Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008134

Physical Location & Seq

Genomic Coordinates Forward (+)

2747849 .. 2749821

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG039200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGGTAACCAATAGGTACATCACCATAAAGACTCAAGTAGACGGAGATCCGAAAGTATCCGATTTTGAGCTCAAAACCTCAAACCTTCCTCTGTCACTTGACCCTGGTTCCAATGACATCATTGTGAAGAATCTGTACGTATCAATCGACCCTTACCAGATAAACCGAATGAAAAGTCAGAGCTCCTCACAGAAAGCTACAGCTACGGCAGGAACCATCACTCCCGGTGAAGGTATTGATGCTTACGGTGTAGCGAAAGTTGTGGCTTCTGGGAACCCTGAGTTTGAGAAGGATGACTTGATTGTGGGGTACATCACTTGGGGAGAGTACAGTTTGCTTAAAGGAGGAAATTGCGTGTTGAGGAAATTTACTCCTATGGGATTACCATTGTCTTACCAAGTTGGAATTCTAGGTTTAAGTGGACTTACAGCATATGGTGGATTTTTTGAAGTGTGCAAACCAAAGAAGGGGGAGAAAGTTTTTGTCTCTACAGCTTGTGGATCAGTTGGGAATTTGGTTGGACAGTATGCTAAGCTTTTCGGTTGCTACGTTGTTGGATGTGCAGGAAGTAAAGAAAAGGTAGCATTGCTCAAGGAAAAGCTAGGATTCGATGATGCATTCAACTACAAGGAAGAGCCTGATTTAAAGTCAGCTCTCCAAAGGTACTTTCCTGATGGGATTGACATCTACTTTGACAATGTGGGGGCTGAAATGCTAGAGGCTGCAGTTGCTAACATGAACACCTTTGGTAGAGTTGCTGCCTGCGGCGTGATCTCTGAGTACACTGACGCTACGAAGCGAGCTGCACCCAGTATGCTAGATGTTGTGTACAAGAGAATTAAAATCCAAGGATTTTTGGTAGTTGATTTCATGAACGTGTTTTCGGAATTCCTTTCCACCACAACCGACCATCTCCGTACAGGAAAATTGCATGCACTTGAAGACATCTCAAATGGGTTGGAGAGTCTCCCATCGGCTTTCATTGGACTTTTTCGTGGTCACAACACTGGAAAGAAAATGGTTAAAGTTGCAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

347

Amino Acids

37.65

Weight (kDa)

5.8

Isoelectric Point (pI)

14.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	6 - 119	5.9e-18	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	170 - 300	1.3e-23	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	202 - 339	2.8e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03870
malus_domestica	MD15G1173200.v1.1 MD15G1173400.v1.1
prunus_persica	Prupe.7G242400_v2.0.a1 Prupe.7G242400_v2.0.a1
pyrus_communis	pycom15g15510 pycom15g15530 pycom15g15540
rosa_chinensis	RchiOBHm_Chr2g0088551 RchiOBHm_Chr2g0088561
rosa_laevigata	RLG00000015962 RLG00000015965
rosa_multiflora	Rmu_co8462133.1_g000001 Rmu_sc0004733.1_g000007 Rmu_sc0041148.1_g000001 Rmu_sc0041185.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152610
rosa_rugosa	Rorug01G0485000 Rorug01G0485100
rosa_samantha	Rh2AG039800 Rh2CG039900 Rh2DG039200
rosa_wichuraiana	Rw2G003110 Rw2G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	1 cut(s)	768
AclWI	GGATC	2 cut(s)	44, 511
AcsI	RAATTY	4 cut(s)	368, 408, 514, 890
AfaI	GTAC	8 cut(s)	20, 140, 314, 332, 668, 785, 833, 922
AfiI	CCNNNNNNNGG	2 cut(s)	233, 470
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	3 cut(s)	452, 625, 944
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 425, 654, 686
AloI	GAACNNNNNNTCC	2 cut(s)	208, 240
AluBI	AGCT	9 cut(s)	73, 186, 200, 206, 497, 538, 604, 656, 806
AluI	AGCT	9 cut(s)	73, 186, 200, 206, 497, 538, 604, 656, 806
Alw21I	GWGCWC	2 cut(s)	75, 188
Alw26I	GTCTC	2 cut(s)	493, 974
AlwI	GGATC	2 cut(s)	44, 511
ApeKI	GCWGC	3 cut(s)	725, 761, 806
ApoI	RAATTY	4 cut(s)	368, 408, 514, 890
ArsI	GACNNNNNNTTYG	4 cut(s)	163, 195, 677, 709
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	16, 242
BanII	GRGCYC	2 cut(s)	75, 188
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	2 cut(s)	75, 188
BbvI	GCAGC	3 cut(s)	712, 748, 793
BccI	CCATC	4 cut(s)	227, 671, 921, 982
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	108
BciVI	GTATCC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	493, 974
BfaI	CTAG	4 cut(s)	413, 605, 719, 821
BfmI	CTRYAG	3 cut(s)	201, 492, 726
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	4 cut(s)	726, 762, 769, 807
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	4 cut(s)	727, 763, 770, 808
Bme1390I	CCNGG	2 cut(s)	108, 228
BmiI	GGNNCC	3 cut(s)	112, 217, 278
BmrFI	CCNGG	2 cut(s)	108, 228
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	2 cut(s)	232, 607
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	951
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	21, 578
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	106, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 470
Bse1I	ACTGG	2 cut(s)	813, 1015
Bse3DI	GCAATG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	686
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	106, 850
BseGI	GGATG	2 cut(s)	301, 566
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	2 cut(s)	233, 470
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	2 cut(s)	273, 771
BseNI	ACTGG	2 cut(s)	813, 1015
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	712, 748, 793
BsgI	GTGCAG	2 cut(s)	585, 792
BsiHKAI	GWGCWC	2 cut(s)	75, 188
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	233, 470
BsmAI	GTCTC	2 cut(s)	493, 974
BsmI	GAATGC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	75, 188
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	3 cut(s)	49, 503, 774
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	1 cut(s)	768
BspCNI	CTCAG	2 cut(s)	274, 772
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	3 cut(s)	112, 217, 278
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	2 cut(s)	44, 511
BspQI	GCTCTTC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	587
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	2 cut(s)	813, 1015
BssECI	CCNNGG	2 cut(s)	106, 850
BssMI	GATC	3 cut(s)	49, 503, 774
BssT1I	CCWWGG	1 cut(s)	850
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	251, 335, 528
Bst6I	CTCTTC	1 cut(s)	630
BstAUI	TGTACA	1 cut(s)	831
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	3 cut(s)	766, 804, 936
BstDEI	CTNAG	3 cut(s)	282, 534, 780
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	301, 566
BstKTI	GATC	3 cut(s)	52, 506, 777
BstMAI	GTCTC	2 cut(s)	493, 974
BstMBI	GATC	3 cut(s)	49, 503, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	938
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	106, 226
BstSFI	CTRYAG	3 cut(s)	201, 492, 726
BstSNI	TACGTA	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	712, 748, 793
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	301, 566
BtsIMutI	CAGTG	2 cut(s)	786, 1008
Cac8I	GCNNGC	3 cut(s)	766, 804, 936
CciI	TCATGA	1 cut(s)	873
CseI	GACGC	1 cut(s)	800
Csp6I	GTAC	8 cut(s)	19, 139, 313, 331, 667, 784, 832, 921
CviAII	CATG	3 cut(s)	739, 874, 935
CviQI	GTAC	8 cut(s)	19, 139, 313, 331, 667, 784, 832, 921
DdeI	CTNAG	3 cut(s)	282, 534, 780
DpnI	GATC	3 cut(s)	51, 505, 776
DpnII	GATC	3 cut(s)	49, 503, 774
DraI	TTTAAA	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	2 cut(s)	73, 186
Eco105I	TACGTA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	850
Eco24I	GRGCYC	2 cut(s)	75, 188
Eco53kI	GAGCTC	2 cut(s)	73, 186
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	2 cut(s)	73, 186
EcoO65I	GGTNACC	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	408, 890
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	850
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	2 cut(s)	75, 188
ErhI	CCWWGG	1 cut(s)	850
FaeI	CATG	3 cut(s)	742, 877, 938
FaiI	YATR	9 cut(s)	29, 380, 436, 438, 531, 740, 818, 875, 936
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	3 cut(s)	738, 873, 934
FauNDI	CATATG	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	726, 762, 769, 807
FokI	GGATG	2 cut(s)	308, 573
FriOI	GRGCYC	2 cut(s)	75, 188
Fsp4HI	GCNGC	4 cut(s)	726, 762, 769, 807
FspBI	CTAG	4 cut(s)	413, 605, 719, 821
GluI	GCNGC	4 cut(s)	726, 762, 769, 807
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	800
Hin1II	CATG	3 cut(s)	742, 877, 938
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	4 cut(s)	34, 133, 609, 967
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	16, 242
Hpy166II	GTNNAC	4 cut(s)	43, 425, 786, 832
Hpy188I	TCNGA	5 cut(s)	54, 64, 183, 781, 889
Hpy188III	TCNNGA	2 cut(s)	674, 874
Hpy8I	GTNNAC	4 cut(s)	43, 425, 786, 832
HpyAV	CCTTC	4 cut(s)	98, 227, 286, 463
HpyCH4III	ACNGT	3 cut(s)	251, 335, 528
HpyCH4IV	ACGT	3 cut(s)	141, 552, 879
HpyCH4V	TGCA	8 cut(s)	459, 566, 620, 728, 809, 934, 938, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	3 cut(s)	282, 534, 780
HpySE526I	ACGT	3 cut(s)	141, 552, 879
Hsp92II	CATG	3 cut(s)	742, 877, 938
Kzo9I	GATC	3 cut(s)	49, 503, 774
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	3 cut(s)	712, 748, 793
LweI	GCATC	2 cut(s)	232, 607
MaeI	CTAG	4 cut(s)	413, 605, 719, 821
MaeII	ACGT	3 cut(s)	141, 552, 879
MaeIII	GTNAC	3 cut(s)	7, 96, 1001
MalI	GATC	3 cut(s)	51, 505, 776
MboI	GATC	3 cut(s)	49, 503, 774
MboII	GAAGA	3 cut(s)	142, 647, 956
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	75, 188
MluCI	AATT	7 cut(s)	352, 368, 408, 514, 840, 890, 929
MlyI	GAGTC	2 cut(s)	28, 976
MmeI	TCCRAC	4 cut(s)	385, 502, 538, 942
MnlI	CCTC	6 cut(s)	91, 102, 199, 341, 357, 715
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	5 cut(s)	342, 419, 647, 843, 1026
MslI	CAYNNNNRTG	2 cut(s)	125, 878
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	108, 228
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	731
NciI	CCSGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	3 cut(s)	49, 503, 774
NlaIII	CATG	3 cut(s)	742, 877, 938
NlaIV	GGNNCC	3 cut(s)	112, 217, 278
NmuCI	GTSAC	2 cut(s)	96, 1001
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	938
PaeI	GCATGC	1 cut(s)	938
PagI	TCATGA	1 cut(s)	873
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 549
PctI	GAATGC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	133, 609
PkrI	GCNGC	4 cut(s)	727, 763, 770, 808
PleI	GAGTC	2 cut(s)	28, 975
PpsI	GAGTC	2 cut(s)	28, 975
Ppu21I	YACGTR	1 cut(s)	142
Psp124BI	GAGCTC	2 cut(s)	75, 188
Psp6I	CCWGG	1 cut(s)	106
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	112, 217, 278
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	8 cut(s)	20, 140, 314, 332, 668, 785, 833, 922
RsaNI	GTAC	8 cut(s)	19, 139, 313, 331, 667, 784, 832, 921
RseI	CAYNNNNRTG	2 cut(s)	125, 878
SacI	GAGCTC	2 cut(s)	75, 188
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	5 cut(s)	342, 419, 647, 843, 1026
SatI	GCNGC	4 cut(s)	726, 762, 769, 807
Sau3AI	GATC	3 cut(s)	49, 503, 774
SchI	GAGTC	2 cut(s)	28, 976
ScrFI	CCNGG	2 cut(s)	108, 228
SduI	GDGCHC	2 cut(s)	75, 188
SfaNI	GCATC	2 cut(s)	232, 607
SfcI	CTRYAG	3 cut(s)	201, 492, 726
SmiMI	CAYNNNNRTG	2 cut(s)	125, 878
SmlI	CTYRAG	2 cut(s)	36, 593
SmoI	CTYRAG	2 cut(s)	36, 593
SnaBI	TACGTA	1 cut(s)	142
SphI	GCATGC	1 cut(s)	938
Sse9I	AATT	7 cut(s)	352, 368, 408, 514, 840, 890, 929
SsiI	CCGC	1 cut(s)	768
SspMI	CTAG	4 cut(s)	413, 605, 719, 821
SstI	GAGCTC	2 cut(s)	75, 188
StyD4I	CCNGG	2 cut(s)	106, 226
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	3 cut(s)	251, 335, 528
TaiI	ACGT	3 cut(s)	144, 555, 882
TaqI	TCGA	2 cut(s)	150, 612
TasI	AATT	7 cut(s)	352, 368, 408, 514, 840, 890, 929
TatI	WGTACW	3 cut(s)	330, 783, 831
TauI	GCSGC	1 cut(s)	771
TfiI	GAWTC	2 cut(s)	133, 609
Tru1I	TTAA	5 cut(s)	342, 419, 647, 843, 1026
Tru9I	TTAA	5 cut(s)	342, 419, 647, 843, 1026
TscAI	CASTG	2 cut(s)	793, 1015
TseFI	GTSAC	2 cut(s)	96, 1001
TseI	GCWGC	3 cut(s)	725, 761, 806
Tsp45I	GTSAC	2 cut(s)	96, 1001
TspDTI	ATGAA	5 cut(s)	188, 755, 862, 890, 973
TspGWI	ACGGA	2 cut(s)	60, 908
TspRI	CASTG	2 cut(s)	793, 1015
XapI	RAATTY	4 cut(s)	368, 408, 514, 890
XceI	RCATGY	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	4 cut(s)	413, 605, 719, 821
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.