(s)	49, 503, 774
BssT1I	CCWWGG	1 cut(s)	850
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	251, 528
Bst6I	CTCTTC	1 cut(s)	630
BstAUI	TGTACA	1 cut(s)	831
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	3 cut(s)	766, 804, 936
BstDEI	CTNAG	3 cut(s)	282, 534, 780
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	301, 566
BstKTI	GATC	3 cut(s)	52, 506, 777
BstMAI	GTCTC	2 cut(s)	493, 974
BstMBI	GATC	3 cut(s)	49, 503, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	938
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	106, 226
BstSFI	CTRYAG	3 cut(s)	201, 492, 726
BstSNI	TACGTA	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	712, 748, 793
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	301, 566
BtsIMutI	CAGTG	2 cut(s)	786, 1008
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	3 cut(s)	766, 804, 936
CciI	TCATGA	1 cut(s)	873
CseI	GACGC	1 cut(s)	800
Csp6I	GTAC	7 cut(s)	19, 139, 313, 667, 784, 832, 921
CviAII	CATG	3 cut(s)	739, 874, 935
CviQI	GTAC	7 cut(s)	19, 139, 313, 667, 784, 832, 921
DdeI	CTNAG	3 cut(s)	282, 534, 780
DpnI	GATC	3 cut(s)	51, 505, 776
DpnII	GATC	3 cut(s)	49, 503, 774
DraI	TTTAAA	1 cut(s)	648
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	2 cut(s)	73, 186
Eco105I	TACGTA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	850
Eco24I	GRGCYC	2 cut(s)	75, 188
Eco53kI	GAGCTC	2 cut(s)	73, 186
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	2 cut(s)	73, 186
EcoO65I	GGTNACC	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	408, 890
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	850
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	2 cut(s)	75, 188
ErhI	CCWWGG	1 cut(s)	850
FaeI	CATG	3 cut(s)	742, 877, 938
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	3 cut(s)	738, 873, 934
FauNDI	CATATG	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	726, 762, 769, 807
FokI	GGATG	2 cut(s)	308, 573
FriOI	GRGCYC	2 cut(s)	75, 188
Fsp4HI	GCNGC	4 cut(s)	726, 762, 769, 807
FspBI	CTAG	5 cut(s)	38, 413, 605, 719, 821
GluI	GCNGC	4 cut(s)	726, 762, 769, 807
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	800
Hin1II	CATG	3 cut(s)	742, 877, 938
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	133, 609, 967
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	16, 242
Hpy166II	GTNNAC	4 cut(s)	43, 425, 786, 832
Hpy188I	TCNGA	5 cut(s)	54, 64, 183, 781, 889
Hpy188III	TCNNGA	2 cut(s)	674, 874
Hpy8I	GTNNAC	4 cut(s)	43, 425, 786, 832
HpyAV	CCTTC	4 cut(s)	98, 227, 286, 463
HpyCH4III	ACNGT	2 cut(s)	251, 528
HpyCH4IV	ACGT	3 cut(s)	141, 552, 879
HpyCH4V	TGCA	8 cut(s)	459, 566, 620, 728, 809, 934, 938, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	3 cut(s)	282, 534, 780
HpySE526I	ACGT	3 cut(s)	141, 552, 879
Hsp92II	CATG	3 cut(s)	742, 877, 938
Kzo9I	GATC	3 cut(s)	49, 503, 774
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	3 cut(s)	712, 748, 793
LweI	GCATC	2 cut(s)	232, 607
MaeI	CTAG	5 cut(s)	38, 413, 605, 719, 821
MaeII	ACGT	3 cut(s)	141, 552, 879
MaeIII	GTNAC	3 cut(s)	7, 96, 1001
MalI	GATC	3 cut(s)	51, 505, 776
MboI	GATC	3 cut(s)	49, 503, 774
MboII	GAAGA	3 cut(s)	142, 647, 956
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	75, 188
MluCI	AATT	8 cut(s)	352, 368, 408, 514, 625, 840, 890, 929
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	4 cut(s)	385, 502, 538, 942
MnlI	CCTC	6 cut(s)	91, 102, 199, 341, 357, 715
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	5 cut(s)	342, 419, 647, 843, 1026
MslI	CAYNNNNRTG	2 cut(s)	125, 878
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	108, 228
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	731
NciI	CCSGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	3 cut(s)	49, 503, 774
NlaIII	CATG	3 cut(s)	742, 877, 938
NlaIV	GGNNCC	3 cut(s)	112, 217, 278
NmuCI	GTSAC	2 cut(s)	96, 1001
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	938
PaeI	GCATGC	1 cut(s)	938
PagI	TCATGA	1 cut(s)	873
PaqCI	CACCTGC	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 549
PctI	GAATGC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	133, 609
PkrI	GCNGC	4 cut(s)	727, 763, 770, 808
PleI	GAGTC	1 cut(s)	975
PpsI	GAGTC	1 cut(s)	975
Ppu21I	YACGTR	1 cut(s)	142
Psp124BI	GAGCTC	2 cut(s)	75, 188
Psp6I	CCWGG	1 cut(s)	106
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	112, 217, 278
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	7 cut(s)	20, 140, 314, 668, 785, 833, 922
RsaNI	GTAC	7 cut(s)	19, 139, 313, 667, 784, 832, 921
RseI	CAYNNNNRTG	2 cut(s)	125, 878
SacI	GAGCTC	2 cut(s)	75, 188
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	5 cut(s)	342, 419, 647, 843, 1026
SatI	GCNGC	4 cut(s)	726, 762, 769, 807
Sau3AI	GATC	3 cut(s)	49, 503, 774
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	2 cut(s)	108, 228
SduI	GDGCHC	2 cut(s)	75, 188
SfaNI	GCATC	2 cut(s)	232, 607
SfcI	CTRYAG	3 cut(s)	201, 492, 726
SmiMI	CAYNNNNRTG	2 cut(s)	125, 878
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SnaBI	TACGTA	1 cut(s)	142
SphI	GCATGC	1 cut(s)	938
Sse9I	AATT	8 cut(s)	352, 368, 408, 514, 625, 840, 890, 929
SsiI	CCGC	1 cut(s)	768
SspMI	CTAG	5 cut(s)	38, 413, 605, 719, 821
SstI	GAGCTC	2 cut(s)	75, 188
StyD4I	CCNGG	2 cut(s)	106, 226
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	2 cut(s)	251, 528
TaiI	ACGT	3 cut(s)	144, 555, 882
TaqI	TCGA	2 cut(s)	150, 612
TasI	AATT	8 cut(s)	352, 368, 408, 514, 625, 840, 890, 929
TatI	WGTACW	2 cut(s)	783, 831
TauI	GCSGC	1 cut(s)	771
TfiI	GAWTC	2 cut(s)	133, 609
Tru1I	TTAA	5 cut(s)	342, 419, 647, 843, 1026
Tru9I	TTAA	5 cut(s)	342, 419, 647, 843, 1026
TscAI	CASTG	2 cut(s)	793, 1015
TseFI	GTSAC	2 cut(s)	96, 1001
TseI	GCWGC	3 cut(s)	725, 761, 806
Tsp45I	GTSAC	2 cut(s)	96, 1001
TspDTI	ATGAA	5 cut(s)	188, 755, 862, 890, 973
TspGWI	ACGGA	2 cut(s)	60, 908
TspRI	CASTG	2 cut(s)	793, 1015
XapI	RAATTY	4 cut(s)	368, 408, 514, 890
XceI	RCATGY	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	5 cut(s)	38, 413, 605, 719, 821
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.